D14Rat3 Marker Search Result - Rat Genome Database
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Marker: D14Rat3

Symbol: D14Rat3
Also known as: R0047-B05; oxsts6211; R047-B05; 
RGD ID: 37030
Expected Size: 159 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01410,729,098 - 10,729,268NCBIRnor6.0
Rnor_5.01410,676,485 - 10,676,655UniSTSRnor5.0
RGSC_v3.41410,340,102 - 10,340,272UniSTSRGSC3.4
RGSC_v3.41410,339,971 - 10,340,377RGDRGSC3.4
RGSC_v3.11410,340,102 - 10,340,272RGD
Celera149,197,754 - 9,197,924UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14152.08RGD
RH 3.4 Map14152.08UniSTS
RH 2.0 Map14162.0RGD
SHRSP x BN Map144.62RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   LOU/CHan   MNR/N   MR/Pit   WF/Pit   WIST/Nhg   SR/Jr   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Niddm20   Niddm53   Pia20  
Genes:   Cops4   LOC100360326  


Annotation



Strains and Sequence

Sequence
 
Forward Primer CAGGTCAGCCAAGACTACCC
Reverse Primer CTGGATGCTCTCTACTGCCC
 
Template
GCCTTTGACCCGTAAGCAAGTGTTCTGTGTGGGCTACTCAGGGGCTCCTTCTCCATAGTTTTGT
GTCCTCTATTGGTGAATTTGCTCTTAAAATGGTTGGGCTTCTGGATGCTCTCTACTGCCCTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTAGGTATAGGTA
TAGGTATAGGTATAGGTGTTGGTGGGAACTAGGGGTAGACAAAATCTTTCTGGGTAGTCTTGGC
TGACCTGTGGCCCACTGTCCTCCCTTACAGGCTGCATCACTATGCCCTCTAGTGTTGATAAGTA
TAGACTAAGGTGGAGGTTTTGTGTGAGAGAGCAGTATCCTGTAAGCTTTATTTTGGCAGAATTG
CATTGTTAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGT
TATCCGCTCAAATTCCACACNACATACGAGCCGGAAGCATAAAGNGNNNGCCCGNGNTGCCNNN
GAGNTCNGGACTCACATTNNTNNGTGCGCNNNCNTGCTTTCAGTCGGGAACTGTCGTGCAGCTG
CATTATGATCGGCACCGCGGGGAGAGCGGTTCGT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1302952Cops4COP9 signalosome subunit 4141071886310749134Rat

Nucleotide Sequences
GenBank Nucleotide CH474022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14222782512680613Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14483323310729268Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100360326 UniSTS
  326530 UniSTS
  360915 UniSTS
  387456 UniSTS
  408140 UniSTS
UniSTS 118371 UniSTS