NFKB2 (nuclear factor kappa B subunit 2) - Rat Genome Database

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Gene: NFKB2 (nuclear factor kappa B subunit 2) Canis lupus familiaris
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Symbol: NFKB2
Name: nuclear factor kappa B subunit 2
RGD ID: 12174258
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN extracellular matrix organization (ortholog); follicular dendritic cell differentiation (ortholog); germinal center formation (ortholog); PARTICIPATES IN adenosine signaling pathway; interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH atrophic gastritis (ortholog); Cerebral Hemorrhage (ortholog); common variable immunodeficiency (ortholog); FOUND IN Bcl3/NF-kappaB2 complex (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear factor NF-kappa-B p100 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,902,212 - 14,910,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,902,706 - 14,910,395 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,075,041 - 15,082,885 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,376,710 - 15,384,554 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,376,790 - 15,384,554 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,921,754 - 14,929,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,960,852 - 14,968,695 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,093,467 - 15,101,311 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NFKB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,902,212 - 14,910,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,902,706 - 14,910,395 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,075,041 - 15,082,885 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,376,710 - 15,384,554 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,376,790 - 15,384,554 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,921,754 - 14,929,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,960,852 - 14,968,695 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,093,467 - 15,101,311 (+)NCBIUU_Cfam_GSD_1.0
NFKB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,394,110 - 102,402,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,394,110 - 102,402,524 (+)EnsemblGRCh38hg38GRCh38
GRCh3710104,153,867 - 104,162,286 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,144,219 - 104,152,271 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410104,145,452 - 104,152,257NCBI
Celera1097,895,118 - 97,903,169 (+)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,787,077 - 97,795,460 (+)NCBIHuRef
CHM1_110104,437,286 - 104,445,707 (+)NCBICHM1_1
T2T-CHM13v2.010103,279,058 - 103,287,478 (+)NCBIT2T-CHM13v2.0
Nfkb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,285,478 - 46,300,839 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,292,759 - 46,300,824 (+)EnsemblGRCm39 Ensembl
GRCm381946,300,994 - 46,312,400 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,304,320 - 46,312,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371946,379,227 - 46,386,580 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,358,929 - 46,365,401 (+)NCBIMGSCv36mm8
Celera1947,067,972 - 47,075,305 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.8NCBI
Nfkb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,106,010 - 255,114,649 (+)NCBIGRCr8
mRatBN7.21245,164,586 - 245,173,225 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,165,950 - 245,173,213 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,288,361 - 253,294,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01259,983,048 - 259,989,300 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,634,805 - 252,641,057 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,050,634 - 266,059,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,053,002 - 266,059,256 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,481,574 - 273,490,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,521,559 - 251,527,815 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,784,632 - 251,790,888 (+)NCBI
Celera1240,949,824 - 240,956,078 (+)NCBICelera
Cytogenetic Map1q54NCBI
Nfkb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,994,874 - 8,000,444 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,994,730 - 8,001,776 (-)NCBIChiLan1.0ChiLan1.0
NFKB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,278,824 - 114,290,026 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,284,119 - 114,295,805 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01098,997,604 - 99,006,407 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,463,503 - 102,471,907 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,463,503 - 102,471,907 (+)Ensemblpanpan1.1panPan2
Nfkb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,861,791 - 31,868,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,465,162 - 3,471,205 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,465,016 - 3,471,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFKB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,406,004 - 113,414,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,406,412 - 113,414,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,260,742 - 123,270,847 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NFKB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,426,193 - 95,434,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,427,785 - 95,434,570 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,531,952 - 56,540,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfkb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,803,917 - 1,810,187 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,804,050 - 1,810,309 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NFKB2
53 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 10 6 6 10 4
Low 1 5 12 6 6 6 12 8 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005637669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005637671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000016131   ⟹   ENSCAFP00000014918
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2814,902,706 - 14,910,395 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845041727   ⟹   ENSCAFP00845032725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2815,376,790 - 15,384,554 (+)Ensembl
RefSeq Acc Id: XM_005637669   ⟹   XP_005637726
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12814,902,212 - 14,910,437 (+)NCBI
Dog10K_Boxer_Tasha2815,075,041 - 15,082,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005637671   ⟹   XP_005637728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12814,902,214 - 14,910,437 (+)NCBI
Dog10K_Boxer_Tasha2815,075,041 - 15,082,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038440405   ⟹   XP_038296333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02815,376,710 - 15,384,554 (+)NCBI
RefSeq Acc Id: XM_038440406   ⟹   XP_038296334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02815,376,710 - 15,384,554 (+)NCBI
RefSeq Acc Id: XM_038515028   ⟹   XP_038370956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12814,921,754 - 14,929,597 (+)NCBI
RefSeq Acc Id: XM_038515029   ⟹   XP_038370957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12814,921,754 - 14,929,597 (+)NCBI
RefSeq Acc Id: XM_038578632   ⟹   XP_038434560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02815,093,467 - 15,101,311 (+)NCBI
RefSeq Acc Id: XM_038578633   ⟹   XP_038434561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02815,093,467 - 15,101,311 (+)NCBI
RefSeq Acc Id: XM_038642816   ⟹   XP_038498744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02814,960,852 - 14,968,695 (+)NCBI
RefSeq Acc Id: XM_038642817   ⟹   XP_038498745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02814,960,852 - 14,968,695 (+)NCBI
RefSeq Acc Id: XP_005637726   ⟸   XM_005637669
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PEQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005637728   ⟸   XM_005637671
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PK60 (UniProtKB/TrEMBL),   A0A8P0SF42 (UniProtKB/TrEMBL),   A0A8C0PEQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000014918   ⟸   ENSCAFT00000016131
RefSeq Acc Id: XP_038370956   ⟸   XM_038515028
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038370957   ⟸   XM_038515029
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038498744   ⟸   XM_038642816
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038498745   ⟸   XM_038642817
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038296333   ⟸   XM_038440405
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PEQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296334   ⟸   XM_038440406
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PK60 (UniProtKB/TrEMBL),   A0A8P0SF42 (UniProtKB/TrEMBL),   A0A8C0PEQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434560   ⟸   XM_038578632
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PEQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434561   ⟸   XM_038578633
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PEQ7 (UniProtKB/TrEMBL),   A0A8I3PK60 (UniProtKB/TrEMBL),   A0A8P0SF42 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845032725   ⟸   ENSCAFT00845041727
Protein Domains
RHD

Promoters
RGD ID:13688312
Promoter ID:EPDNEW_C6380
Type:initiation region
Name:NFKB2_1
Description:nuclear factor kappa B subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12814,902,679 - 14,902,739EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010155 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030024842 UniProtKB/TrEMBL
  ENSCAFG00040023175 UniProtKB/TrEMBL
  ENSCAFG00845023626 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016131.5 UniProtKB/TrEMBL
  ENSCAFT00030045773.1 UniProtKB/TrEMBL
  ENSCAFT00040043075.1 UniProtKB/TrEMBL
  ENSCAFT00845041727 ENTREZGENE
  ENSCAFT00845041727.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  2.60.40.340 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_dom UniProtKB/TrEMBL
  IPT_NFkappaB UniProtKB/TrEMBL
  NFkB/Dor UniProtKB/TrEMBL
  NFkB_p100 UniProtKB/TrEMBL
  p53-like_TF_DNA-bd UniProtKB/TrEMBL
  RHD_CS UniProtKB/TrEMBL
  RHD_dimer UniProtKB/TrEMBL
  RHD_DNA_bind_dom UniProtKB/TrEMBL
  RHD_DNA_bind_dom_sf UniProtKB/TrEMBL
NCBI Gene NFKB2 ENTREZGENE
PANTHER PTHR24169 UniProtKB/TrEMBL
  PTHR24169:SF21 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Death UniProtKB/TrEMBL
  RHD_dimer UniProtKB/TrEMBL
  RHD_DNA_bind UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
  NFKBTNSCPFCT UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  REL_1 UniProtKB/TrEMBL
  REL_2 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  DEATH UniProtKB/TrEMBL
  IPT UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF49417 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A8C0PEQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PK60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SF42 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43781 ENTREZGENE