Sgms1 (sphingomyelin synthase 1) - Rat Genome Database

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Gene: Sgms1 (sphingomyelin synthase 1) Rattus norvegicus
Analyze
Symbol: Sgms1
Name: sphingomyelin synthase 1
RGD ID: 727912
Description: Predicted to enable ceramide cholinephosphotransferase activity; ceramide phosphoethanolamine synthase activity; and sphingomyelin synthase activity. Involved in cellular response to lipopolysaccharide; cellular response to tumor necrosis factor; and positive regulation of gene expression. Predicted to be located in Golgi trans cisterna. Predicted to be active in Golgi membrane; endoplasmic reticulum membrane; and plasma membrane. Used to study pulmonary edema. Biomarker of pulmonary edema. Orthologous to human SGMS1 (sphingomyelin synthase 1); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC93062; Mob; mob-1; phosphatidylcholine:ceramide cholinephosphotransferase 1; Tmem23; transmembrane protein 23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,409,991 - 239,681,195 (-)NCBIGRCr8
mRatBN7.21229,996,673 - 230,259,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1238,362,330 - 238,621,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,292,015 - 245,550,709 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01238,127,826 - 238,388,826 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,692,448 - 250,951,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,691,370 - 250,951,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01257,923,300 - 258,182,214 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,133,441 - 236,396,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,319,654 - 236,381,276 (-)NCBI
Celera1227,118,516 - 227,377,318 (-)NCBICelera
Cytogenetic Map1q52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Cockayne syndrome B  (ISO)
megacolon  (ISO)
pulmonary edema  (IDA,IEP,IMP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
cadmium atom  (ISO)
calcium silicate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP,ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
heptachlor  (EXP)
indometacin  (ISO)
isoprenaline  (ISO)
leflunomide  (EXP,ISO)
lithocholic acid  (ISO)
melphalan  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
tetracycline  (ISO)
tetraphene  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. MOB-1 and TNF-alpha interact to induce microvascular lung injury. Rabinovici R, etal., Shock 2002 Sep;18(3):261-4.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14685263   PMID:14976195   PMID:15489334   PMID:16226406   PMID:19946888   PMID:21980337   PMID:25605874   PMID:26274505   PMID:29294205  


Genomics

Comparative Map Data
Sgms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,409,991 - 239,681,195 (-)NCBIGRCr8
mRatBN7.21229,996,673 - 230,259,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1238,362,330 - 238,621,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,292,015 - 245,550,709 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01238,127,826 - 238,388,826 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,692,448 - 250,951,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,691,370 - 250,951,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01257,923,300 - 258,182,214 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,133,441 - 236,396,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,319,654 - 236,381,276 (-)NCBI
Celera1227,118,516 - 227,377,318 (-)NCBICelera
Cytogenetic Map1q52NCBI
SGMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381050,305,600 - 50,625,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1050,305,586 - 50,625,163 (-)EnsemblGRCh38hg38GRCh38
GRCh371052,065,360 - 52,383,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361051,735,351 - 52,053,743 (-)NCBINCBI36Build 36hg18NCBI36
Build 341051,735,351 - 52,053,743NCBI
Celera1075,221,199 - 75,539,540 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1046,064,748 - 46,384,168 (-)NCBIHuRef
CHM1_11052,347,208 - 52,665,557 (-)NCBICHM1_1
T2T-CHM13v2.01051,153,786 - 51,472,591 (-)NCBIT2T-CHM13v2.0
Sgms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391932,100,127 - 32,367,285 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1932,100,127 - 32,367,114 (-)EnsemblGRCm39 Ensembl
GRCm381932,122,727 - 32,389,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1932,122,727 - 32,389,714 (-)EnsemblGRCm38mm10GRCm38
MGSCv371932,197,217 - 32,462,944 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361932,188,727 - 32,314,032 (-)NCBIMGSCv36mm8
Celera1932,909,133 - 33,168,704 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1926.68NCBI
Sgms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,784,751 - 5,822,488 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554255,507,905 - 5,819,357 (+)NCBIChiLan1.0ChiLan1.0
SGMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2862,619,746 - 62,933,907 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11062,625,068 - 62,939,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01046,960,159 - 47,273,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11049,076,976 - 49,392,937 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1049,076,984 - 49,116,154 (-)Ensemblpanpan1.1panPan2
SGMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12637,243,388 - 37,472,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2637,244,900 - 37,348,802 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2637,128,050 - 37,357,239 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02638,775,863 - 39,005,440 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2638,776,907 - 39,026,132 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12636,683,424 - 36,912,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02636,264,203 - 36,493,530 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02637,503,839 - 37,732,954 (-)NCBIUU_Cfam_GSD_1.0
Sgms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721376,808,901 - 77,088,722 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367351,943,352 - 1,984,141 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367351,702,754 - 1,984,141 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,147,272 - 99,185,082 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11499,147,266 - 99,458,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214107,987,111 - 108,238,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1980,524,115 - 80,646,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl980,524,055 - 80,562,945 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604841,180,929 - 41,498,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgms1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479113,097,808 - 13,146,544 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479113,096,268 - 13,490,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgms1
1136 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:76
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000054761
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat

Markers in Region
RH130972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21230,259,662 - 230,259,812 (+)MAPPERmRatBN7.2
Rnor_6.01250,951,757 - 250,951,906NCBIRnor6.0
Rnor_5.01258,182,286 - 258,182,435UniSTSRnor5.0
RGSC_v3.41236,396,703 - 236,396,852UniSTSRGSC3.4
Celera1227,377,390 - 227,377,539UniSTS
RH 3.4 Map11616.42UniSTS
Cytogenetic Map1q52UniSTS
RH144312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21230,112,036 - 230,112,170 (+)MAPPERmRatBN7.2
Rnor_6.01250,804,285 - 250,804,418NCBIRnor6.0
Rnor_5.01258,035,048 - 258,035,181UniSTSRnor5.0
RGSC_v3.41236,249,020 - 236,249,153UniSTSRGSC3.4
Celera1227,229,997 - 227,230,130UniSTS
Cytogenetic Map1q52UniSTS
BE106238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21230,032,447 - 230,032,623 (+)MAPPERmRatBN7.2
Rnor_6.01250,725,102 - 250,725,277NCBIRnor6.0
Rnor_5.01257,955,954 - 257,956,129UniSTSRnor5.0
RGSC_v3.41236,168,282 - 236,168,457UniSTSRGSC3.4
Celera1227,150,244 - 227,150,419UniSTS
RH 3.4 Map11716.2UniSTS
Cytogenetic Map1q52UniSTS
BF055346  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21229,997,886 - 229,997,993 (+)MAPPERmRatBN7.2
Rnor_6.01250,692,217 - 250,692,323NCBIRnor6.0
Rnor_5.01257,923,069 - 257,923,175UniSTSRnor5.0
RGSC_v3.41236,133,210 - 236,133,316UniSTSRGSC3.4
Celera1227,118,285 - 227,118,391UniSTS
Cytogenetic Map1q52UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_181386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF461433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY280961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000054761   ⟹   ENSRNOP00000051643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)Ensembl
Rnor_6.0 Ensembl1250,692,449 - 250,951,697 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079227   ⟹   ENSRNOP00000070714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1230,032,127 - 230,119,931 (-)Ensembl
Rnor_6.0 Ensembl1250,692,135 - 250,774,105 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079942   ⟹   ENSRNOP00000075395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1229,998,124 - 230,034,425 (-)Ensembl
Rnor_6.0 Ensembl1250,692,452 - 250,727,079 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087588   ⟹   ENSRNOP00000075286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1250,691,370 - 250,727,218 (-)Ensembl
RefSeq Acc Id: NM_181386   ⟹   NP_852051
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,672,893 (-)NCBI
mRatBN7.21229,996,673 - 230,259,591 (-)NCBI
Rnor_6.01250,692,448 - 250,951,685 (-)NCBI
Rnor_5.01257,923,300 - 258,182,214 (-)NCBI
RGSC_v3.41236,133,441 - 236,396,631 (-)RGD
Celera1227,118,516 - 227,377,318 (-)RGD
Sequence:
RefSeq Acc Id: XM_039080981   ⟹   XP_038936909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
mRatBN7.21229,996,673 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039080983   ⟹   XP_038936911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,670,946 (-)NCBI
mRatBN7.21229,996,673 - 230,257,746 (-)NCBI
RefSeq Acc Id: XM_039080988   ⟹   XP_038936916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
mRatBN7.21229,996,673 - 230,130,002 (-)NCBI
RefSeq Acc Id: XM_039080994   ⟹   XP_038936922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
mRatBN7.21229,996,673 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039080997   ⟹   XP_038936925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
mRatBN7.21229,996,673 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039080998   ⟹   XP_038936926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,533,070 (-)NCBI
mRatBN7.21229,996,673 - 230,119,752 (-)NCBI
RefSeq Acc Id: XM_039081001   ⟹   XP_038936929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,520,055 (-)NCBI
mRatBN7.21229,996,673 - 230,106,741 (-)NCBI
RefSeq Acc Id: XM_039081009   ⟹   XP_038936937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,485,556 (-)NCBI
mRatBN7.21229,996,673 - 230,072,230 (-)NCBI
RefSeq Acc Id: XM_039081014   ⟹   XP_038936942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,671,409 (-)NCBI
mRatBN7.21230,011,322 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039081018   ⟹   XP_038936946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,435,534 - 239,671,409 (-)NCBI
mRatBN7.21230,022,238 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_063265725   ⟹   XP_063121795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265730   ⟹   XP_063121800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265732   ⟹   XP_063121802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265737   ⟹   XP_063121807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265740   ⟹   XP_063121810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265743   ⟹   XP_063121813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265749   ⟹   XP_063121819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,540,936 (-)NCBI
RefSeq Acc Id: XM_063265754   ⟹   XP_063121824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265759   ⟹   XP_063121829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265764   ⟹   XP_063121834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,056 (-)NCBI
RefSeq Acc Id: XM_063265767   ⟹   XP_063121837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,081 (-)NCBI
RefSeq Acc Id: XM_063265770   ⟹   XP_063121840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265776   ⟹   XP_063121846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265777   ⟹   XP_063121847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265781   ⟹   XP_063121851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265786   ⟹   XP_063121856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,540,942 (-)NCBI
RefSeq Acc Id: XM_063265790   ⟹   XP_063121860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265793   ⟹   XP_063121863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,069 (-)NCBI
RefSeq Acc Id: XM_063265797   ⟹   XP_063121867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265806   ⟹   XP_063121876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,412,554 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265816   ⟹   XP_063121886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265819   ⟹   XP_063121889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265822   ⟹   XP_063121892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265823   ⟹   XP_063121893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265831   ⟹   XP_063121901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,540,974 (-)NCBI
RefSeq Acc Id: XM_063265836   ⟹   XP_063121906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,416,718 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265838   ⟹   XP_063121908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,416,718 - 239,681,195 (-)NCBI
RefSeq Acc Id: XR_005487755
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,435,590 - 239,671,409 (-)NCBI
mRatBN7.21230,022,366 - 230,258,099 (-)NCBI
RefSeq Acc Id: XR_010053998
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,671,409 (-)NCBI
RefSeq Acc Id: XR_010053999
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,543,465 (-)NCBI
RefSeq Acc Id: XR_010054000
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,671,409 (-)NCBI
RefSeq Acc Id: XR_010054001
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,543,465 (-)NCBI
Protein Sequences
Protein RefSeqs NP_852051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936909 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936916 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936937 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936946 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121795 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121800 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121802 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121807 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121810 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121813 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121819 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121824 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121829 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121834 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121837 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121840 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121846 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121847 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121851 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121856 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121860 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121863 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121867 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121876 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121886 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121889 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121892 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121893 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121901 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121906 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121908 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78690 (Get FASTA)   NCBI Sequence Viewer  
  AAH81693 (Get FASTA)   NCBI Sequence Viewer  
  AAL67569 (Get FASTA)   NCBI Sequence Viewer  
  AAP37281 (Get FASTA)   NCBI Sequence Viewer  
  EDM13135 (Get FASTA)   NCBI Sequence Viewer  
  EDM13136 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051643.1
  ENSRNOP00000070714.2
  ENSRNOP00000075395.1
  ENSRNOP00055042182
  ENSRNOP00060042352
  ENSRNOP00065041696
GenBank Protein Q7TSX5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_852051   ⟸   NM_181386
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070714   ⟸   ENSRNOT00000079227
Ensembl Acc Id: ENSRNOP00000075286   ⟸   ENSRNOT00000087588
Ensembl Acc Id: ENSRNOP00000075395   ⟸   ENSRNOT00000079942
Ensembl Acc Id: ENSRNOP00000051643   ⟸   ENSRNOT00000054761
RefSeq Acc Id: XP_038936925   ⟸   XM_039080997
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936909   ⟸   XM_039080981
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936922   ⟸   XM_039080994
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936911   ⟸   XM_039080983
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936916   ⟸   XM_039080988
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936926   ⟸   XM_039080998
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936929   ⟸   XM_039081001
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936937   ⟸   XM_039081009
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936942   ⟸   XM_039081014
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936946   ⟸   XM_039081018
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121867   ⟸   XM_063265797
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121795   ⟸   XM_063265725
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121860   ⟸   XM_063265790
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121824   ⟸   XM_063265754
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121840   ⟸   XM_063265770
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121813   ⟸   XM_063265743
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121807   ⟸   XM_063265737
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121800   ⟸   XM_063265730
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121802   ⟸   XM_063265732
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121829   ⟸   XM_063265759
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121837   ⟸   XM_063265767
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121863   ⟸   XM_063265793
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121834   ⟸   XM_063265764
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121851   ⟸   XM_063265781
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121846   ⟸   XM_063265776
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121847   ⟸   XM_063265777
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121810   ⟸   XM_063265740
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121856   ⟸   XM_063265786
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121819   ⟸   XM_063265749
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121876   ⟸   XM_063265806
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121908   ⟸   XM_063265838
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121906   ⟸   XM_063265836
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121892   ⟸   XM_063265822
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121886   ⟸   XM_063265816
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121889   ⟸   XM_063265819
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121893   ⟸   XM_063265823
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121901   ⟸   XM_063265831
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TSX5-F1-model_v2 AlphaFold Q7TSX5 1-419 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690857
Promoter ID:EPDNEW_R1382
Type:multiple initiation site
Name:Sgms1_1
Description:sphingomyelin synthase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01250,951,718 - 250,951,778EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727912 AgrOrtholog
BioCyc Gene G2FUF-55924 BioCyc
Ensembl Genes ENSRNOG00000012536 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055029549 UniProtKB/Swiss-Prot
  ENSRNOG00060029314 UniProtKB/Swiss-Prot
  ENSRNOG00065029362 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000054761.2 UniProtKB/Swiss-Prot
  ENSRNOT00000079227.2 UniProtKB/TrEMBL
  ENSRNOT00000079942.2 UniProtKB/TrEMBL
  ENSRNOT00055051208 UniProtKB/Swiss-Prot
  ENSRNOT00060050912 UniProtKB/Swiss-Prot
  ENSRNOT00065050729 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113038 IMAGE-MGC_LOAD
  IMAGE:7132545 IMAGE-MGC_LOAD
InterPro SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Sphingomyelin_synth-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sphingomyelin_synth-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:353229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93062 IMAGE-MGC_LOAD
  MGC:93063 IMAGE-MGC_LOAD
NCBI Gene 353229 ENTREZGENE
PANTHER PHOSPHATIDYLCHOLINE:CERAMIDE CHOLINEPHOSPHOTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21290 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAP2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sgms1 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012536 RatGTEx
  ENSRNOG00055029549 RatGTEx
  ENSRNOG00060029314 RatGTEx
  ENSRNOG00065029362 RatGTEx
Superfamily-SCOP SAM_homology UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JYM5 ENTREZGENE, UniProtKB/TrEMBL
  A6I104 ENTREZGENE, UniProtKB/TrEMBL
  A6I105 ENTREZGENE, UniProtKB/TrEMBL
  Q6AZ82_RAT UniProtKB/TrEMBL
  Q7TSX5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Sgms1  sphingomyelin synthase 1  Tmem23  transmembrane protein 23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Tmem23  transmembrane protein 23  Mob  mob protein  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process interacts with TNF-alpha to promote lung inflammation 1302423