Ccnj (cyclin J) - Rat Genome Database

Name: Ccnj
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ccnj (cyclin J) Rattus norvegicus

Analyze

Symbol:

Ccnj (Ensembl: NEWGENE_1306399)

Name:

cyclin J

RGD ID:

1306399

Description:

Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm; microtubule organizing center; and nucleus. Orthologous to human CCNJ (cyclin J); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cyclin-J; LOC294053; NEWGENE_1306399

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNJ (cyclin J)	HGNC	Ensembl, HomoloGene, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCNJ (cyclin J)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccnj (cyclin J)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccnj (cyclin J)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CycJ	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CLN3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ccnj	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	249,608,991 - 249,626,798 (+)	NCBI		GRCr8
mRatBN7.2	1	239,659,588 - 239,677,367 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	247,801,930 - 247,819,734 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	254,499,035 - 254,516,839 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	247,152,062 - 247,169,868 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	259,926,537 - 259,944,275 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	260,093,641 - 260,111,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	259,926,537 - 259,944,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	267,536,058 - 267,553,926 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	245,997,221 - 246,015,024 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	246,111,591 - 246,127,025 (+)	NCBI
Celera	1	235,503,312 - 235,521,115 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

agammaglobulinemia 4 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dieldrin (EXP)

dioxygen (ISO)

entinostat (ISO)

epoxiconazole (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

lead(0) (ISO)

leflunomide (ISO)

melphalan (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

motexafin gadolinium (ISO)

nickel dichloride (EXP)

p-toluidine (EXP)

paracetamol (EXP)

rotenone (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

sulindac (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP,ISO)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc acetate (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ccnj
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	249,608,991 - 249,626,798 (+)	NCBI		GRCr8
mRatBN7.2	1	239,659,588 - 239,677,367 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	247,801,930 - 247,819,734 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	254,499,035 - 254,516,839 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	247,152,062 - 247,169,868 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	259,926,537 - 259,944,275 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	260,093,641 - 260,111,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	259,926,537 - 259,944,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	267,536,058 - 267,553,926 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	245,997,221 - 246,015,024 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	246,111,591 - 246,127,025 (+)	NCBI
Celera	1	235,503,312 - 235,521,115 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

CCNJ
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	96,043,068 - 96,060,870 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	96,043,394 - 96,060,870 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	97,803,340 - 97,820,627 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	97,793,141 - 97,810,612 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	97,793,143 - 97,810,612	NCBI
Celera	10	91,544,376 - 91,561,843 (+)	NCBI		Celera
Cytogenetic Map	10	q24.1	NCBI
HuRef	10	91,430,738 - 91,448,202 (+)	NCBI		HuRef
CHM1_1	10	98,085,000 - 98,102,468 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	96,922,365 - 96,940,179 (+)	NCBI		T2T-CHM13v2.0

Ccnj
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	40,819,345 - 40,837,016 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	40,819,723 - 40,837,016 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	40,830,959 - 40,848,572 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	40,831,279 - 40,848,572 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	40,905,769 - 40,923,062 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	40,884,590 - 40,901,765 (+)	NCBI		MGSCv36	mm8
Celera	19	41,634,343 - 41,651,644 (+)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	34.26	NCBI

Ccnj
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	2,274,702 - 2,293,637 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	2,274,695 - 2,293,637 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCNJ
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	107,936,258 - 107,965,108 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	107,943,642 - 107,970,426 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	92,654,210 - 92,672,135 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	96,160,593 - 96,178,091 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	96,160,593 - 96,178,091 (+)	Ensembl	panpan1.1		panPan2

CCNJ
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	9,491,683 - 9,511,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	9,491,560 - 9,508,910 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	9,676,087 - 9,696,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	9,762,616 - 9,783,120 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	9,762,613 - 9,783,116 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	9,471,374 - 9,491,793 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	9,530,718 - 9,551,393 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	9,674,153 - 9,694,653 (+)	NCBI		UU_Cfam_GSD_1.0

Ccnj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	37,360,681 - 37,379,455 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	3,399,795 - 3,418,579 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	3,399,803 - 3,418,579 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNJ
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	107,505,464 - 107,542,760 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	107,518,663 - 107,542,767 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	117,154,813 - 117,176,800 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNJ
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	89,203,548 - 89,222,006 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	89,205,134 - 89,222,000 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	50,078,674 - 50,096,286 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnj
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	7,431,051 - 7,449,346 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	7,431,033 - 7,448,609 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccnj
96 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	861
Count of miRNA genes:	335
Interacting mature miRNAs:	459
Transcripts:	ENSRNOT00000019521, ENSRNOT00000073537
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	197814409	242814409	Rat
2302375	Bw83	Body weight QTL 83	4.87	0.0002	body mass (VT:0001259)	body weight (CMO:0000012)	1	197697768	242697768	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	201554356	246554356	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	206081677	251081677	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	201554356	246554356	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	123556856	242907031	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	183970203	243914901	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	191019702	246062233	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	201554356	246554356	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	213707201	252085212	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	201554356	246554356	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	197814409	242814409	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	218753816	256448513	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	196248093	241248093	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	197814409	242814409	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
1357399	Bw45	Body weight QTL 45	3.05		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	1	206329708	251329708	Rat
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228985440	245907899	Rat
1357404	Bw42	Body weight QTL 42	4.49	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	206329708	251329708	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	210702053	240947965	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	218753689	245907899	Rat
2292216	Bw80	Body weight QTL 80	3.23	0.0019	body mass (VT:0001259)	body weight (CMO:0000012)	1	213533809	243914901	Rat
10059587	Bw173	Body weight QTL 173	3.23	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	1	202069611	247069611	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	196248093	241248093	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	224054293	243747962	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	224054293	243747962	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	223262787	260522016	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	183970203	243914901	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	197670404	242670404	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	203995416	244113296	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1358191	Ept10	Estrogen-induced pituitary tumorigenesis QTL 10	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	192825253	243914732	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	218748008	257976495	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	201554356	246554356	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
3	7	10	73	31	41	10	28	10	84	47	66	19	33	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019521 ⟹ ENSRNOP00000019521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	260,093,641 - 260,111,254 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073537 ⟹ ENSRNOP00000064122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	259,926,537 - 259,944,271 (+)	Ensembl

RefSeq Acc Id:

NM_001106369 ⟹ NP_001099839

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,608,991 - 249,626,794 (+)	NCBI
mRatBN7.2	1	239,659,588 - 239,677,363 (+)	NCBI
Rnor_6.0	1	259,926,537 - 259,944,271 (+)	NCBI
Rnor_5.0	1	267,536,058 - 267,553,926 (+)	NCBI
RGSC_v3.4	1	245,997,221 - 246,015,024 (+)	RGD
Celera	1	235,503,312 - 235,521,115 (+)	RGD

Sequence:

show sequence

TGTACAGCGAGCCGCCTGCCGGTCCTTTAACAATGGGCGGCGCGAGCGCCCGGGTGCTGGGCCC
AAGCTGAGGTGGGGGCTTCGCGGCCGACTGTCCGCGGCATGAACGCTGCCGGCGCCCCGCGAAC
GCCGGCCCGGCTGGGGCTGTGAGGGCCGCGGTTCCGGACTGAAGTTGCGGCGTCTGGCTGGGCG
CGCCTCCGGCTTCCATGGAGCTGGAGGGGCAGTGGTGGCGAGGACAGCTGGCTGCGGATATTCA
CCAGGCGCTTCGGTACAAGGAGCTGAAGCTGCCTTCTTACAAGGGCCAGTCTCCTCAGCTGAAT
CTCAGGCGGTATTTTGCTGATTTGATCGCCATTGTGAGCAATCGCTTCACACTCTGCCCTTCTG
CCCGACATCTTGCAGTCTACTTGCTGGACCTGTTCATGGACCGCTATGACAGCTCCATCCAGCA
GCTGCATTTAGTTGCACTCTCCTGTCTGCTTCTGGCAAGCAAATTTGAAGAGAAAGAGGACAGC
GTGCCTAAGCTGGAGCAGCTCAACAGCCTGGGCTGCATGACTAATATGAACCTGGTGCTGACGA
AGCAGAACTTGCTGCACATGGAGCTCCTGCTCCTAGAGACCTTTCAGTGGAACCTCTGCCTTCC
CACGGCTGCCCATTTCATTGAGTATTACCTCTCTGAGGCAGTACACGAGACAGACCTTCATGAC
GGCTGGCCGATGGTTTGCCTGGAAAAGACTAAACTTTACATGGCCAAGTATGCGGACTACTTCC
TGGAAGTGTCTCTGCAAGATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCATG
TGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTGCACCGTCTC
ACTGCTTACTCCTGGGACTTCTTGGTGCAGTGCATTGAGCGGCTGCTGCTTGCTCACGACAATG
ACGTGAAAGAAGCAAACAAACAGAGGGGACAGTCGGCTCCTCAGTCAGCACAGCTGACTGTGTT
CCAGACAGCGCAGCCCTCACGGCCAGTTCACTTCCAGCAGCCTCAGTATCTTCATCAGACCTCC
GTGCAGTATCGACATCCTGTGTCAGAACAGCCAAGCCGTCAGCAGATTGTGTCTACCACACACA
CCTCGTCTTACACGCTGCAGACTTGTCCTGCCGGCTTTCAGACCAGTGTTCAGGGCCTTGGCCA
CATGCAGACTGGTGTTGGGATGTCCCTGGCAATACCAGTGGAAGTTAAACCCTGCCTCAGTGTT
TCCTATAACCGGAGTTACCAGATAAACGAGCATTTCCCATGCATTACCCCATGCTTTGAGAGGT
GATGACGTATGTGTGCGGGTCATAGATAACCCAGACGGTTCTGAGACGGAGAGCTCTGGAGCAA
GCTCATGTACTCCTCTTCAGAAGGAAAGGATACAAATAGTACCACAGAGCAATGGCCCCAGCAC
CAGAAGACTGAGTATCCCTTTCAGTACCATGAGTACCTAGGAGGACTTGGAAAGTAGTGACATG
TGTCAAATCCTATGTGACAGAAATGTCCCAGTCCTTGGCTGATGGTTCAAATATTTCGAAATGC
TCAATACAGCAGAAAATTTGCCATTCTAAGATTTGACCTGTGGTGGGCTTTGGCCTTATGCTGG
CATACATGTCAAAGACTTAGTGTTTGTCTGTGGACTTGCCAAACCATCTTCTATGAAGGAAAGT
TACAGTATTAATTTTTGAAGAATTGTTTTAATCCTGCAGCTCAGAGTTTTGTGACCTACTGGTA
GGTTTCTAAATTCAAACTCATCGGTTGCTAAGTATACTAATCTGTGCAGTTAAAAAATCCATAT
GATTTTATATAACTTCATATCATAAATATAGGTGCTGGATTTATATACTACAGTTAGAGGCGAA
GCAGATACATACCTTGAAATCATGGTCATAATTTTCGTTTTGCTCTGCTACCTTTCCCCCTAAG
TGGTCAGCCCCGATTCTTCAGGGTTTAGCACATCTAACTCAGGGAACTTGTAGTACTTGGAAAC
ACTTAGTTGTAACCAACATGCCTTGGGAATGTTAGGACATGAACTACCTGTGTAAGGCTGCAGT
GCCCCTGCTGGGATGAGACTAGATCATAGCACAGGACGAACGACATGGGTCCTGAGTTCGTGCA
TGGACGGCGTGCGCATCACGCAGTGCAGTCAGAGGCCTGTACTCAGATTGGTTGTCACTCGTAA
GACAGTGTTCAGGGGAAGGCCTCCTGGAAAGGGTCAGTGCTAGAGTGGAGTCGGGTAGGATTGT
TCTGGAGTTGAGGGTGGCTAGGGTCGTCCTCAGGTCGGGCTGGTGCCGCACTTTGTGGGGAGGG
TGGTTCTTGAGCACCCTTGGGATCCAGAAAGTCAGGGCAGGGCATTGACTCCAATAGCTGCTTT
CTGTGGTTGACTGTAACTACGCAGGGACAACTCACTGTACTGGGCGTGAGTGAAACAGCAACAG
TCGTCATAGCAAGGGCAACCTGGCCGTGAGGTACCGTCAGGAGGTGGGGAGGACAGACGTGAGA
AGTGATAAGCTGTGAGTCTGGTATACTCTTAACCATGGAAGAGCAGAGAGCTGGTGGAGGGAGA
CTTCCTGGCTTAAGACGAGTCAGATGTGTGTGTTTTTATAAGAGAGCACTTGAATAGAAGGGAA
ACTGTGGCCGCTGAGAGACCATAGTGGGTATTGATGAGAGCTCACTGTAAAGATGTGGATGTGC
AGCAGGAGTCAGTGGCCTTTGCTGGGAAGGGAAGGGCAGGGCAGGGCAGGGCAGGGCTCCACAG
CGTGGTGGACTGAGAGAGGAAGCTCCGGTGGAGAAGTGCGGTGGGTAGCTTCTGCCAACAGGAA
TTCTTAGAGAAATGTTTTCCTTAAAAGGAAGCTAACTTTTATATTTAGCGTACATAAGGCATGG
TGTGGACTTACTAGTCAGTGATGAAAACCACTCAGGTAAGAACACTCGTGAATGGTTTTCAAGC
GTGAAAACTGTTGTAGGAACGTATCGCTTTTCCTCTTTAAAATGGCTGCTAATTGGATTTTATA
AACTCTTAAGAAAACTTGAATTATTAGGAGGAAGTAGGTTCAAAAGATAATGTATCTTTCACGT
TCACAGATAGAGCCCAGCAACATGGAGTCCAATTTTCAGTGTTGTAACTACCTCAGTAATGCTA
TGAATGTAAGAGATTGGGATAGAATCCTAACTTGAAACAACAGTCAGTGCCTGTGGTAACTTAA
TGTCCTGTCAGTGCTTTTATTGATTGGTTATGTGTCATTCTTGTTGTCAAAGAATACTTGCCTT
TTTTAAAAAGCTTATTAACACTTTCCAGTTTATATTTAAAAAGCTAAAGAACACTGGATTAATC
CTTCTGGGGGTGGAGTCAGATAATTCATGACTATTGCTGCATTCCCGGATGGGGAGGCTGGAGA
ATCATGACTGTTTCTAAAAACAGCAGGATTCAATATAAATGCAACTCAACGACAGTTAGCTGGG
GGGTGGGAGTGTGTGGGTTTCATTTTGTTTAATTTATTAATTAGTCTTAAAGGTTTTTTTCTGT
TTTGAGATTACTGGACCATCATTAAATGTGTACTGTGAAAAGATTAATGATGTGTGTAAAGGAC
TTAACCAGAGTCCATGAAATAAACACTATTCAAGTACAAAATGCAAACCAAAATATCTGTGCTC
TGACTAACTACACACAGTGAGTACAGTGCTGGGTCTACACAGCAGGGTCTACACAGCAGGGTCA
GTGAGTGCTGTGCACTTGATTTTAAAATAAAAGTCATTTTCACT

hide sequence

RefSeq Acc Id:

XM_006231376 ⟹ XP_006231438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,609,127 - 249,626,798 (+)	NCBI
mRatBN7.2	1	239,659,613 - 239,677,367 (+)	NCBI
Rnor_6.0	1	259,926,553 - 259,944,275 (+)	NCBI

Sequence:

show sequence

TGCCGGTCCTTTAACAATGGGCGGCGCGAGCGCCCGGGTGCTGGGCCCAAGCTGAGGTGGGGGC
TTCGCGGCCGACTGTCCGCGGCATGAACGCTGCCGGCGCCCCGCGAACGCCGGCCCGGCTGGGG
CTGTGAGGGCCGCGGTTCCGGACTGAAGTTGCGGCGTCTGGCTGGGCGCGCCTCCGGCTTCCAT
GGAGCTGGAGGGGCAGTGGTGGCGAGGACAGCTGGCTGCGGATATTCACCAGGCGCTTCGGTAC
AAGGAGCTGAAGCTGCCTTCTTACAAGGGCCAGTCTCCTCAGCTGAATCTCAGGCGGTATTTTG
CTGATTTGATCGCCATTGTGAGCAATCGCTTCACACTCTGCCCTTCTGCCCGACATCTTGCAGT
CTACTTGCTGGACCTGTTCATGGACCGCTATGACAGCTCCATCCAGCAGCTGCATTTAGTTGCA
CTCTCCTGTCTGCTTCTGGCAAGCAAATTTGAAGAGAAAGAGGACAGCGTGCCTAAGCTGGAGC
AGCTCAACAGCCTGGGCTGCATGACTAATATGAACCTGGTGCTGACGAAGCAGAACTTGCTGCA
CATGGAGCTCCTGCTCCTAGAGACCTTTCAGTGGAACCTCTGCCTTCCCACGGCTGCCCATTTC
ATTGAGTATTACCTCTCTGAGGCAGTACACGAGACAGACCTTCATGACGGCTGGCCGATGGTTT
GCCTGGAAAAGACTAAACTTTACATGGCCAAGTATGCGGACTACTTCCTGGAAGTGTCTCTGCA
AGTAGCTGCTGCATGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACATGGCCCACA
AGACTGCACCGTCTCACTGCTTACTCCTGGGACTTCTTGGTGCAGTGCATTGAGCGGCTGCTGC
TTGCTCACGACAATGACGTGAAAGAAGCAAACAAACAGAGGGGACAGTCGGCTCCTCAGTCAGC
ACAGCTGACTGTGTTCCAGACAGCGCAGCCCTCACGGCCAGTTCACTTCCAGCAGCCTCAGTAT
CTTCATCAGACCTCCGTGCAGTATCGACATCCTGTGTCAGAACAGCCAAGCCGTCAGCAGATTG
TGTCTACCACACACACCTCGTCTTACACGCTGCAGACTTGTCCTGCCGGCTTTCAGACCAGTGT
TCAGGGCCTTGGCCACATGCAGACTGGTGTTGGGATGTCCCTGGCAATACCAGTGGAAGTTAAA
CCCTGCCTCAGTGTTTCCTATAACCGGAGTTACCAGATAAACGAGCATTTCCCATGCATTACCC
CATGCTTTGAGAGGTGATGACGTATGTGTGCGGGTCATAGATAACCCAGACGGTTCTGAGACGG
AGAGCTCTGGAGCAAGCTCATGTACTCCTCTTCAGAAGGAAAGGATACAAATAGTACCACAGAG
CAATGGCCCCAGCACCAGAAGACTGAGTATCCCTTTCAGTACCATGAGTACCTAGGAGGACTTG
GAAAGTAGTGACATGTGTCAAATCCTATGTGACAGAAATGTCCCAGTCCTTGGCTGATGGTTCA
AATATTTCGAAATGCTCAATACAGCAGAAAATTTGCCATTCTAAGATTTGACCTGTGGTGGGCT
TTGGCCTTATGCTGGCATACATGTCAAAGACTTAGTGTTTGTCTGTGGACTTGCCAAACCATCT
TCTATGAAGGAAAGTTACAGTATTAATTTTTGAAGAATTGTTTTAATCCTGCAGCTCAGAGTTT
TGTGACCTACTGGTAGGTTTCTAAATTCAAACTCATCGGTTGCTAAGTATACTAATCTGTGCAG
TTAAAAAATCCATATGATTTTATATAACTTCATATCATAAATATAGGTGCTGGATTTATATACT
ACAGTTAGAGGCGAAGCAGATACATACCTTGAAATCATGGTCATAATTTTCGTTTTGCTCTGCT
ACCTTTCCCCCTAAGTGGTCAGCCCCGATTCTTCAGGGTTTAGCACATCTAACTCAGGGAACTT
GTAGTACTTGGAAACACTTAGTTGTAACCAACATGCCTTGGGAATGTTAGGACATGAACTACCT
GTGTAAGGCTGCAGTGCCCCTGCTGGGATGAGACTAGATCATAGCACAGGACGAACGACATGGG
TCCTGAGTTCGTGCATGGACGGCGTGCGCATCACGCAGTGCAGTCAGAGGCCTGTACTCAGATT
GGTTGTCACTCGTAAGACAGTGTTCAGGGGAAGGCCTCCTGGAAAGGGTCAGTGCTAGAGTGGA
GTCGGGTAGGATTGTTCTGGAGTTGAGGGTGGCTAGGGTCGTCCTCAGGTCGGGCTGGTGCCGC
ACTTTGTGGGGAGGGTGGTTCTTGAGCACCCTTGGGATCCAGAAAGTCAGGGCAGGGCATTGAC
TCCAATAGCTGCTTTCTGTGGTTGACTGTAACTACGCAGGGACAACTCACTGTACTGGGCGTGA
GTGAAACAGCAACAGTCGTCATAGCAAGGGCAACCTGGCCGTGAGGTACCGTCAGGAGGTGGGG
AGGACAGACGTGAGAAGTGATAAGCTGTGAGTCTGGTATACTCTTAACCATGGAAGAGCAGAGA
GCTGGTGGAGGGAGACTTCCTGGCTTAAGACGAGTCAGATGTGTGTGTTTTTATAAGAGAGCAC
TTGAATAGAAGGGAAACTGTGGCCGCTGAGAGACCATAGTGGGTATTGATGAGAGCTCACTGTA
AAGATGTGGATGTGCAGCAGGAGTCAGTGGCCTTTGCTGGGAAGGGAAGGGCAGGGCAGGGCAG
GGCAGGGCTCCACAGCGTGGTGGACTGAGAGAGGAAGCTCCGGTGGAGAAGTGCGGTGGGTAGC
TTCTGCCAACAGGAATTCTTAGAGAAATGTTTTCCTTAAAAGGAAGCTAACTTTTATATTTAGC
GTACATAAGGCATGGTGTGGACTTACTAGTCAGTGATGAAAACCACTCAGGTAAGAACACTCGT
GAATGGTTTTCAAGCGTGAAAACTGTTGTAGGAACGTATCGCTTTTCCTCTTTAAAATGGCTGC
TAATTGGATTTTATAAACTCTTAAGAAAACTTGAATTATTAGGAGGAAGTAGGTTCAAAAGATA
ATGTATCTTTCACGTTCACAGATAGAGCCCAGCAACATGGAGTCCAATTTTCAGTGTTGTAACT
ACCTCAGTAATGCTATGAATGTAAGAGATTGGGATAGAATCCTAACTTGAAACAACAGTCAGTG
CCTGTGGTAACTTAATGTCCTGTCAGTGCTTTTATTGATTGGTTATGTGTCATTCTTGTTGTCA
AAGAATACTTGCCTTTTTTAAAAAGCTTATTAACACTTTCCAGTTTATATTTAAAAAGCTAAAG
AACACTGGATTAATCCTTCTGGGGGTGGAGTCAGATAATTCATGACTATTGCTGCATTCCCGGA
TGGGGAGGCTGGAGAATCATGACTGTTTCTAAAAACAGCAGGATTCAATATAAATGCAACTCAA
CGACAGTTAGCTGGGGGGTGGGAGTGTGTGGGTTTCATTTTGTTTAATTTATTAATTAGTCTTA
AAGGTTTTTTTCTGTTTTGAGATTACTGGACCATCATTAAATGTGTACTGTGAAAAGATTAATG
ATGTGTGTAAAGGACTTAACCAGAGTCCATGAAATAAACACTATTCAAGTACAAAATGCAAACC
AAAATATCTGTGCTCTGACTAACTACACACAGTGAGTACAGTGCTGGGTCTACACAGCAGGGTC
TACACAGCAGGGTCAGTGAGTGCTGTGCACTTGATTTTAAAATAAAAGTCATTTTCACTAAAA

hide sequence

RefSeq Acc Id:

XM_006231377 ⟹ XP_006231439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,609,127 - 249,626,798 (+)	NCBI
mRatBN7.2	1	239,659,613 - 239,677,367 (+)	NCBI
Rnor_6.0	1	259,926,553 - 259,944,275 (+)	NCBI
Rnor_5.0	1	267,369,673 - 267,387,472 (+)	NCBI

Sequence:

show sequence

TGCCGGTCCTTTAACAATGGGCGGCGCGAGCGCCCGGGTGCTGGGCCCAAGCTGAGGTGGGGGC
TTCGCGGCCGACTGTCCGCGGCATGAACGCTGCCGGCGCCCCGCGAACGCCGGCCCGGCTGGGG
CTGTGAGGGCCGCGGTTCCGGACTGAAGTTGCGGCGTCTGGCTGGGCGCGCCTCCGGCTTCCAT
GGAGCTGGAGGGGCAGTGGTGGCGAGGACAGCTGGCTGCGGATATTCACCAGGCGCTTCGGTAC
AAGGAGCTGAAGCTGCCTTCTTACAAGGGCCAGTCTCCTCAGCTGAATCTCAGGCGGTATTTTG
CTGATTTGATCGCCATTGTGAGCAATCGCTTCACACTCTGCCCTTCTGCCCGACATCTTGCAGT
CTACTTGCTGGACCTGTTCATGGACCGCTATGACAGCTCCATCCAGCAGCTGCATTTAGTTGCA
CTCTCCTGTCTGCTTCTGGCAAGCAAATTTGAAGAGAAAGAGGACAGCGTGCCTAAGCTGGAGC
AGCTCAACAGCCTGGGCTGCATGACTAATATGAACCTGGTGCTGACGAAGCAGAACTTGCTGCA
CATGGAGCTCCTGCTCCTAGAGACCTTTCAGTGGAACCTCTGCCTTCCCACGGCTGCCCATTTC
ATTGAGTATTACCTCTCTGAGGCAGTACACGAGACAGACCTTCATGACGGCTGGCCGATGGTTT
GCCTGGAAAAGACTAAACTTTACATGGCCAAGTATGCGGACTACTTCCTGGAAGTGTCTCTGCA
AGCTGCTGCATGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGA
CTGCACCGTCTCACTGCTTACTCCTGGGACTTCTTGGTGCAGTGCATTGAGCGGCTGCTGCTTG
CTCACGACAATGACGTGAAAGAAGCAAACAAACAGAGGGGACAGTCGGCTCCTCAGTCAGCACA
GCTGACTGTGTTCCAGACAGCGCAGCCCTCACGGCCAGTTCACTTCCAGCAGCCTCAGTATCTT
CATCAGACCTCCGTGCAGTATCGACATCCTGTGTCAGAACAGCCAAGCCGTCAGCAGATTGTGT
CTACCACACACACCTCGTCTTACACGCTGCAGACTTGTCCTGCCGGCTTTCAGACCAGTGTTCA
GGGCCTTGGCCACATGCAGACTGGTGTTGGGATGTCCCTGGCAATACCAGTGGAAGTTAAACCC
TGCCTCAGTGTTTCCTATAACCGGAGTTACCAGATAAACGAGCATTTCCCATGCATTACCCCAT
GCTTTGAGAGGTGATGACGTATGTGTGCGGGTCATAGATAACCCAGACGGTTCTGAGACGGAGA
GCTCTGGAGCAAGCTCATGTACTCCTCTTCAGAAGGAAAGGATACAAATAGTACCACAGAGCAA
TGGCCCCAGCACCAGAAGACTGAGTATCCCTTTCAGTACCATGAGTACCTAGGAGGACTTGGAA
AGTAGTGACATGTGTCAAATCCTATGTGACAGAAATGTCCCAGTCCTTGGCTGATGGTTCAAAT
ATTTCGAAATGCTCAATACAGCAGAAAATTTGCCATTCTAAGATTTGACCTGTGGTGGGCTTTG
GCCTTATGCTGGCATACATGTCAAAGACTTAGTGTTTGTCTGTGGACTTGCCAAACCATCTTCT
ATGAAGGAAAGTTACAGTATTAATTTTTGAAGAATTGTTTTAATCCTGCAGCTCAGAGTTTTGT
GACCTACTGGTAGGTTTCTAAATTCAAACTCATCGGTTGCTAAGTATACTAATCTGTGCAGTTA
AAAAATCCATATGATTTTATATAACTTCATATCATAAATATAGGTGCTGGATTTATATACTACA
GTTAGAGGCGAAGCAGATACATACCTTGAAATCATGGTCATAATTTTCGTTTTGCTCTGCTACC
TTTCCCCCTAAGTGGTCAGCCCCGATTCTTCAGGGTTTAGCACATCTAACTCAGGGAACTTGTA
GTACTTGGAAACACTTAGTTGTAACCAACATGCCTTGGGAATGTTAGGACATGAACTACCTGTG
TAAGGCTGCAGTGCCCCTGCTGGGATGAGACTAGATCATAGCACAGGACGAACGACATGGGTCC
TGAGTTCGTGCATGGACGGCGTGCGCATCACGCAGTGCAGTCAGAGGCCTGTACTCAGATTGGT
TGTCACTCGTAAGACAGTGTTCAGGGGAAGGCCTCCTGGAAAGGGTCAGTGCTAGAGTGGAGTC
GGGTAGGATTGTTCTGGAGTTGAGGGTGGCTAGGGTCGTCCTCAGGTCGGGCTGGTGCCGCACT
TTGTGGGGAGGGTGGTTCTTGAGCACCCTTGGGATCCAGAAAGTCAGGGCAGGGCATTGACTCC
AATAGCTGCTTTCTGTGGTTGACTGTAACTACGCAGGGACAACTCACTGTACTGGGCGTGAGTG
AAACAGCAACAGTCGTCATAGCAAGGGCAACCTGGCCGTGAGGTACCGTCAGGAGGTGGGGAGG
ACAGACGTGAGAAGTGATAAGCTGTGAGTCTGGTATACTCTTAACCATGGAAGAGCAGAGAGCT
GGTGGAGGGAGACTTCCTGGCTTAAGACGAGTCAGATGTGTGTGTTTTTATAAGAGAGCACTTG
AATAGAAGGGAAACTGTGGCCGCTGAGAGACCATAGTGGGTATTGATGAGAGCTCACTGTAAAG
ATGTGGATGTGCAGCAGGAGTCAGTGGCCTTTGCTGGGAAGGGAAGGGCAGGGCAGGGCAGGGC
AGGGCTCCACAGCGTGGTGGACTGAGAGAGGAAGCTCCGGTGGAGAAGTGCGGTGGGTAGCTTC
TGCCAACAGGAATTCTTAGAGAAATGTTTTCCTTAAAAGGAAGCTAACTTTTATATTTAGCGTA
CATAAGGCATGGTGTGGACTTACTAGTCAGTGATGAAAACCACTCAGGTAAGAACACTCGTGAA
TGGTTTTCAAGCGTGAAAACTGTTGTAGGAACGTATCGCTTTTCCTCTTTAAAATGGCTGCTAA
TTGGATTTTATAAACTCTTAAGAAAACTTGAATTATTAGGAGGAAGTAGGTTCAAAAGATAATG
TATCTTTCACGTTCACAGATAGAGCCCAGCAACATGGAGTCCAATTTTCAGTGTTGTAACTACC
TCAGTAATGCTATGAATGTAAGAGATTGGGATAGAATCCTAACTTGAAACAACAGTCAGTGCCT
GTGGTAACTTAATGTCCTGTCAGTGCTTTTATTGATTGGTTATGTGTCATTCTTGTTGTCAAAG
AATACTTGCCTTTTTTAAAAAGCTTATTAACACTTTCCAGTTTATATTTAAAAAGCTAAAGAAC
ACTGGATTAATCCTTCTGGGGGTGGAGTCAGATAATTCATGACTATTGCTGCATTCCCGGATGG
GGAGGCTGGAGAATCATGACTGTTTCTAAAAACAGCAGGATTCAATATAAATGCAACTCAACGA
CAGTTAGCTGGGGGGTGGGAGTGTGTGGGTTTCATTTTGTTTAATTTATTAATTAGTCTTAAAG
GTTTTTTTCTGTTTTGAGATTACTGGACCATCATTAAATGTGTACTGTGAAAAGATTAATGATG
TGTGTAAAGGACTTAACCAGAGTCCATGAAATAAACACTATTCAAGTACAAAATGCAAACCAAA
ATATCTGTGCTCTGACTAACTACACACAGTGAGTACAGTGCTGGGTCTACACAGCAGGGTCTAC
ACAGCAGGGTCAGTGAGTGCTGTGCACTTGATTTTAAAATAAAAGTCATTTTCACTAAAA

hide sequence

RefSeq Acc Id:

XM_039109159 ⟹ XP_038965087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,614,866 - 249,626,798 (+)	NCBI
mRatBN7.2	1	239,665,435 - 239,677,367 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099839	(Get FASTA)	NCBI Sequence Viewer
	XP_006231438	(Get FASTA)	NCBI Sequence Viewer
	XP_006231439	(Get FASTA)	NCBI Sequence Viewer
	XP_038965087	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94188	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001099839 ⟸ NM_001106369

- UniProtKB:

A6JH64 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLNLRRYFADLIAIVSNRFTLCPSARHLA
VYLLDLFMDRYDSSIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLL
HMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSL
QDYAFLNYAPSLVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLLAHDNDVKEA
NKQRGQSAPQSAQLTVFQTAQPSRPVHFQQPQYLHQTSVQYRHPVSEQPSRQQIVSTTHTSSYT
LQTCPAGFQTSVQGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER

hide sequence

RefSeq Acc Id:

XP_006231438 ⟸ XM_006231376

- Peptide Label:

isoform X1

- Sequence:

show sequence

MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLNLRRYFADLIAIVSNRFTLCPSARHLA
VYLLDLFMDRYDSSIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLL
HMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSL
QVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLLAHDNDVKEANKQRGQSAPQS
AQLTVFQTAQPSRPVHFQQPQYLHQTSVQYRHPVSEQPSRQQIVSTTHTSSYTLQTCPAGFQTS
VQGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER

hide sequence

RefSeq Acc Id:

XP_006231439 ⟸ XM_006231377

- Peptide Label:

isoform X2

- Sequence:

show sequence

MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLNLRRYFADLIAIVSNRFTLCPSARHLA
VYLLDLFMDRYDSSIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLL
HMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSL
QAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLLAHDNDVKEANKQRGQSAPQSA
QLTVFQTAQPSRPVHFQQPQYLHQTSVQYRHPVSEQPSRQQIVSTTHTSSYTLQTCPAGFQTSV
QGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER

hide sequence

RefSeq Acc Id:	XP_038965087 ⟸ XM_039109159
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000019521 ⟸ ENSRNOT00000019521

Ensembl Acc Id:

ENSRNOP00000064122 ⟸ ENSRNOT00000073537

Protein Domains

Cyclin C-terminal Cyclin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A1H5-F1-model_v2	AlphaFold	D4A1H5	1-379	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306399	AgrOrtholog
BioCyc Gene	G2FUF-55699	BioCyc
Ensembl Genes	ENSRNOG00000014551	Ensembl
	ENSRNOG00000048973	Ensembl
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin	UniProtKB/TrEMBL
	Cyclin-like_dom	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin_C-dom	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
KEGG Report	rno:294053	UniProtKB/TrEMBL
NCBI Gene	294053	ENTREZGENE
PANTHER	CYCLIN-J	UniProtKB/TrEMBL
	CYCLINS	UniProtKB/TrEMBL
Pfam	Cyclin_C	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
PhenoGen	Ccnj	PhenoGen
RatGTEx	ENSRNOG00000014551	RatGTEx
	ENSRNOG00000048973	RatGTEx
SMART	CYCLIN	UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/TrEMBL
Superfamily-SCOP	Cyclin-like	UniProtKB/TrEMBL
UniProt	A6JH64	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ccnj	cyclin J	NEWGENE_1306399	cyclin J	Data merged from RGD:11506373	737654	PROVISIONAL
2016-08-02	NEWGENE_1306399	cyclin J			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Ccnj	cyclin J	Ccnj_predicted	cyclin J (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ccnj_predicted	cyclin J (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar