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Gene: Pde6c (phosphodiesterase 6C) Rattus norvegicus
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Symbol: Pde6c
Name: phosphodiesterase 6C
Description: Predicted to have 3',5'-cyclic-nucleotide phosphodiesterase activity and metal ion binding activity. Predicted to be involved in phototransduction, visible light; retinal cone cell development; and visual perception. Human ortholog(s) of this gene implicated in cone-rod dystrophy. Orthologous to human PDE6C (phosphodiesterase 6C); PARTICIPATES IN visual phototransduction pathway; purine metabolic pathway; INTERACTS WITH bisphenol A; furan; genistein.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'; LOC361752; phosphodiesterase 6C, cGMP specific, cone, alpha prime
Orthologs:
Homo sapiens (human) : PDE6C (phosphodiesterase 6C)  HGNC  Alliance
Mus musculus (house mouse) : Pde6c (phosphodiesterase 6C, cGMP specific, cone, alpha prime)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pde6c (phosphodiesterase 6C)
Pan paniscus (bonobo/pygmy chimpanzee) : PDE6C (phosphodiesterase 6C)
Canis lupus familiaris (dog) : PDE6C (phosphodiesterase 6C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pde6c (phosphodiesterase 6C)
Sus scrofa (pig) : PDE6C (phosphodiesterase 6C)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01256,822,099 - 256,885,879 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01264,302,622 - 264,358,510 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,459,653 - 242,515,102 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,652,932 - 242,727,438 (+)NCBI
Celera1233,003,126 - 233,058,624 (+)NCBICelera
Cytogenetic Map1q53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Pde6c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309844
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.