LOC120100208 (small nucleolar RNA SNORA71) - Rat Genome Database

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Gene: LOC120100208 (small nucleolar RNA SNORA71) Rattus norvegicus
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Symbol: LOC120100208
Name: small nucleolar RNA SNORA71
RGD ID: 40956048
Description: Orthologous to human SNORA71D (small nucleolar RNA, H/ACA box 71D); INTERACTS WITH benzalkonium chloride (ortholog); benzene-1,2,4-triol (ortholog); bisphenol A (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: SNORA71
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,544,327 - 241,544,458 (-)NCBIGRCr8
mRatBN7.21232,131,169 - 232,131,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,131,169 - 232,131,300 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1252,923,235 - 252,923,366 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC120100208Ratbenzalkonium chloride decreases expressionISOSNORA71D (Homo sapiens)6480464Benzalkonium Compounds results in decreased expression of SNORA71D mRNACTDPMID:25377654
LOC120100208Ratbenzene-1,2,4-triol increases expressionISOSNORA71D (Homo sapiens)6480464hydroxyhydroquinone results in increased expression of SNORA71D mRNACTDPMID:39245080
LOC120100208Ratbisphenol A decreases expressionISOSNORA71D (Homo sapiens)6480464bisphenol A results in decreased expression of SNORA71D mRNACTDPMID:29275510
LOC120100208Ratcadmium dichloride decreases expressionISOSNORA71D (Homo sapiens)6480464Cadmium Chloride results in decreased expression of SNORA71D mRNACTDPMID:38382870
LOC120100208Ratdisodium selenite increases expressionISOSNORA71D (Homo sapiens)6480464Sodium Selenite results in increased expression of SNORA71D mRNACTDPMID:24383545
LOC120100208RatTriton X-100 decreases expressionISOSNORA71D (Homo sapiens)6480464Octoxynol results in decreased expression of SNORA71D mRNACTDPMID:25377654
LOC120100208Ratvalproic acid increases methylationISOSNORA71D (Homo sapiens)6480464Valproic Acid results in increased methylation of SNORA71D geneCTDPMID:29154799
LOC120100208Ratversicolorin A increases expressionISOSNORA71D (Homo sapiens)6480464versicolorin A results in increased expression of SNORA71D mRNACTDPMID:32106047



LOC120100208
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,544,327 - 241,544,458 (-)NCBIGRCr8
mRatBN7.21232,131,169 - 232,131,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,131,169 - 232,131,300 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1252,923,235 - 252,923,366 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q53NCBI
SNORA71D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,433,862 - 38,433,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,433,865 - 38,433,998 (-)EnsemblGRCh38hg38GRCh38
GRCh372037,062,505 - 37,062,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,495,919 - 36,496,056 (-)NCBINCBI36Build 36hg18NCBI36
Celera2033,771,309 - 33,771,446 (-)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,797,552 - 33,797,689 (-)NCBIHuRef
CHM1_12036,966,246 - 36,966,383 (-)NCBICHM1_1
T2T-CHM13v2.02040,161,449 - 40,161,586 (-)NCBIT2T-CHM13v2.0
Gm22684
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391920,010,868 - 20,010,999 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1920,010,868 - 20,010,999 (-)EnsemblGRCm39 Ensembl
GRCm381920,033,504 - 20,033,635 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1920,033,504 - 20,033,635 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19BNCBI
LOC119865793
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2426,566,011 - 26,566,144 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02427,616,811 - 27,616,944 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2427,616,811 - 27,616,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,890,683 - 26,890,816 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02426,998,921 - 26,999,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02427,487,025 - 27,487,158 (-)NCBIUU_Cfam_GSD_1.0

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Variants in LOC120100208
1 total Variants

1 to 10 of 73 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat

1 to 10 of 73 rows





RefSeq Transcripts XR_005499989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,131,169 - 232,131,300 (-)Ensembl
RefSeq Acc Id: XR_005499989
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,544,327 - 241,544,458 (-)NCBI
mRatBN7.21232,131,169 - 232,131,300 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-55868 BioCyc
Ensembl Genes ENSRNOG00000053533 Ensembl
NCBI Gene LOC120100208 ENTREZGENE
PhenoGen LOC120100208 PhenoGen
RatGTEx ENSRNOG00000053533 RatGTEx
RNAcentral URS00006A6FCE RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100208  small nucleolar RNA SNORA71  SNORA71  Small nucleolar RNA SNORA71  Data merged from RGD:15007984 737654 PROVISIONAL
2021-01-26 LOC120100208  small nucleolar RNA SNORA71      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 SNORA71  Small nucleolar RNA SNORA71      Symbol and Name status set to provisional 45752 PROVISIONAL