Nfkb2 (nuclear factor kappa B subunit 2) - Rat Genome Database

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Gene: Nfkb2 (nuclear factor kappa B subunit 2) Rattus norvegicus
Analyze
Symbol: Nfkb2
Name: nuclear factor kappa B subunit 2
RGD ID: 1307189
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in response to cytokine and response to lipopolysaccharide. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of Bcl3/NF-kappaB2 complex. Used to study Parkinsonism. Human ortholog(s) of this gene implicated in common variable immunodeficiency 10. Orthologous to human NFKB2 (nuclear factor kappa B subunit 2); PARTICIPATES IN adenosine signaling pathway; interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC309452; MGC93816; nuclear factor NF-kappa-B p100 subunit; nuclear factor of kappa light polypeptide gene enhancer in B-cells 2; nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100; RGD1307189; similar to nuclear factor kappa B subunit p100
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,106,010 - 255,114,649 (+)NCBIGRCr8
mRatBN7.21245,164,586 - 245,173,225 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,165,950 - 245,173,213 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,288,361 - 253,294,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01259,983,048 - 259,989,300 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,634,805 - 252,641,057 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,050,634 - 266,059,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,053,002 - 266,059,256 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,481,574 - 273,490,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,521,559 - 251,527,815 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,784,632 - 251,790,888 (+)NCBI
Celera1240,949,824 - 240,956,078 (+)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Nfkb2Ratatrophic gastritis  ISONfkb2 (Mus musculus)40902973associated with Helicobacter InfectionsRGD 
Nfkb2RatCerebral Hemorrhage  IDA 2302394protein:increased activity:striatumRGD 
Nfkb2RatExperimental Diabetes Mellitus  IEP 2298775 RGD 
Nfkb2RatIntestinal Helminthiasis treatmentISONfkb2 (Mus musculus)40902988 RGD 
Nfkb2Ratlymphocytic choriomeningitis disease_progressionISONfkb2 (Mus musculus)40902858 RGD 
Nfkb2RatParkinsonism  IMP 2302392 RGD 
Nfkb2Ratprion disease  ISONfkb2 (Mus musculus)40902830 RGD 
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Original Reference(s)
Nfkb2Ratcommon variable immunodeficiency  ISONFKB2 (Homo sapiens)8554872ClinVar Annotator: match by term: Common variable immunodeficiencyClinVarPMID:24140114 more ...
Nfkb2Ratcommon variable immunodeficiency 1  ISONFKB2 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency more ...ClinVarPMID:24140114 and PMID:28492532
Nfkb2Ratcommon variable immunodeficiency 10  ISONFKB2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
Nfkb2Ratgenetic disease  ISONFKB2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Nfkb2Rathereditary breast ovarian cancer syndrome  ISONFKB2 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary breast ovarian cancer syndromeClinVarPMID:25741868 and PMID:28492532
Nfkb2Ratprimary immunodeficiency disease  ISONFKB2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inherited Immunodeficiency DiseasesClinVarPMID:24140114 more ...
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Original Reference(s)
Nfkb2Ratcommon variable immunodeficiency  ISONFKB2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Nfkb2RatHeat Stroke  ISONFKB2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24039931
Nfkb2Ratprimary cutaneous T-cell non-Hodgkin lymphoma  ISONFKB2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26192916
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Nfkb2Ratcommon variable immunodeficiency  ISSNfkb2 (Mus musculus)13592920 MouseDO 
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Nfkb2Ratcommon variable immunodeficiency 10  ISONFKB2 (Homo sapiens)7240710 OMIM 

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Nfkb2Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of NFKB2 mRNA]CTDPMID:31150632
Nfkb2Rat(1->4)-beta-D-glucan multiple interactionsISONfkb2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of NFKB2 mRNACTDPMID:36331819
Nfkb2Rat(S)-nicotine multiple interactionsISONFKB2 (Homo sapiens)6480464[Aerosols co-treated with Nicotine] results in increased expression of NFKB2 mRNACTDPMID:33469865
Nfkb2Rat1,2-dimethylhydrazine multiple interactionsISONfkb2 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of NFKB2 mRNA]CTDPMID:22206623
Nfkb2Rat1,2-dimethylhydrazine increases expressionISONfkb2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of NFKB2 mRNACTDPMID:22206623
Nfkb2Rat1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile increases expressionEXP 6480464Citalopram results in increased expression of NFKB2 mRNACTDPMID:28467792
Nfkb2Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of NFKB2 mRNACTDPMID:30723492
Nfkb2Rat17alpha-ethynylestradiol affects expressionISONfkb2 (Mus musculus)6480464Ethinyl Estradiol affects the expression of NFKB2 mRNACTDPMID:17555576
Nfkb2Rat17beta-estradiol increases expressionISONFKB2 (Homo sapiens)6480464Estradiol results in increased expression of NFKB2 mRNACTDPMID:20106945 and PMID:31614463
Nfkb2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONfkb2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NFKB2 mRNACTDPMID:21570461 more ...
Nfkb2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of NFKB2 mRNACTDPMID:33387578
Nfkb2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of NFKB2 mRNACTDPMID:22298810
Nfkb2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONfkb2 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [[Lipopolysaccharides binds to and results in increased activity of TLR4 protein] which results in increased activity of NFKB2 protein] and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to NFKB2 promoter]CTDPMID:19654925 and PMID:21097750
Nfkb2Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of NFKB2 mRNACTDPMID:21346803
Nfkb2Rat3,5-diethoxycarbonyl-1,4-dihydrocollidine increases expressionISONfkb2 (Mus musculus)64804643 more ...CTDPMID:37544346
Nfkb2Rat3,5-diethoxycarbonyl-1,4-dihydrocollidine multiple interactionsISONfkb2 (Mus musculus)6480464fuzheng huayu inhibits the reaction [3 more ...CTDPMID:37544346
Nfkb2Rat4,4'-sulfonyldiphenol affects methylationISONfkb2 (Mus musculus)6480464bisphenol S affects the methylation of NFKB2 geneCTDPMID:31683443
Nfkb2Rat4-hydroxyphenyl retinamide increases expressionISONfkb2 (Mus musculus)6480464Fenretinide results in increased expression of NFKB2 mRNACTDPMID:28973697
Nfkb2Rat5-aza-2'-deoxycytidine increases expressionISONfkb2 (Mus musculus)6480464Decitabine results in increased expression of NFKB2 mRNACTDPMID:27915011
Nfkb2Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of NFKB2 mRNACTDPMID:30047161

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Biological Process
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Original Reference(s)
Nfkb2Ratcanonical NF-kappaB signal transduction involved_inISONFKB2 (Homo sapiens)1624291 PMID:37816088RGDPMID:37816088
Nfkb2Ratcanonical NF-kappaB signal transduction involved_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratextracellular matrix organization acts_upstream_of_or_withinISONfkb2 (Mus musculus)1624291MGI:2179705 PMID:10586052RGDPMID:10586052
Nfkb2Ratextracellular matrix organization acts_upstream_of_or_withinIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratfollicular dendritic cell differentiation acts_upstream_of_or_withinISONfkb2 (Mus musculus)1624291MGI:2179705 PMID:10586052RGDPMID:10586052
Nfkb2Ratfollicular dendritic cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratgerminal center formation acts_upstream_of_or_withinISONfkb2 (Mus musculus)1624291MGI:2179705 PMID:10586052RGDPMID:10586052
Nfkb2Ratgerminal center formation acts_upstream_of_or_withinIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratnon-canonical NF-kappaB signal transduction involved_inIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratnon-canonical NF-kappaB signal transduction involved_inISONfkb2 (Mus musculus)1624291 PMID:23583643RGDPMID:23583643
Nfkb2Ratpositive regulation of transcription by RNA polymerase II involved_inISONFKB2 (Homo sapiens)1624291 PMID:12835724RGDPMID:12835724
Nfkb2Ratpositive regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratregulation of DNA-templated transcription involved_inISONFKB2 (Homo sapiens)1624291 PMID:8360178RGDPMID:8360178
Nfkb2Ratregulation of DNA-templated transcription involved_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratregulation of DNA-templated transcription involved_inIEAInterPro:IPR000451 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Nfkb2Ratregulation of gene expression involved_inIEAARBA:ARBA000283341600115GO_REF:0000117UniProtGO_REF:0000117
Nfkb2Ratresponse to cytokine  IEP 2293782 RGD 
Nfkb2Ratresponse to lipopolysaccharide  IEP 2293782 RGD 
Nfkb2Ratsignal transduction involved_inIEAInterPro:IPR0004881600115GO_REF:0000002InterProGO_REF:0000002
Nfkb2Ratspleen development acts_upstream_of_or_withinIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Nfkb2RatBcl3/NF-kappaB2 complex part_ofISONFKB2 (Homo sapiens)1624291 PMID:9407099RGDPMID:9407099
Nfkb2RatBcl3/NF-kappaB2 complex part_ofIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratcytoplasm located_inISONFKB2 (Homo sapiens)1624291 PMID:15677444RGDPMID:15677444
Nfkb2Ratcytoplasm located_inIEAInterPro:IPR0004511600115GO_REF:0000002InterProGO_REF:0000002
Nfkb2Ratcytoplasm located_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratcytosol located_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratcytosol located_inISONFKB2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nfkb2Ratnucleoplasm located_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratnucleoplasm located_inISONFKB2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nfkb2Ratnucleus located_inISONFKB2 (Homo sapiens)1624291 PMID:15677444RGDPMID:15677444
Nfkb2Ratnucleus located_inISONfkb2 (Mus musculus)1624291 PMID:10402669RGDPMID:10402669
Nfkb2Ratnucleus located_inIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratnucleus located_inIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Nfkb2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
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Molecular Function
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Nfkb2RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
Nfkb2RatDNA binding enablesIEAInterPro:IPR011539 and InterPro:IPR0370591600115GO_REF:0000002InterProGO_REF:0000002
Nfkb2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISONFKB2 (Homo sapiens)1624291 PMID:12835724RGDPMID:12835724
Nfkb2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2RatDNA-binding transcription factor activity enablesISONfkb2 (Mus musculus)1624291 PMID:22880094RGDPMID:22880094
Nfkb2RatDNA-binding transcription factor activity enablesIEAUniProtKB:Q9WTK5 and ensembl:ENSMUSP000001075121600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2RatDNA-binding transcription factor activity enablesIEAInterPro:IPR000451 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Nfkb2Ratprotein binding  IPIRela (Rattus norvegicus)2302392 RGD 
Nfkb2Ratprotein binding enablesISONfkb2 (Mus musculus)1624291UniProtKB:Q04207 more ...RGDPMID:17254973 more ...
Nfkb2Ratprotein binding enablesISONFKB2 (Homo sapiens) and UniProtKB:Q00653-PRO_00000303221624291UniProtKB:O00255-2 and PMID:11526476RGDPMID:11526476
Nfkb2Ratprotein binding enablesISONFKB2 (Homo sapiens) and UniProtKB:Q00653-21624291UniProtKB:P60900 and PMID:14743216RGDPMID:14743216
Nfkb2Ratprotein binding enablesISONFKB2 (Homo sapiens)1624291UniProtKB:O00255 more ...RGDPMID:11239468 more ...
Nfkb2RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISONFKB2 (Homo sapiens)1624291 PMID:12835724RGDPMID:12835724
Nfkb2RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
Nfkb2Ratsequence-specific double-stranded DNA binding enablesISONFKB2 (Homo sapiens)1624291 PMID:28473536RGDPMID:28473536
Nfkb2Ratsequence-specific double-stranded DNA binding enablesIEAUniProtKB:Q00653 and ensembl:ENSP000004992941600115GO_REF:0000107EnsemblGO_REF:0000107
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RGD Manual Annotations


  
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Original Reference(s)
Nfkb2Ratnuclear factor kappa B signaling pathway   ISONFKB2 (Homo sapiens)2292172 RGD 

Imported Annotations - SMPDB

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Nfkb2Ratadenosine signaling pathway  ISONFKB2 (Homo sapiens)10402751 SMPDBSMP:00320
Nfkb2Ratadenosine signaling pathway  ISONFKB2 (Homo sapiens)10402751 SMPDBSMP:00321

Imported Annotations - KEGG (archival)

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Nfkb2Ratmitogen activated protein kinase signaling pathway   IEA 6907045 KEGGrno:04010

Imported Annotations - PID (archival)

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Nfkb2Ratinterleukin-12 signaling pathway  ISONFKB2 (Homo sapiens)6484113 PIDPID:200045
Nfkb2Ratnuclear factor kappa B signaling pathway   ISONFKB2 (Homo sapiens)6484113 PIDPID:200048

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Reference Title
Reference Citation
1. Differential requirement for NF-kappa B family members in control of helminth infection and intestinal inflammation. Artis D, etal., J Immunol. 2002 Oct 15;169(8):4481-7. doi: 10.4049/jimmunol.169.8.4481.
2. Alteration of NF-kappaB activity leads to mitochondrial apoptosis after infection with pathological prion protein. Bourteele S, etal., Cell Microbiol. 2007 Sep;9(9):2202-17. doi: 10.1111/j.1462-5822.2007.00950.x. Epub 2007 Jun 15.
3. Signaling mediated by the NF-κB sub-units NF-κB1, NF-κB2 and c-Rel differentially regulate Helicobacter felis-induced gastric carcinogenesis in C57BL/6 mice. Burkitt MD, etal., Oncogene. 2013 Dec 12;32(50):5563-73. doi: 10.1038/onc.2013.334. Epub 2013 Aug 26.
4. The involvement of NF-kappaB p65/p52 in the effects of GDNF on DA neurons in early PD rats. Cao JP, etal., Brain Res Bull. 2008 Jul 30;76(5):505-11. Epub 2008 Apr 9.
5. The alternative NF-kappaB signalling pathway is a prerequisite for an appropriate immune response against lymphocytic choriomeningitis virus infection. Droebner K, etal., Viral Immunol. 2010 Jun;23(3):295-308. doi: 10.1089/vim.2009.0101.
6. Diabetes-induced atrophy is associated with a muscle-specific alteration in NF-kappaB activation and expression. Frier BC, etal., Cell Stress Chaperones. 2008 Jul 17.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
9. Shared principles in NF-kappaB signaling. Hayden MS and Ghosh S, Cell. 2008 Feb 8;132(3):344-62.
10. The regulation of inducible nitric oxide synthase gene expression induced by lipopolysaccharide and tumor necrosis factor-alpha in C6 cells: involvement of AP-1 and NFkappaB. Lee JK, etal., Life Sci. 2003 Jun 20;73(5):595-609.
11. Age-dependent modulation of NF-kappaB expression in rat adrenal gland. Medicherla R, etal., Mech Ageing Dev. 2002 May;123(9):1211-27.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
17. GOA pipeline RGD automated data pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Distinct patterns of intracerebral hemorrhage-induced alterations in NF-kappaB subunit, iNOS, and COX-2 expression. Zhao X, etal., J Neurochem. 2007 May;101(3):652-63. Epub 2007 Jan 23.
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PMID:8360178   PMID:9407099   PMID:10402669   PMID:10586052   PMID:12477932   PMID:12835724   PMID:15677444   PMID:18703048   PMID:23564451   PMID:23583643   PMID:26824492  



Nfkb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,106,010 - 255,114,649 (+)NCBIGRCr8
mRatBN7.21245,164,586 - 245,173,225 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,165,950 - 245,173,213 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,288,361 - 253,294,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01259,983,048 - 259,989,300 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,634,805 - 252,641,057 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,050,634 - 266,059,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,053,002 - 266,059,256 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,481,574 - 273,490,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,521,559 - 251,527,815 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,784,632 - 251,790,888 (+)NCBI
Celera1240,949,824 - 240,956,078 (+)NCBICelera
Cytogenetic Map1q54NCBI
NFKB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,394,110 - 102,402,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,394,110 - 102,402,524 (+)EnsemblGRCh38hg38GRCh38
GRCh3710104,153,867 - 104,162,286 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,144,219 - 104,152,271 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410104,145,452 - 104,152,257NCBI
Celera1097,895,118 - 97,903,169 (+)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,787,077 - 97,795,460 (+)NCBIHuRef
CHM1_110104,437,286 - 104,445,707 (+)NCBICHM1_1
T2T-CHM13v2.010103,279,058 - 103,287,478 (+)NCBIT2T-CHM13v2.0
Nfkb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,285,478 - 46,300,839 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,292,759 - 46,300,824 (+)EnsemblGRCm39 Ensembl
GRCm381946,300,994 - 46,312,400 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,304,320 - 46,312,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371946,379,227 - 46,386,580 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,358,929 - 46,365,401 (+)NCBIMGSCv36mm8
Celera1947,067,972 - 47,075,305 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.8NCBI
Nfkb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,994,874 - 8,000,444 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,994,730 - 8,001,776 (-)NCBIChiLan1.0ChiLan1.0
NFKB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,278,824 - 114,290,026 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,284,119 - 114,295,805 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01098,997,604 - 99,006,407 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,463,503 - 102,471,907 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,463,503 - 102,471,907 (+)Ensemblpanpan1.1panPan2
NFKB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,902,212 - 14,910,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,902,706 - 14,910,395 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,075,041 - 15,082,885 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,376,710 - 15,384,554 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,376,790 - 15,384,554 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,921,754 - 14,929,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,960,852 - 14,968,695 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,093,467 - 15,101,311 (+)NCBIUU_Cfam_GSD_1.0
Nfkb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,861,791 - 31,868,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,465,162 - 3,471,205 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,465,016 - 3,471,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFKB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,406,004 - 113,414,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,406,412 - 113,414,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,260,742 - 123,270,847 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NFKB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,426,193 - 95,434,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,427,785 - 95,434,570 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,531,952 - 56,540,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfkb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,803,917 - 1,810,187 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,804,050 - 1,810,309 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Nfkb2
21 total Variants

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:68
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000026235
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat

1 to 10 of 54 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000026235   ⟹   ENSRNOP00000026235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,165,950 - 245,173,213 (+)Ensembl
Rnor_6.0 Ensembl1266,053,002 - 266,059,256 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103016   ⟹   ENSRNOP00000080319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,165,950 - 245,173,213 (+)Ensembl
RefSeq Acc Id: NM_001008349   ⟹   NP_001008350
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,108,374 - 255,114,628 (+)NCBI
mRatBN7.21245,166,950 - 245,173,204 (+)NCBI
Rnor_6.01266,053,002 - 266,059,256 (+)NCBI
Rnor_5.01273,481,574 - 273,490,218 (+)NCBI
RGSC_v3.41251,521,559 - 251,527,815 (+)RGD
Celera1240,949,824 - 240,956,078 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231503   ⟹   XP_006231565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81255,106,010 - 255,114,649 (+)NCBI
mRatBN7.21245,164,586 - 245,173,225 (+)NCBI
Rnor_6.01266,050,634 - 266,059,277 (+)NCBI
Rnor_5.01273,481,574 - 273,490,218 (+)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_001008350 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231565 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85800 (Get FASTA)   NCBI Sequence Viewer  
  EDL94341 (Get FASTA)   NCBI Sequence Viewer  
  EDL94342 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026235
  ENSRNOP00000026235.2
  ENSRNOP00000080319
  ENSRNOP00000080319.1
1 to 9 of 9 rows
RefSeq Acc Id: NP_001008350   ⟸   NM_001008349
- UniProtKB: Q5U2Z4 (UniProtKB/TrEMBL),   A6JHL8 (UniProtKB/TrEMBL),   A0A8I6G6F3 (UniProtKB/TrEMBL),   A6JHL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231565   ⟸   XM_006231503
- Peptide Label: isoform X1
- UniProtKB: Q5U2Z4 (UniProtKB/TrEMBL),   A6JHL8 (UniProtKB/TrEMBL),   A0A8I6G6F3 (UniProtKB/TrEMBL),   A6JHL7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026235   ⟸   ENSRNOT00000026235
Ensembl Acc Id: ENSRNOP00000080319   ⟸   ENSRNOT00000103016
RHD

Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2Z4-F1-model_v2 AlphaFold Q5U2Z4 1-898 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690960
Promoter ID:EPDNEW_R1485
Type:initiation region
Name:Nfkb2_1
Description:nuclear factor kappa B subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01266,053,002 - 266,053,062EPDNEW


1 to 40 of 55 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-55518 BioCyc
Ensembl Genes ENSRNOG00000019311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026235 ENTREZGENE
  ENSRNOT00000026235.4 UniProtKB/TrEMBL
  ENSRNOT00000103016 ENTREZGENE
  ENSRNOT00000103016.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  2.60.40.340 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110486 IMAGE-MGC_LOAD
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Death UniProtKB/TrEMBL
  DEATH-like UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_NFkappaB UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  NF_Rel_dor UniProtKB/TrEMBL
  NFkB_p100 UniProtKB/TrEMBL
  p53-like_TF_DNA-bd UniProtKB/TrEMBL
  RHD UniProtKB/TrEMBL
  RHD_CS UniProtKB/TrEMBL
  RHD_dimer UniProtKB/TrEMBL
  RHD_DNA_bind_dom_sf UniProtKB/TrEMBL
KEGG Report rno:309452 UniProtKB/TrEMBL
MGC_CLONE MGC:93816 IMAGE-MGC_LOAD
NCBI Gene 309452 ENTREZGENE
PANTHER PTHR24169 UniProtKB/TrEMBL
  PTHR24169:SF21 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Death UniProtKB/TrEMBL
  RHD UniProtKB/TrEMBL
  RHD_dimer UniProtKB/TrEMBL
PhenoGen Nfkb2 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
  NFKBTNSCPFCT UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
1 to 40 of 55 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Nfkb2  nuclear factor kappa B subunit 2  Nfkb2  nuclear factor of kappa light polypeptide gene enhancer in B-cells 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-01 Nfkb2  nuclear factor of kappa light polypeptide gene enhancer in B-cells 2  Nfkb2  nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Nfkb2  nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100  RGD1307189  similar to nuclear factor kappa B subunit p100  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1307189  similar to nuclear factor kappa B subunit p100  RGD1307189_predicted  similar to nuclear factor kappa B subunit p100 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307189_predicted  similar to nuclear factor kappa B subunit p100 (predicted)  LOC309452_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC309452_predicted  similar to nuclear factor kappa B subunit p100 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL