LCOR (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 8 | 108,746,901 - 108,898,139 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 10 | 108,752,221 - 108,903,795 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 10 | 93,454,741 - 93,609,317 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 10 | 96,953,511 - 97,106,845 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 10 | 97,067,801 - 97,106,845 (+) | Ensembl | panpan1.1 | | panPan2 | |
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LCOR (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 10 | 96,832,298 - 96,995,956 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 10 | 96,832,254 - 96,995,956 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 10 | 98,592,055 - 98,755,713 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 10 | 98,582,727 - 98,708,655 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 10 | 92,333,590 - 92,465,797 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q24.1 | NCBI | | | | | HuRef | 10 | 92,221,267 - 92,352,266 (+) | NCBI | | HuRef | | | CHM1_1 | 10 | 98,873,752 - 99,006,489 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 10 | 97,713,211 - 97,876,841 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Lcor (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 19 | 41,471,121 - 41,584,600 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 19 | 41,471,076 - 41,574,975 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 19 | 41,482,682 - 41,596,161 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 19 | 41,482,637 - 41,586,536 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 19 | 41,624,129 - 41,634,271 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 19 | 41,602,950 - 41,613,092 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 19 | 42,347,665 - 42,357,805 (+) | NCBI | | Celera | | | Cytogenetic Map | 19 | C3 | NCBI | | | | | cM Map | 19 | 34.97 | NCBI | | | | |
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Lcor (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 250,247,965 - 250,354,985 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 240,298,565 - 240,405,627 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 240,298,563 - 240,402,448 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 248,441,750 - 248,548,793 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 255,138,875 - 255,245,940 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 247,791,893 - 247,898,959 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 260,775,091 - 260,839,549 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 | 1 | 260,789,955 - 260,809,051 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 260,732,485 - 260,830,854 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 268,187,859 - 268,287,882 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 246,702,984 - 246,800,587 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 246,818,012 - 246,915,428 (+) | NCBI | | | | | Celera | 1 | 236,138,607 - 236,245,268 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q54 | NCBI | | | | |
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LCOR (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 28 | 10,192,587 - 10,337,556 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 28 | 10,193,748 - 10,335,626 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 28 | 10,377,753 - 10,529,390 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 28 | 10,514,666 - 10,667,693 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 28 | 10,462,893 - 10,659,912 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 28 | 10,176,823 - 10,329,346 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 28 | 10,237,535 - 10,389,797 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 28 | 10,377,331 - 10,530,360 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lcor (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024407213 | 36,551,541 - 36,681,047 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936636 | 2,595,394 - 2,626,824 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936636 | 2,594,777 - 2,720,153 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LOC100627422 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 14 | 108,304,048 - 108,436,982 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 108,304,010 - 108,443,576 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 117,940,134 - 118,079,352 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LCOR (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 9 | 90,009,449 - 90,157,340 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 9 | 90,152,909 - 90,156,646 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666048 | 50,898,268 - 51,059,239 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Lcor (Heterocephalus glaber - naked mole-rat) |
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