Gene: Pkd2l1 (polycystin 2 like 1, transient receptor potential cation channel) Rattus norvegicus
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Symbol: Pkd2l1
Name: polycystin 2 like 1, transient receptor potential cation channel
Description: ENCODES a protein that exhibits alpha-actinin binding (ortholog); calcium activated cation channel activity (ortholog); calcium channel activity (ortholog); INVOLVED IN cation transport (ortholog); cellular response to acidic pH (ortholog); cellular response to pH (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN calcium channel complex (ortholog); cation channel complex (ortholog); cell surface (ortholog); INTERACTS WITH acrylamide; bisphenol A; copper atom
AGR Description: Predicted to contribute to cation transmembrane transporter activity and sour taste receptor activity; predicted to be involved in several processes, including cation transport, cellular response to acidic pH, and detection of chemical stimulus involved in sensory perception of sour taste; predicted to colocalize with the cell surface; orthologous to human PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel).
Merged Description: Predicted to contribute to cation transmembrane transporter activity and sour taste receptor activity; predicted to be involved in several processes, including cation transport, cellular response to acidic pH, and detection of chemical stimulus involved in sensory perception of sour taste; predicted to colocalize with the cell surface; orthologous to human PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel); INTERACTS WITH acrylamide; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC293937; polycystic kidney disease 2-like 1
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01263,922,201 - 263,959,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01271,367,373 - 271,404,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,047,374 - 249,084,997 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11249,083,071 - 249,342,077 (+)NCBI
Celera1238,850,066 - 238,887,164 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Pkd2l1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306261
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.