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Gene: Atrnl1 (attractin like 1) Rattus norvegicus

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Symbol:

Atrnl1

Name:

attractin like 1

RGD ID:

1563485

Description:

Predicted to enable carbohydrate binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Orthologous to human ATRNL1 (attractin like 1); PARTICIPATES IN melanocortin system pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

attractin-like protein 1; LOC307992; RGD1563485; similar to mKIAA0534 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATRNL1 (attractin like 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Atrnl1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atrnl1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATRNL1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATRNL1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atrnl1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATRNL1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATRNL1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atrnl1 (attractin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCTP (phosphatidylcholine transfer protein)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Atrnl1 (attractin like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atrnl1 (attractin like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATRNL1 (attractin like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATRNL1 (attractin like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atrnl1a (attractin-like 1a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atrnl1b (attractin-like 1b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	atrn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dsd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dsd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atrnl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	266,676,051 - 267,216,847 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	266,675,852 - 267,216,842 (+)	Ensembl				GRCr8
mRatBN7.2	1	256,670,976 - 257,219,291 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	256,670,627 - 257,213,197 (+)	Ensembl				mRatBN7.2
Rnor_6.0	1	278,546,113 - 279,098,977 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	278,557,792 - 278,815,473 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	285,926,442 - 286,462,371 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	263,919,358 - 264,486,579 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	252,350,942 - 252,895,098 (+)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

atrazine (EXP,ISO)

bazedoxifene (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

boron atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (EXP,ISO)

cobalt dichloride (EXP)

crocidolite asbestos (ISO)

DDT (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental boron (ISO)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

L-methionine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

mitomycin C (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP,ISO)

O-methyleugenol (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

rimonabant (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

terbufos (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

G protein-coupled receptor signaling pathway (IEA,ISO)

Cellular Component

membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

melanocortin system pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Melanocortin receptors and their accessory proteins.	Cooray SN and Clark AJ, Mol Cell Endocrinol. 2011 Jan 15;331(2):215-21. Epub 2010 Jul 21.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:14531729

Genomics

Comparative Map Data

Atrnl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	266,676,051 - 267,216,847 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	266,675,852 - 267,216,842 (+)	Ensembl				GRCr8
mRatBN7.2	1	256,670,976 - 257,219,291 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	256,670,627 - 257,213,197 (+)	Ensembl				mRatBN7.2
Rnor_6.0	1	278,546,113 - 279,098,977 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	278,557,792 - 278,815,473 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	285,926,442 - 286,462,371 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	263,919,358 - 264,486,579 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	252,350,942 - 252,895,098 (+)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

ATRNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	115,093,365 - 115,948,999 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	115,093,365 - 115,948,999 (+)	Ensembl			hg38	GRCh38
GRCh37	10	116,853,124 - 117,708,510 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	116,843,114 - 117,698,486 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	110,582,194 - 111,437,829 (+)	NCBI		Celera
Cytogenetic Map	10	q25.3	NCBI
HuRef	10	110,480,245 - 111,335,700 (+)	NCBI		HuRef
CHM1_1	10	117,136,554 - 117,992,058 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	115,987,592 - 116,843,416 (+)	NCBI		T2T-CHM13v2.0

Atrnl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	57,599,248 - 58,121,775 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	57,599,466 - 58,121,775 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	57,610,960 - 58,133,343 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	57,611,034 - 58,133,343 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	57,685,524 - 58,207,833 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	57,664,295 - 58,186,593 (+)	NCBI		MGSCv36	mm8
Celera	19	59,805,957 - 60,326,522 (+)	NCBI		Celera
Cytogenetic Map	19	D2	NCBI
cM Map	19	53.31	NCBI

Atrnl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	19,994,365 - 20,744,940 (+)	Ensembl
ChiLan1.0	NW_004955431	19,994,365 - 20,745,018 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATRNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	126,967,776 - 127,824,798 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	126,973,114 - 127,827,727 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	111,685,975 - 112,537,808 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	115,120,807 - 115,971,321 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	115,121,033 - 115,967,103 (+)	Ensembl			panPan2	panpan1.1

ATRNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	25,816,404 - 26,603,302 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	25,768,697 - 26,601,819 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	25,968,782 - 26,754,735 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	26,352,303 - 27,138,906 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	26,352,303 - 27,138,636 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	25,906,922 - 26,695,247 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	25,922,451 - 26,707,632 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	26,115,450 - 26,902,144 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atrnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	19,592,783 - 20,293,030 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	5,264,900 - 5,966,524 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	5,265,034 - 5,968,304 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATRNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	125,406,698 - 126,180,777 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	125,406,536 - 126,183,405 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	136,580,106 - 137,312,133 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATRNL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	107,957,778 - 108,760,606 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	107,984,442 - 108,511,042 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	69,191,758 - 70,006,224 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atrnl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	30,633,607 - 31,534,980 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	30,620,184 - 31,534,995 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	176
Count of miRNA genes:	118
Interacting mature miRNAs:	132
Transcripts:	ENSRNOT00000023363, ENSRNOT00000023414, ENSRNOT00000067127
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	263946994	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1600390	Niddm64	Non-insulin dependent diabetes mellitus QTL 64		0.003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	257624997	270518180	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	255849111	270518180	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

D1Got254

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	267,096,070 - 267,096,252 (+)	Marker Load Pipeline
mRatBN7.2	1	257,090,986 - 257,091,168 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,977,845 - 278,978,026	NCBI	Rnor6.0
Rnor_5.0	1	286,341,508 - 286,341,689	UniSTS	Rnor5.0
RGSC_v3.4	1	264,367,212 - 264,367,394	RGD	RGSC3.4
RGSC_v3.4	1	264,367,213 - 264,367,394	UniSTS	RGSC3.4
Celera	1	252,775,585 - 252,775,766	UniSTS
RGSC_v3.1	1	264,578,258 - 264,578,439	RGD
RH 3.4 Map	1	1679.3	RGD
RH 3.4 Map	1	1679.3	UniSTS
RH 2.0 Map	1	1304.4	RGD
Cytogenetic Map	1	q55	UniSTS

D1Got255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	256,778,553 - 256,778,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,666,867 - 278,667,093	NCBI	Rnor6.0
Rnor_5.0	1	286,034,011 - 286,034,237	UniSTS	Rnor5.0
RGSC_v3.4	1	264,039,350 - 264,039,577	RGD	RGSC3.4
RGSC_v3.4	1	264,039,351 - 264,039,577	UniSTS	RGSC3.4
Celera	1	252,470,273 - 252,470,499	UniSTS
RGSC_v3.1	1	264,250,396 - 264,250,622	RGD
RH 3.4 Map	1	1683.3	RGD
RH 3.4 Map	1	1683.3	UniSTS
RH 2.0 Map	1	1311.5999	RGD
Cytogenetic Map	1	q55	UniSTS

D1Uwm9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	266,729,000 - 266,729,166 (+)	Marker Load Pipeline
mRatBN7.2	1	256,723,924 - 256,724,090 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,612,246 - 278,612,411	NCBI	Rnor6.0
Rnor_5.0	1	285,979,490 - 285,979,655	UniSTS	Rnor5.0
RGSC_v3.4	1	263,984,532 - 263,984,697	UniSTS	RGSC3.4
Celera	1	252,415,692 - 252,415,857	UniSTS
RGSC_v3.1	1	264,195,576 - 264,195,742	RGD
Cytogenetic Map	1	q55	UniSTS

AW555641

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	257,211,591 - 257,211,698 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	279,098,532 - 279,098,638	NCBI	Rnor6.0
Rnor_5.0	1	286,462,195 - 286,462,301	UniSTS	Rnor5.0
RGSC_v3.4	1	264,488,295 - 264,488,401	UniSTS	RGSC3.4
Celera	1	252,894,653 - 252,894,759	UniSTS
Cytogenetic Map	1	q55	UniSTS

AA893144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	266,769,480 - 266,769,685 (+)	Marker Load Pipeline
mRatBN7.2	1	256,764,408 - 256,764,613 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,652,723 - 278,652,927	NCBI	Rnor6.0
Rnor_5.0	1	286,019,867 - 286,020,071	UniSTS	Rnor5.0
RGSC_v3.4	1	264,025,205 - 264,025,409	UniSTS	RGSC3.4
Celera	1	252,456,127 - 252,456,331	UniSTS
RH 3.4 Map	1	1681.7	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH130145

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	257,211,484 - 257,211,679 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	279,098,425 - 279,098,619	NCBI	Rnor6.0
Rnor_5.0	1	286,462,088 - 286,462,282	UniSTS	Rnor5.0
RGSC_v3.4	1	264,488,188 - 264,488,382	UniSTS	RGSC3.4
Celera	1	252,894,546 - 252,894,740	UniSTS
RH 3.4 Map	1	1687.5	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH132521

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	256,669,184 - 256,669,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,556,693 - 278,556,900	NCBI	Rnor6.0
Rnor_5.0	1	285,925,436 - 285,925,643	UniSTS	Rnor5.0
RGSC_v3.4	1	263,929,232 - 263,929,439	UniSTS	RGSC3.4
Celera	1	252,360,620 - 252,360,827	UniSTS
RH 3.4 Map	1	1680.9	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH133242

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	257,062,098 - 257,062,308 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,949,394 - 278,949,603	NCBI	Rnor6.0
Rnor_5.0	1	286,313,057 - 286,313,266	UniSTS	Rnor5.0
RGSC_v3.4	1	264,338,762 - 264,338,971	UniSTS	RGSC3.4
Celera	1	252,747,197 - 252,747,406	UniSTS
RH 3.4 Map	1	1677.5	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH142601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	257,209,702 - 257,209,849 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	279,096,643 - 279,096,789	NCBI	Rnor6.0
Rnor_5.0	1	286,460,306 - 286,460,452	UniSTS	Rnor5.0
RGSC_v3.4	1	264,486,406 - 264,486,552	UniSTS	RGSC3.4
Celera	1	252,892,764 - 252,892,910	UniSTS
RH 3.4 Map	1	1687.5	UniSTS
Cytogenetic Map	1	q55	UniSTS

BF405363

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	267,170,235 - 267,170,327 (+)	Marker Load Pipeline
mRatBN7.2	1	257,165,154 - 257,165,246 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	279,052,099 - 279,052,190	NCBI	Rnor6.0
Rnor_5.0	1	286,415,762 - 286,415,853	UniSTS	Rnor5.0
RGSC_v3.4	1	264,441,862 - 264,441,953	UniSTS	RGSC3.4
Celera	1	252,848,192 - 252,848,283	UniSTS
RH 3.4 Map	1	1681.5	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH79941

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	256,991,960 - 256,992,146 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,880,797 - 278,880,982	NCBI	Rnor6.0
Rnor_5.0	1	286,244,460 - 286,244,645	UniSTS	Rnor5.0
RGSC_v3.4	1	264,270,354 - 264,270,539	UniSTS	RGSC3.4
Celera	1	252,678,978 - 252,679,163	UniSTS
Cytogenetic Map	1	q55	UniSTS

AA893144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	256,764,507 - 256,764,613 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	278,652,822 - 278,652,927	NCBI	Rnor6.0
Rnor_5.0	1	286,019,966 - 286,020,071	UniSTS	Rnor5.0
RGSC_v3.4	1	264,025,304 - 264,025,409	UniSTS	RGSC3.4
Celera	1	252,456,226 - 252,456,331	UniSTS
RH 3.4 Map	1	1681.7	UniSTS
Cytogenetic Map	1	q55	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	90	59	6	354	190	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023414 ⟹ ENSRNOP00000023414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	266,675,852 - 266,889,769 (+)	Ensembl
mRatBN7.2 Ensembl	1	256,670,627 - 257,067,116 (+)	Ensembl
Rnor_6.0 Ensembl	1	278,557,792 - 278,815,473 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105444 ⟹ ENSRNOP00000082650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	266,675,852 - 267,216,842 (+)	Ensembl
mRatBN7.2 Ensembl	1	256,670,639 - 257,163,484 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111371 ⟹ ENSRNOP00000087353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	266,675,852 - 267,216,842 (+)	Ensembl
mRatBN7.2 Ensembl	1	256,670,634 - 257,213,197 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115590 ⟹ ENSRNOP00000097340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	256,670,627 - 257,082,957 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118477 ⟹ ENSRNOP00000078125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	266,675,852 - 267,216,842 (+)	Ensembl
mRatBN7.2 Ensembl	1	256,670,627 - 257,211,764 (+)	Ensembl

RefSeq Acc Id:

XM_008760587 ⟹ XP_008758809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	266,676,051 - 267,216,847 (+)	NCBI
mRatBN7.2	1	256,670,976 - 257,219,291 (+)	NCBI
Rnor_6.0	1	278,546,113 - 279,098,977 (+)	NCBI

Sequence:

show sequence

ATGCCGCCCCGCCGGGCCGGACGCCGGGGAGATGAGCCGGGGGTCGGGGCCCGCTCCGGTGCCC
CGCAGCCGCCGCCCGGTGCTGTGGAGGGCTCGGCGGCGGCGGCGGGGGTTGCGGGGGGCGCCTC
CTCCTGGCTGCTGCTGGACGGGAACAGCTGGCTCCTGTGCTATGGCTTCCTCTACCTGGCGCTC
TATGCTCAGGTGTCCCAGTCCAAGCCCTGCGAGAGGACTGGCTCCTGCTTCTCGGGTCGCTGTG
TCAACTCCACCTGCCTGTGCGACCCGGGCTGGGTGGGGGACCAGTGCCAGCACTGCCAGGGCAG
GTTCAAGTTGACAGAACCTTCTGGATATTTAACAGATGGTCCAATTAACTATAAATATAAGACT
AAGTGTACATGGCTAATTGAAGGCTACCCAAATGCAGTGTTGAGGTTAAGATTCAATCACTTTG
CTACAGAGTGCAGCTGGGATCACATGTACGTGTATGATGGAGACTCAATATATGCGCCTTTAGT
GGCTGTACTTAGTGGCCTGATCGTTCCTGAAGTGAGGGGTAATGAGACGGTGCCTGAGGTTGTC
ACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCGTATAACCTAACAGGCTTTA
ACATTTTTTATTCAATCAATTCTTGTCCTAACAATTGCTCTGGTCATGGAAAATGTACAACTAG
TGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGCGAC
ATTCCTTACTGTAAAGCCAATTGTGGGAGCCCAGATCATGGCTACTGTGACCTAACGGGAGAAA
AACTCTGTGTCTGTAACGATAGTTGGCAAGGCCCAGACTGTTCTCTGAATGTCCCTTCCACCGA
GTCCTACTGGATTTTGCCAAATGTTAAGCCCTTCAGCCCTTCTGTAGGTCGGGCTTCACATAAA
GCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATACACTTTTAACTACAGTTCTTTTC
AAATGGTTCTCAATTACAACTTAGAAAGCAGCATATGGAATGTAGGTGCTGTGTCAAGGGGCCC
TCTGCAGAGATACGGGCATTCGCTTGCTCTCTATCAGGAAAACATCTTTATGTACGGGGGCAGA
ATGGAGACAAGTGACGGGAACGTCACCGATGAATTATGGGTGTTTAATGTACGCAGTCAGTCAT
GGAGCACGAAAACCCCCACTATCCTTGGGCACGGTCAGCAGTATGCTGTAGAGGGCCACTCGGC
ACACATCATGGAGCTGGACAGTGGCGATGTCGTCATGATTGTGATATTTGGATATTCTGCAATA
TATGGCTATACAAGCAGCATACAGGAATACCATATCTCATCCAACACTTGGCTGGTTCCGGAAA
CTAAAGGAGCCATTGTGCAAGGCGGTTATGGCCACACGAGTGTGTATGATGAAATGACCAAGTC
CGTTTATGTTCATGGCGGCTATAAAGCCCTGCCGGGGAATAAGTATGGGCTGGTGGATGACCTC
TACAAGTACGAAGTCAACAGCAGGACGTGGACTATTTTGAAAGAAAGTGGGTTTGCCAGATACC
TTCACTCAGCTGTGCTTATCAGTGGAGCTGTGCTTGTTTTTGGAGGAAACACTCATAATGACAC
TTCCCTGAGTAACGGTGCCAAGTGCTTTTCTGCCGACTTCCTGGCATATGACATAGCTTGTGAT
GAATGGAAGACATTGCCTAAACCAAATCTCCACAGAGATGTCAACCGATTTGGACATTCTGCAG
TCGTCATCAATGGGTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGACATCCT
TGTATATAAGCCTCCAAGTTGCAAAGCTTTCCGGGACGAAGAACTCTGCAGAAACGCTGGTCCA
GGGATAAAGTGTGTTTGGAATAAGAATCACTGTGAGTCCTGGGAGTCCGGGAACGCAAATCTCC
TGAGAGCCAAGTGCCCTCCCAGGACAGCCGCTTCTGATGACAGATGTTACAGATATGCAGACTG
TGCCAGCTGCACAGCCAACACAAATGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCC
AGCAGCAACTGCAGCACGTCTGTCAGAAACTACACTAAATGTCACATAAGAAATGAGCAAATTT
GTAACAAACTTACAAGTTGTAAAAGCTGTTCACTGAACTTGAATTGCCAGTGGGATCAGCGGCA
GCAAGAGTGCCAGGCCTTGCCAGCTCACCTTTGTGGAGAAGGCTGGAATCACGTTGGGGACTCT
TGTCTTCGAATCAATTCCAGTCGAGAAAGCTACGACAGTGCCAAGCTTTACTGCTATAATCTCA
GTGGGAATCTCGCCTCCCTGACCACATCCAAGGAGGTGGGGTTTGTGTTGGATGAAATACAGAA
GAACACACAGCAGAGAGTGTCACCGTGGGTCGGCCTACGCAAGATCAACATATCCTACTGGGGA
TGGGAGGACATGTCTCCTTTCACAAACACGAGCCTGCAGTGGCTGCCGGGTGAGCCAAACGACT
CTGGATTCTGTGCCTACTTGGAAAGGGCTGCTGTGGCAGGGTTGAAAGCCAACCCTTGTACATC
CATGGCAGACGGGCTTGTTTGTGAAAAGCCTGTGGTAAGTCCCAATCAGAACGCAAGGCCGTGC
AAGAAGCCGTGCTCCCTGCGGACCTCCTGTGCCAACTGCACGAGCAATGGCATGGAGTGCATGT
GGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCCTACATCATCTCCTTCCCCTACGGACA
GTGTCTGGAGTGGCAGACTGCCACCTGTTCACCTCAAAATTGTTCTGGATTAAGAACCTGTGGA
CAGTGCTTGGAGCAGCCCGGGTGTGGCTGGTGCAACGATCCCAGCAATACAGGAAGAGGATACT
GCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTTGCTGGGGTACACAACAGTGAGGTGGCTCT
TGACACCAGTCTCTGCCCCAAGGAGAAGAATTACGAGTGGTCTTTTATCCAGTGTCCAGCTTGC
CAGTGTAACGGACACAGCACTTGCATCAACAACAATGTCTGTGAGCAGTGTAAGAATCTCACCA
CTGGGAGGCAGTGTCAGGACTGCATGCCGGGGTACTACGGAGACCCAACCAATGGCGGGCAGTG
CACAGCTTGCACGTGTGGAGGTCATGCCAACGTCTGTCACCTGCACACAGGAAAGTGTTTCTGC
ACAACCAAGGGGATAAAAGGTGACCAGTGCCAACTATGTGACTCTGAAAATCGCTATGTTGGTA
ACCCACTTAGAGGGACATGCTATTACAGTCTGCTGATTGACTACCAGTTTACCTTCAGCTTGCT
GCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCAAACCCAGAGCAGTCAAACAAA
AACTTGGACATTTCCATTAATGCTTCCAACAACTTTAATCTCAACATCACGTGGTCTGTTGGCT
CAACAGGTGGAACAATATCTGGGGAAGAGACTCCTATAGTTTCTAAGATGAATATAAAAGAGTA
CAGAGATAGCTTTTCCTATGAAAAGTTTAACTTCAGGAGCAATCCTAACATCACGTTTTATGTG
TACGTCAGCAACTTCTCCTGGCCTATTAAAATACAGATTGCGTTTTCCCAACACAACACGATCA
TGGATCTGGTGCAGTTCTTTGTCACCTTCTTCAGTTGCTTTTTGTCTTTACTGCTGGTGGCTGC
TGTGGTCTGGAAGATCAAACAGACTTGCTGGGCTTCTCGTCGGAGAGAGCAACTGCTTCGAGAA
CGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAAC
AGACAGACTTTCTGCGAGGGCCATTAGAGGGTGCACCTAAGCCAATAGCCATCGAACCCTGTGC
TGGGAACAGAGCTGCTGTCCTGACGGTGTTTCTCTGTCTACCGAGAGGAACATCAGGTGCCCCA
CCCCCCGGGCAATCAGGACTTGCTATCGCCAGTGCCCTGATAGACATTTCACAGCAGAAGCCTT
CCGATAATAAAGACAAGACTTCTGGAGTGCGCAATCGGAAGCACCTCTCCACACGCCAAGGAAC
TTGTGTCTGAGAATGGGAACCAGCTCTGTACTGTGCACCCAAGTTACTTCACAAATGGCTTCTG
TTAGAGCTGTTTTGTGGCCTTGGATCTCACACAGGATAATGTCCTATGATCAGGGCCAGGTACA
ATTCCCTCTAAGTGGGCAGTGTCCCAAAAGGCCAGAGACTGCTAGTGAGTTGTTTTTTTTTTTA
AGTAACAGTATTGAGGGTTACAAGTGATAAAGTCAGTTTTTATGGCTCTCTCAGACTGGGAGCT
AACATAACTTAGTATGGAAAAAAAGATGTATATTGTTTCTTATTGCAGATGGAAATATGTAATT
CATATAAATCAACTGTTTATATCCCAAGACTTTAAAGAAAGACATTTTATAATGCTTGAATAAT
GAGAAATGTACAGTTTTTCTTGCCTCGTTTGCAAACTTAGGTCATTGGCATCAGAGTAGGAGAA
GAACAAGCTCTAGCAGCTGCGACTGCCATTTTGCCTCCTGACAAACATGAAAGCAAGGCTTCCA
TTTAATAAGCTGTAAGTCATGTGTTTAAGTCCTCCACGTGACCACCTGGGGTCCAGAGTCAGTT
TGAGAAGGTAGCAGTTTTCAACTAGTGGGAATGTCAGAGCAGAGAGTCAGGAAGTTTGTCGGAA
TTCAGGGAATGGAGGACACTCCTGAAAAGACAGGTATAAAAGGGGCTGCCTGGCAATTGGTGTC
CCCTCCTTCCACAAGCAGCCTCCAGTTGGAGAACCTGAAGAGCCAAGCCTGTCATTCCGTAGCA
GAGCTTCTGGTCCACCCATGATGCTTTGCTGCCAGGCCAGAGTTGTTCCCATGAGTCTGCACAA
GAATGTGTCATTTTCTTCCAGCTCTCTTCTGTTTGCCACTTCTTATTTACAAGTGTAACGAAAT
GTATTTTAAAGGTAACACTTTCCAAGTTCCCCGGCTGCCAACTTCTTCCTGTAGAATGCAAGCA
GACAAGAGCTGGGTCCGGCAAGCCTCAGCAAGATCCCCATCTCCAACGCAGTCACGCGGTGCTG
TGAGGAGTCTACATTCTAAAGGCAAATTCTTTGCTGACCACATGCCAAACATCCCTGACGACGC
AACCCCCGCCCCCCATCAGAGCAGAGAGGAAAGACAAAAGTGGGAGCCCTCACATGGAATGGGG
AATATAGCAACAGTAGCTCACTGAAGCTCACTCAGCTCGGAGCAGCAGCCATGGCTGACTTCAG
GGTGACTACCGGGGATACAAGAACAATGCAAAAGGGTCCCGAAGCTGCTGCATTCCCTGTGGTT
TCCTGTAACACAAAAGCCATTCCATCCGATCAGTGTTAAGTACAGTTTGCACATGTTTCATGTT
CTTTGGGATTTGGAAGGTGACGACACCTTAGAGTCAATACCTAGTCGCTGCATGCCATGGTTGT
ACAGTAGCAGAATATGATCCTATCGCAATATCAAATATTTATTTCAAATGCCATGTATACACAC
ATAGCTTGATTGGATGAGGATAGAGTGTACTATGAAACAGAAATGACCACAGACTATGTAGTTG
CATCTTTAAAGCATAGTTAGGTTGCATCTAACCATGACTGTCTTATTTTGATAACTAGCCTTTT
GGATATAGCTTATATTCCTTACGTTGGCATGATCCTTCTACTCTATTTTCCATGCACTCGAAAT
CAGATGAATTTGTAGAATAGTTTTAGAAATTTTCTCTACAGCCCATGGGGTTTGGGTTGGGGAG
GGGTCAGTGGCTGTTGGTAATTCCCAGGACATCATCTCTCAGAAAACTAGTCGAGCTGAATTCA
TGAACGTCTCCTAAAAATAACCAAGTAATTTGATCGCCGCCTTTTGGACACTTTCCATGGTGAT
CTCCCCCACCCCACCCCCATGAAAATGGAAGAACCGGTCCCTGTAAAGAATAGTCCTGGACAGT
AAAGTAGTCACACAGGTTGTGTAATTGCCAACAACGAAGCTAGAACAGACCTGTGGAAGTCCAG
TCTCACCCACTGTGAATCCCCCAGGTTCTTAAAACTTCAAAAAATTTTGAGTTTTAGATAATTA
TGGAATTAATGCAATGTCACGCTCTACCGTTAACTCTGTGGCCAATTATGCAATACACTCTCAG
CTTATAAAGCATTTTACTGGAAATAAAATTCTTCGCCCCCGGGGGGAAGTGAACCAAAAAGGCC
TCGTTCTCCCTCATTCTCCGTGTCTTCCTCCCCCCACTGCACTTCCTAAATGCAGACTTTCCTC
TGAGAAGTTAATTCAAATGATTGATTCTCTTGGAAACCTTTAAAATGGAATTCTGAACACTTCA
GCATAGAATGACTTGGGAAGGACTCCTCAGCCTGTGAGAGCTTACTCTGCCAAGTATGAGCACT
TGCAGTTGCCTGGAATGGAGCTTTGAAATTGACTTGGGAACGCTATCTTGACAAGAAGTCCTGG
TGAAAACAT

hide sequence

RefSeq Acc Id:

XM_039095274 ⟹ XP_038951202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	266,676,051 - 267,216,847 (+)	NCBI
mRatBN7.2	1	256,670,976 - 257,219,291 (+)	NCBI

RefSeq Acc Id:

XM_039095277 ⟹ XP_038951205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	266,676,051 - 266,905,680 (+)	NCBI
mRatBN7.2	1	256,670,976 - 256,887,187 (+)	NCBI

RefSeq Acc Id:

XM_039095283 ⟹ XP_038951211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	266,696,682 - 267,216,847 (+)	NCBI
mRatBN7.2	1	256,692,026 - 257,219,291 (+)	NCBI

RefSeq Acc Id:

XM_063281046 ⟹ XP_063137116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	266,676,051 - 267,200,787 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418043	(Get FASTA)	NCBI Sequence Viewer
	NP_001418044	(Get FASTA)	NCBI Sequence Viewer
	XP_008758809	(Get FASTA)	NCBI Sequence Viewer
	XP_038951202	(Get FASTA)	NCBI Sequence Viewer
	XP_038951205	(Get FASTA)	NCBI Sequence Viewer
	XP_038951211	(Get FASTA)	NCBI Sequence Viewer
	XP_063137116	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94526	(Get FASTA)	NCBI Sequence Viewer
	EDL94527	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023414
	ENSRNOP00000023414.7
	ENSRNOP00000078125
	ENSRNOP00000078125.1
	ENSRNOP00000082650.1
	ENSRNOP00000087353
	ENSRNOP00000087353.1
	ENSRNOP00000097340.1

RefSeq Acc Id:

XP_008758809 ⟸ XM_008760587

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPPRRAGRRGDEPGVGARSGAPQPPPGAVEGSAAAAGVAGGASSWLLLDGNSWLLCYGFLYLAL
YAQVSQSKPCERTGSCFSGRCVNSTCLCDPGWVGDQCQHCQGRFKLTEPSGYLTDGPINYKYKT
KCTWLIEGYPNAVLRLRFNHFATECSWDHMYVYDGDSIYAPLVAVLSGLIVPEVRGNETVPEVV
TTSGYALLHFFSDAAYNLTGFNIFYSINSCPNNCSGHGKCTTSVSVASQVYCECDKYWKGEACD
IPYCKANCGSPDHGYCDLTGEKLCVCNDSWQGPDCSLNVPSTESYWILPNVKPFSPSVGRASHK
AVLHGKFMWVIGGYTFNYSSFQMVLNYNLESSIWNVGAVSRGPLQRYGHSLALYQENIFMYGGR
METSDGNVTDELWVFNVRSQSWSTKTPTILGHGQQYAVEGHSAHIMELDSGDVVMIVIFGYSAI
YGYTSSIQEYHISSNTWLVPETKGAIVQGGYGHTSVYDEMTKSVYVHGGYKALPGNKYGLVDDL
YKYEVNSRTWTILKESGFARYLHSAVLISGAVLVFGGNTHNDTSLSNGAKCFSADFLAYDIACD
EWKTLPKPNLHRDVNRFGHSAVVINGSMYIFGGFSSVLLNDILVYKPPSCKAFRDEELCRNAGP
GIKCVWNKNHCESWESGNANLLRAKCPPRTAASDDRCYRYADCASCTANTNGCQWCDDKKCISA
SSNCSTSVRNYTKCHIRNEQICNKLTSCKSCSLNLNCQWDQRQQECQALPAHLCGEGWNHVGDS
CLRINSSRESYDSAKLYCYNLSGNLASLTTSKEVGFVLDEIQKNTQQRVSPWVGLRKINISYWG
WEDMSPFTNTSLQWLPGEPNDSGFCAYLERAAVAGLKANPCTSMADGLVCEKPVVSPNQNARPC
KKPCSLRTSCANCTSNGMECMWCSSTKRCVDSNAYIISFPYGQCLEWQTATCSPQNCSGLRTCG
QCLEQPGCGWCNDPSNTGRGYCIEGSSRGPMKLAGVHNSEVALDTSLCPKEKNYEWSFIQCPAC
QCNGHSTCINNNVCEQCKNLTTGRQCQDCMPGYYGDPTNGGQCTACTCGGHANVCHLHTGKCFC
TTKGIKGDQCQLCDSENRYVGNPLRGTCYYSLLIDYQFTFSLLQEDDRHHTAINFIANPEQSNK
NLDISINASNNFNLNITWSVGSTGGTISGEETPIVSKMNIKEYRDSFSYEKFNFRSNPNITFYV
YVSNFSWPIKIQIAFSQHNTIMDLVQFFVTFFSCFLSLLLVAAVVWKIKQTCWASRRREQLLRE
RQQMASRPFASVDVALEVGAEQTDFLRGPLEGAPKPIAIEPCAGNRAAVLTVFLCLPRGTSGAP
PPGQSGLAIASALIDISQQKPSDNKDKTSGVRNRKHLSTRQGTCV

hide sequence

Ensembl Acc Id:

ENSRNOP00000023414 ⟸ ENSRNOT00000023414

RefSeq Acc Id:	XP_038951202 ⟸ XM_039095274
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AGE2 (UniProtKB/TrEMBL), F1M3T8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951205 ⟸ XM_039095277
- Peptide Label:	isoform X4
- UniProtKB:	F1M3T8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951211 ⟸ XM_039095283
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000078125 ⟸ ENSRNOT00000118477

Ensembl Acc Id:

ENSRNOP00000097340 ⟸ ENSRNOT00000115590

Ensembl Acc Id:

ENSRNOP00000087353 ⟸ ENSRNOT00000111371

Ensembl Acc Id:

ENSRNOP00000082650 ⟸ ENSRNOT00000105444

RefSeq Acc Id:	XP_063137116 ⟸ XM_063281046
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZVB8 (UniProtKB/TrEMBL), F1M3T8 (UniProtKB/TrEMBL)

Protein Domains

C-type lectin CUB EGF-like Laminin EGF-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M3T8-F1-model_v2	AlphaFold	F1M3T8	1-1126	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563485	AgrOrtholog
BioCyc Gene	G2FUF-55283	BioCyc
Ensembl Genes	ENSRNOG00000017406	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023414	ENTREZGENE
	ENSRNOT00000023414.8	UniProtKB/TrEMBL
	ENSRNOT00000105444.1	UniProtKB/TrEMBL
	ENSRNOT00000111371	ENTREZGENE
	ENSRNOT00000111371.1	UniProtKB/TrEMBL
	ENSRNOT00000115590.1	UniProtKB/TrEMBL
	ENSRNOT00000118477	ENTREZGENE
	ENSRNOT00000118477.1	UniProtKB/TrEMBL
Gene3D-CATH	2.120.10.80	UniProtKB/TrEMBL
	2.60.120.290	UniProtKB/TrEMBL
	3.10.100.10	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
InterPro	Beta-prop_ATRN-MKLN-like	UniProtKB/TrEMBL
	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
	CUB_dom	UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/TrEMBL
	Gal_Oxase/kelch_b-propeller	UniProtKB/TrEMBL
	GBD_ATRN	UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/TrEMBL
	Laminin_EGF	UniProtKB/TrEMBL
	LMN_ATRN_NET-like_EGF	UniProtKB/TrEMBL
	LZTR1/Attractin	UniProtKB/TrEMBL
	Plexin_repeat	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Sperma_CUB_dom_sf	UniProtKB/TrEMBL
NCBI Gene	307992	ENTREZGENE
PANTHER	ATTRACTIN-LIKE PROTEIN 1	UniProtKB/TrEMBL
	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	UniProtKB/TrEMBL
Pfam	Beta-prop_ATRN-LZTR1	UniProtKB/TrEMBL
	CUB	UniProtKB/TrEMBL
	EGF_LMN_ATRN	UniProtKB/TrEMBL
	EGF_Teneurin	UniProtKB/TrEMBL
	GBD_ATRN	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
PhenoGen	Atrnl1	PhenoGen
PROSITE	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
	CUB	UniProtKB/TrEMBL
	EGF_1	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	EGF_LAM_1	UniProtKB/TrEMBL
	EGF_LAM_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017406	RatGTEx
SMART	CLECT	UniProtKB/TrEMBL
	CUB	UniProtKB/TrEMBL
	EGF	UniProtKB/TrEMBL
	EGF_Lam	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
	SSF117281	UniProtKB/TrEMBL
	SSF49854	UniProtKB/TrEMBL
	SSF50965	UniProtKB/TrEMBL
	SSF56436	UniProtKB/TrEMBL
UniProt	A0A8I5Y1Z3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZVB8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGE2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ARE1_RAT	UniProtKB/TrEMBL
	F1M3T8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Atrnl1	attractin like 1	RGD1563485_predicted	similar to mKIAA0534 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563485_predicted	similar to mKIAA0534 protein (predicted)	LOC307992	similar to mKIAA0534 protein	Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations