Atrnl1 (attractin like 1) - Rat Genome Database

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Gene: Atrnl1 (attractin like 1) Rattus norvegicus
Analyze
Symbol: Atrnl1
Name: attractin like 1
RGD ID: 1563485
Description: Predicted to enable carbohydrate binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Orthologous to human ATRNL1 (attractin like 1); PARTICIPATES IN melanocortin system pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: attractin-like protein 1; LOC307992; RGD1563485; similar to mKIAA0534 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81266,676,051 - 267,216,847 (+)NCBIGRCr8
mRatBN7.21256,670,976 - 257,219,291 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1256,670,627 - 257,213,197 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01278,546,113 - 279,098,977 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1278,557,792 - 278,815,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01285,926,442 - 286,462,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,919,358 - 264,486,579 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1252,350,942 - 252,895,098 (+)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Melanocortin receptors and their accessory proteins. Cooray SN and Clark AJ, Mol Cell Endocrinol. 2011 Jan 15;331(2):215-21. Epub 2010 Jul 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14531729  


Genomics

Comparative Map Data
Atrnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81266,676,051 - 267,216,847 (+)NCBIGRCr8
mRatBN7.21256,670,976 - 257,219,291 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1256,670,627 - 257,213,197 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01278,546,113 - 279,098,977 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1278,557,792 - 278,815,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01285,926,442 - 286,462,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,919,358 - 264,486,579 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1252,350,942 - 252,895,098 (+)NCBICelera
Cytogenetic Map1q55NCBI
ATRNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810115,093,365 - 115,948,999 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10115,093,365 - 115,948,999 (+)EnsemblGRCh38hg38GRCh38
GRCh3710116,853,124 - 117,708,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610116,843,114 - 117,698,486 (+)NCBINCBI36Build 36hg18NCBI36
Celera10110,582,194 - 111,437,829 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10110,480,245 - 111,335,700 (+)NCBIHuRef
CHM1_110117,136,554 - 117,992,058 (+)NCBICHM1_1
T2T-CHM13v2.010115,987,592 - 116,843,416 (+)NCBIT2T-CHM13v2.0
Atrnl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,599,248 - 58,121,775 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1957,599,466 - 58,121,775 (+)EnsemblGRCm39 Ensembl
GRCm381957,610,960 - 58,133,343 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,611,034 - 58,133,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv371957,685,524 - 58,207,833 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361957,664,295 - 58,186,593 (+)NCBIMGSCv36mm8
Celera1959,805,957 - 60,326,522 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1953.31NCBI
Atrnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543119,994,365 - 20,744,940 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543119,994,365 - 20,745,018 (+)NCBIChiLan1.0ChiLan1.0
ATRNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28126,967,776 - 127,824,798 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110126,973,114 - 127,827,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010111,685,975 - 112,537,808 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110115,120,807 - 115,971,321 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10115,121,033 - 115,967,103 (+)Ensemblpanpan1.1panPan2
ATRNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12825,816,404 - 26,603,302 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2825,768,697 - 26,601,819 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2825,968,782 - 26,754,735 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02826,352,303 - 27,138,906 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2826,352,303 - 27,138,636 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12825,906,922 - 26,695,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02825,922,451 - 26,707,632 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02826,115,450 - 26,902,144 (+)NCBIUU_Cfam_GSD_1.0
Atrnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721319,592,783 - 20,293,030 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364865,264,900 - 5,966,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364865,265,034 - 5,968,304 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATRNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14125,406,698 - 126,180,777 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114125,406,536 - 126,183,405 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214136,580,106 - 137,312,133 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATRNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19107,957,778 - 108,760,606 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9107,984,442 - 108,511,042 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604869,191,758 - 70,006,224 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atrnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473730,633,607 - 31,534,980 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473730,620,184 - 31,534,995 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atrnl1
4384 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:118
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000023363, ENSRNOT00000023414, ENSRNOT00000067127
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1245907761257976495Rat

Markers in Region
D1Got254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,090,986 - 257,091,168 (+)MAPPERmRatBN7.2
Rnor_6.01278,977,845 - 278,978,026NCBIRnor6.0
Rnor_5.01286,341,508 - 286,341,689UniSTSRnor5.0
RGSC_v3.41264,367,212 - 264,367,394RGDRGSC3.4
RGSC_v3.41264,367,213 - 264,367,394UniSTSRGSC3.4
RGSC_v3.11264,578,258 - 264,578,439RGD
Celera1252,775,585 - 252,775,766UniSTS
RH 3.4 Map11679.3UniSTS
RH 3.4 Map11679.3RGD
RH 2.0 Map11304.4RGD
Cytogenetic Map1q55UniSTS
D1Got255  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,778,553 - 256,778,780 (+)MAPPERmRatBN7.2
Rnor_6.01278,666,867 - 278,667,093NCBIRnor6.0
Rnor_5.01286,034,011 - 286,034,237UniSTSRnor5.0
RGSC_v3.41264,039,350 - 264,039,577RGDRGSC3.4
RGSC_v3.41264,039,351 - 264,039,577UniSTSRGSC3.4
RGSC_v3.11264,250,396 - 264,250,622RGD
Celera1252,470,273 - 252,470,499UniSTS
RH 3.4 Map11683.3UniSTS
RH 3.4 Map11683.3RGD
RH 2.0 Map11311.5999RGD
Cytogenetic Map1q55UniSTS
D1Uwm9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,723,924 - 256,724,090 (+)MAPPERmRatBN7.2
Rnor_6.01278,612,246 - 278,612,411NCBIRnor6.0
Rnor_5.01285,979,490 - 285,979,655UniSTSRnor5.0
RGSC_v3.41263,984,532 - 263,984,697UniSTSRGSC3.4
RGSC_v3.11264,195,576 - 264,195,742RGD
Celera1252,415,692 - 252,415,857UniSTS
Cytogenetic Map1q55UniSTS
AW555641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,211,591 - 257,211,698 (+)MAPPERmRatBN7.2
Rnor_6.01279,098,532 - 279,098,638NCBIRnor6.0
Rnor_5.01286,462,195 - 286,462,301UniSTSRnor5.0
RGSC_v3.41264,488,295 - 264,488,401UniSTSRGSC3.4
Celera1252,894,653 - 252,894,759UniSTS
Cytogenetic Map1q55UniSTS
AA893144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,764,408 - 256,764,613 (+)MAPPERmRatBN7.2
Rnor_6.01278,652,723 - 278,652,927NCBIRnor6.0
Rnor_5.01286,019,867 - 286,020,071UniSTSRnor5.0
RGSC_v3.41264,025,205 - 264,025,409UniSTSRGSC3.4
Celera1252,456,127 - 252,456,331UniSTS
RH 3.4 Map11681.7UniSTS
Cytogenetic Map1q55UniSTS
RH130145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,211,484 - 257,211,679 (+)MAPPERmRatBN7.2
Rnor_6.01279,098,425 - 279,098,619NCBIRnor6.0
Rnor_5.01286,462,088 - 286,462,282UniSTSRnor5.0
RGSC_v3.41264,488,188 - 264,488,382UniSTSRGSC3.4
Celera1252,894,546 - 252,894,740UniSTS
RH 3.4 Map11687.5UniSTS
Cytogenetic Map1q55UniSTS
RH132521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,669,184 - 256,669,392 (+)MAPPERmRatBN7.2
Rnor_6.01278,556,693 - 278,556,900NCBIRnor6.0
Rnor_5.01285,925,436 - 285,925,643UniSTSRnor5.0
RGSC_v3.41263,929,232 - 263,929,439UniSTSRGSC3.4
Celera1252,360,620 - 252,360,827UniSTS
RH 3.4 Map11680.9UniSTS
Cytogenetic Map1q55UniSTS
RH133242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,062,098 - 257,062,308 (+)MAPPERmRatBN7.2
Rnor_6.01278,949,394 - 278,949,603NCBIRnor6.0
Rnor_5.01286,313,057 - 286,313,266UniSTSRnor5.0
RGSC_v3.41264,338,762 - 264,338,971UniSTSRGSC3.4
Celera1252,747,197 - 252,747,406UniSTS
RH 3.4 Map11677.5UniSTS
Cytogenetic Map1q55UniSTS
RH142601  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,209,702 - 257,209,849 (+)MAPPERmRatBN7.2
Rnor_6.01279,096,643 - 279,096,789NCBIRnor6.0
Rnor_5.01286,460,306 - 286,460,452UniSTSRnor5.0
RGSC_v3.41264,486,406 - 264,486,552UniSTSRGSC3.4
Celera1252,892,764 - 252,892,910UniSTS
RH 3.4 Map11687.5UniSTS
Cytogenetic Map1q55UniSTS
BF405363  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,165,154 - 257,165,246 (+)MAPPERmRatBN7.2
Rnor_6.01279,052,099 - 279,052,190NCBIRnor6.0
Rnor_5.01286,415,762 - 286,415,853UniSTSRnor5.0
RGSC_v3.41264,441,862 - 264,441,953UniSTSRGSC3.4
Celera1252,848,192 - 252,848,283UniSTS
RH 3.4 Map11681.5UniSTS
Cytogenetic Map1q55UniSTS
RH79941  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,991,960 - 256,992,146 (+)MAPPERmRatBN7.2
Rnor_6.01278,880,797 - 278,880,982NCBIRnor6.0
Rnor_5.01286,244,460 - 286,244,645UniSTSRnor5.0
RGSC_v3.41264,270,354 - 264,270,539UniSTSRGSC3.4
Celera1252,678,978 - 252,679,163UniSTS
Cytogenetic Map1q55UniSTS
AA893144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21256,764,507 - 256,764,613 (+)MAPPERmRatBN7.2
Rnor_6.01278,652,822 - 278,652,927NCBIRnor6.0
Rnor_5.01286,019,966 - 286,020,071UniSTSRnor5.0
RGSC_v3.41264,025,304 - 264,025,409UniSTSRGSC3.4
Celera1252,456,226 - 252,456,331UniSTS
RH 3.4 Map11681.7UniSTS
Cytogenetic Map1q55UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 16 16 1 1 72 35 32 11 1
Low 3 41 40 40 3 40 7 10 2 9 7
Below cutoff 1 1 1

Sequence


RefSeq Acc Id: ENSRNOT00000023414   ⟹   ENSRNOP00000023414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1256,670,627 - 257,067,116 (+)Ensembl
Rnor_6.0 Ensembl1278,557,792 - 278,815,473 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105444   ⟹   ENSRNOP00000082650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1256,670,639 - 257,163,484 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111371   ⟹   ENSRNOP00000087353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1256,670,634 - 257,213,197 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115590   ⟹   ENSRNOP00000097340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1256,670,627 - 257,082,957 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118477   ⟹   ENSRNOP00000078125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1256,670,627 - 257,211,764 (+)Ensembl
RefSeq Acc Id: XM_008760587   ⟹   XP_008758809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,676,051 - 267,216,847 (+)NCBI
mRatBN7.21256,670,976 - 257,219,291 (+)NCBI
Rnor_6.01278,546,113 - 279,098,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095274   ⟹   XP_038951202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,676,051 - 267,216,847 (+)NCBI
mRatBN7.21256,670,976 - 257,219,291 (+)NCBI
RefSeq Acc Id: XM_039095277   ⟹   XP_038951205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,676,051 - 266,905,680 (+)NCBI
mRatBN7.21256,670,976 - 256,887,187 (+)NCBI
RefSeq Acc Id: XM_039095283   ⟹   XP_038951211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,696,682 - 267,216,847 (+)NCBI
mRatBN7.21256,692,026 - 257,219,291 (+)NCBI
RefSeq Acc Id: XM_063281046   ⟹   XP_063137116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81266,676,051 - 267,200,787 (+)NCBI
RefSeq Acc Id: XP_008758809   ⟸   XM_008760587
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y1Z3 (UniProtKB/TrEMBL),   F1M3T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000023414   ⟸   ENSRNOT00000023414
RefSeq Acc Id: XP_038951202   ⟸   XM_039095274
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AGE2 (UniProtKB/TrEMBL),   F1M3T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951205   ⟸   XM_039095277
- Peptide Label: isoform X4
- UniProtKB: F1M3T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951211   ⟸   XM_039095283
- Peptide Label: isoform X5
- UniProtKB: F1M3T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078125   ⟸   ENSRNOT00000118477
RefSeq Acc Id: ENSRNOP00000097340   ⟸   ENSRNOT00000115590
RefSeq Acc Id: ENSRNOP00000087353   ⟸   ENSRNOT00000111371
RefSeq Acc Id: ENSRNOP00000082650   ⟸   ENSRNOT00000105444
RefSeq Acc Id: XP_063137116   ⟸   XM_063281046
- Peptide Label: isoform X2
- UniProtKB: F1M3T8 (UniProtKB/TrEMBL),   A0A8I5ZVB8 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin   CUB   EGF-like   Laminin EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M3T8-F1-model_v2 AlphaFold F1M3T8 1-1126 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563485 AgrOrtholog
BioCyc Gene G2FUF-55283 BioCyc
Ensembl Genes ENSRNOG00000017406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023414.8 UniProtKB/TrEMBL
  ENSRNOT00000105444.1 UniProtKB/TrEMBL
  ENSRNOT00000111371.1 UniProtKB/TrEMBL
  ENSRNOT00000115590.1 UniProtKB/TrEMBL
  ENSRNOT00000118477.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  CUB_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Gal_Oxase/kelch_b-propeller UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
NCBI Gene 307992 ENTREZGENE
PANTHER DISTRACTED, ISOFORM B UniProtKB/TrEMBL
  LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_4 UniProtKB/TrEMBL
  Kelch_5 UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
PhenoGen Atrnl1 PhenoGen
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017406 RatGTEx
SMART CLECT UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF117281 UniProtKB/TrEMBL
  SSF49854 UniProtKB/TrEMBL
  SSF50965 UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
UniProt A0A8I5Y1Z3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARE1_RAT UniProtKB/TrEMBL
  F1M3T8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Atrnl1  attractin like 1  RGD1563485_predicted  similar to mKIAA0534 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563485_predicted  similar to mKIAA0534 protein (predicted)  LOC307992  similar to mKIAA0534 protein  Symbol and Name status set to approved 1299863 APPROVED