Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Rcl1 (RNA terminal phosphate cyclase-like 1) Rattus norvegicus
Analyze
Symbol: Rcl1
Name: RNA terminal phosphate cyclase-like 1
Description: Predicted to have endoribonuclease activity. Predicted to be involved in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to localize to nucleolus. Orthologous to human RCL1 (RNA terminal phosphate cyclase like 1); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH acetamide; bisphenol A; buspirone.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ab1-353; Ac1292; LOC309301; RNA 3'-terminal phosphate cyclase-like protein
Orthologs:
Homo sapiens (human) : RCL1 (RNA terminal phosphate cyclase like 1)  HGNC  Alliance
Mus musculus (house mouse) : Rcl1 (RNA terminal phosphate cyclase-like 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rcl1 (RNA terminal phosphate cyclase like 1)
Pan paniscus (bonobo/pygmy chimpanzee) : RCL1 (RNA terminal phosphate cyclase like 1)
Canis lupus familiaris (dog) : RCL1 (RNA terminal phosphate cyclase like 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rcl1 (RNA terminal phosphate cyclase like 1)
Sus scrofa (pig) : RCL1 (RNA terminal phosphate cyclase like 1)
Chlorocebus sabaeus (African green monkey) : RCL1 (RNA terminal phosphate cyclase like 1)
Heterocephalus glaber (naked mole-rat) : Rcl1 (RNA terminal phosphate cyclase like 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01247,228,012 - 247,272,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,228,061 - 247,305,693 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,467,399 - 254,544,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,766,489 - 232,787,901 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11232,930,511 - 232,951,923 (+)NCBI
Celera1223,999,296 - 224,020,801 (+)NCBICelera
Cytogenetic Map1q52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rcl1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305320
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.