Pcnx3 (pecanex 3) - Rat Genome Database

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Gene: Pcnx3 (pecanex 3) Rattus norvegicus
Analyze
Symbol: Pcnx3
Name: pecanex 3
RGD ID: 1305529
Description: Predicted to be located in membrane. Orthologous to human PCNX3 (pecanex 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC309167; Pcnxl3; pecanex homolog 3; pecanex homolog 3 (Drosophila); pecanex-like 3; pecanex-like 3 (Drosophila); pecanex-like protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,380,657 - 212,402,967 (-)NCBIGRCr8
mRatBN7.21202,951,322 - 202,974,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,951,322 - 202,976,561 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01221,019,091 - 221,041,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,019,500 - 221,041,401 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,954,413 - 227,977,249 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,288,653 - 208,311,240 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,442,387 - 208,464,693 (-)NCBI
Celera1200,487,075 - 200,509,942 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcnx3RatAicardi-Goutieres Syndrome 3  ISOPCNX3 (Homo sapiens)8554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 3ClinVarPMID:28492532 and PMID:28600438
Pcnx3RatBardet-Biedl syndrome  ISOPCNX3 (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:12118255 more ...
Pcnx3Ratglycogen storage disease V  ISOPCNX3 (Homo sapiens)8554872ClinVar Annotator: match by term: Glycogen storage disease and type VClinVarPMID:12118255 more ...
Pcnx3Ratimmunodeficiency 90  ISOPCNX3 (Homo sapiens)8554872ClinVar Annotator: match by term: Infections more ...ClinVarPMID:28492532
Pcnx3Ratintellectual disability  ISOPCNX3 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcnx3Ratsystemic lupus erythematosus  ISOPCNX3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26808113

1 to 20 of 50 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcnx3Rat1,2-dimethylhydrazine multiple interactionsISOPcnx3 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of PCNX3 mRNACTDPMID:22206623
Pcnx3Rat17alpha-ethynylestradiol multiple interactionsISOPcnx3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PCNX3 mRNACTDPMID:17942748
Pcnx3Rat17beta-estradiol increases expressionISOPcnx3 (Mus musculus)6480464Estradiol results in increased expression of PCNX3 mRNACTDPMID:39298647
Pcnx3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPcnx3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PCNX3 mRNACTDPMID:21570461
Pcnx3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PCNX3 mRNACTDPMID:33387578
Pcnx3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPcnx3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of PCNX3 mRNA and [Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in increased methylation of PCNX3 geneCTDPMID:17942748 and PMID:21212295
Pcnx3Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of PCNX3 mRNACTDPMID:21346803
Pcnx3Rat4,4'-sulfonyldiphenol decreases expressionISOPcnx3 (Mus musculus)6480464bisphenol S results in decreased expression of PCNX3 mRNACTDPMID:39298647
Pcnx3Ratacrylamide decreases expressionISOPCNX3 (Homo sapiens)6480464Acrylamide results in decreased expression of PCNX3 mRNACTDPMID:32763439
Pcnx3Rataflatoxin B1 increases methylationISOPCNX3 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of PCNX3 intronCTDPMID:30157460
Pcnx3RatAflatoxin B2 alpha increases methylationISOPCNX3 (Homo sapiens)6480464aflatoxin B2 results in increased methylation of PCNX3 intronCTDPMID:30157460
Pcnx3Ratarsane multiple interactionsISOPCNX3 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of PCNX3 mRNACTDPMID:39836092
Pcnx3Ratarsenic atom multiple interactionsISOPCNX3 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of PCNX3 mRNACTDPMID:39836092
Pcnx3Ratbenzo[a]pyrene multiple interactionsISOPcnx3 (Mus musculus)6480464Benzo(a)pyrene promotes the reaction [AHR protein binds to PCNX3 promoter]CTDPMID:19654925
Pcnx3Ratbenzo[a]pyrene affects methylationISOPCNX3 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of PCNX3 intronCTDPMID:30157460
Pcnx3Ratbis(2-ethylhexyl) phthalate increases expressionISOPcnx3 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of PCNX3 mRNACTDPMID:34319233
Pcnx3Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of PCNX3 mRNACTDPMID:25181051
Pcnx3Ratbisphenol A increases expressionISOPcnx3 (Mus musculus)6480464bisphenol A results in increased expression of PCNX3 mRNACTDPMID:33221593
Pcnx3Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of PCNX3 mRNACTDPMID:30816183
Pcnx3Ratcaffeine decreases phosphorylationISOPCNX3 (Homo sapiens)6480464Caffeine results in decreased phosphorylation of PCNX3 proteinCTDPMID:35688186

1 to 20 of 50 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcnx3Ratmembrane located_inIEAUniRule:UR0014197531600115GO_REF:0000104UniProtGO_REF:0000104
Pcnx3Ratmembrane located_inIEAInterPro:IPR0077351600115GO_REF:0000002InterProGO_REF:0000002
Pcnx3Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Pcnx3Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcnx3Ratprotein binding enablesISOPCNX3 (Homo sapiens)1624291UniProtKB:Q15884 more ...RGDPMID:33961781 and PMID:34927784


#
Reference Title
Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:30361391  



Pcnx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,380,657 - 212,402,967 (-)NCBIGRCr8
mRatBN7.21202,951,322 - 202,974,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,951,322 - 202,976,561 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01221,019,091 - 221,041,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,019,500 - 221,041,401 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,954,413 - 227,977,249 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,288,653 - 208,311,240 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,442,387 - 208,464,693 (-)NCBI
Celera1200,487,075 - 200,509,942 (-)NCBICelera
Cytogenetic Map1q43NCBI
PCNX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,615,776 - 65,637,439 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,615,776 - 65,637,439 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,383,247 - 65,404,910 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,140,359 - 65,161,486 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,710,511 - 62,731,638 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,710,765 - 61,731,893 (+)NCBIHuRef
CHM1_11165,267,722 - 65,288,849 (+)NCBICHM1_1
T2T-CHM13v2.01165,608,472 - 65,631,609 (+)NCBIT2T-CHM13v2.0
Pcnx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,714,663 - 5,739,036 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,714,663 - 5,738,936 (-)EnsemblGRCm39 Ensembl
GRCm38195,664,635 - 5,689,003 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,664,635 - 5,688,908 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,664,635 - 5,688,908 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,664,640 - 5,688,149 (-)NCBIMGSCv36mm8
Celera195,534,226 - 5,558,947 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Pcnx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,628,696 - 19,649,634 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,628,243 - 19,650,163 (-)NCBIChiLan1.0ChiLan1.0
PCNX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,845,904 - 66,867,231 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,888,852 - 67,910,575 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,974,933 - 60,996,632 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,308,799 - 64,331,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,310,292 - 64,330,943 (+)Ensemblpanpan1.1panPan2
PCNX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,572,004 - 51,592,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,571,452 - 51,592,104 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,180,518 - 50,200,666 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,609,302 - 52,629,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,609,317 - 52,629,386 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,709,149 - 51,729,326 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,283,267 - 51,303,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,073,621 - 52,093,759 (-)NCBIUU_Cfam_GSD_1.0
Pcnx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,383,027 - 7,404,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,825,376 - 3,847,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,825,376 - 3,847,592 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCNX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,619,215 - 6,639,953 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,619,213 - 6,639,933 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,771,517 - 5,792,456 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCNX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,601,944 - 8,625,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,601,805 - 8,624,394 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,897,685 - 105,919,699 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcnx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,758,355 - 20,779,441 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,758,355 - 20,780,166 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Pcnx3
42 total Variants


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 202972079 202972080 G A snv European Variation Archive Release 3, European Variation Archive Release 4, European Variation Archive Release 6, BDIX/NemOdaMcwi (2022), ACI/N (2020), ACI/EurMcwi (2019NG), ACI/EurMcwi (2019) View more Information


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 227954902 227954903 C T snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), Crl:SD (UDEL) View more Information
1 227975167 227975168 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/N (KNAW), ACI/EurMcwi (KNAW), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU) View more Information


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 221039845 221039846 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/N (2020), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:616
Count of miRNA genes:191
Interacting mature miRNAs:221
Transcripts:ENSRNOT00000028170, ENSRNOT00000064136
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat

1 to 10 of 84 rows
RH141707  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,798,831 - 130,799,039 (-)MAPPERmRatBN7.2
mRatBN7.26130,798,831 - 130,799,039 (+)MAPPERmRatBN7.2
mRatBN7.21202,951,581 - 202,951,785 (+)MAPPERmRatBN7.2
Rnor_6.01221,019,351 - 221,019,554NCBIRnor6.0
Rnor_6.06136,306,071 - 136,306,278NCBIRnor6.0
Rnor_5.01227,954,673 - 227,954,876UniSTSRnor5.0
RGSC_v3.41208,289,190 - 208,289,393UniSTSRGSC3.4
RGSC_v3.46136,521,867 - 136,522,074UniSTSRGSC3.4
Celera6128,353,979 - 128,354,186UniSTS
Celera1200,487,335 - 200,487,538UniSTS
Cytogenetic Map1q43UniSTS
PMC87148P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,975,828 - 202,975,992 (+)MAPPERmRatBN7.2
Rnor_6.01221,043,595 - 221,043,758NCBIRnor6.0
Rnor_5.01227,978,917 - 227,979,080UniSTSRnor5.0
RGSC_v3.41208,313,431 - 208,313,594UniSTSRGSC3.4
Celera1200,511,578 - 200,511,741UniSTS
Cytogenetic Map1q43UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 22 of 22 rows
RefSeq Transcripts NM_001432284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001074181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_219515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENSRNOT00000064136   ⟹   ENSRNOP00000059738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,951,322 - 202,976,561 (-)Ensembl
Rnor_6.0 Ensembl1221,019,500 - 221,041,401 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097729   ⟹   ENSRNOP00000095745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,951,322 - 202,976,561 (-)Ensembl
RefSeq Acc Id: XM_006230947   ⟹   XP_006231009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
Rnor_6.01221,019,091 - 221,041,959 (-)NCBI
Rnor_5.01227,954,413 - 227,977,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230948   ⟹   XP_006231010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
Rnor_6.01221,019,091 - 221,041,959 (-)NCBI
Rnor_5.01227,954,413 - 227,977,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230950   ⟹   XP_006231012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
Rnor_6.01221,019,091 - 221,041,959 (-)NCBI
Rnor_5.01227,954,413 - 227,977,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230952   ⟹   XP_006231014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
Rnor_6.01221,019,091 - 221,041,958 (-)NCBI
Rnor_5.01227,954,413 - 227,977,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094887   ⟹   XP_038950815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
RefSeq Acc Id: XM_039094892   ⟹   XP_038950820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
RefSeq Acc Id: XM_063279860   ⟹   XP_063135930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
RefSeq Acc Id: XM_063279866   ⟹   XP_063135936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
RefSeq Acc Id: XM_219515   ⟹   XP_219515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,380,657 - 212,402,967 (-)NCBI
mRatBN7.21202,951,322 - 202,974,167 (-)NCBI
Rnor_6.01221,019,091 - 221,041,958 (-)NCBI
Rnor_5.01227,954,413 - 227,977,249 (-)NCBI
RGSC_v3.41208,288,653 - 208,311,240 (-)RGD
Sequence:
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: XP_219515   ⟸   XM_219515
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006231010   ⟸   XM_006230948
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AU25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231014   ⟸   XM_006230952
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AU25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231012   ⟸   XM_006230950
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AU25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231009   ⟸   XM_006230947
- Peptide Label: isoform X1
- UniProtKB: D3ZSQ1 (UniProtKB/TrEMBL),   A0A8I6AU25 (UniProtKB/TrEMBL)
- Sequence:
Pecanex C-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSQ1-F1-model_v2 AlphaFold D3ZSQ1 1-2028 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 21 of 21 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56663 BioCyc
Ensembl Genes ENSRNOG00000020742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064136 ENTREZGENE
  ENSRNOT00000064136.4 UniProtKB/TrEMBL
  ENSRNOT00000097729 ENTREZGENE
  ENSRNOT00000097729.1 UniProtKB/TrEMBL
  ENSRNOT00000136741 ENTREZGENE
  ENSRNOT00000168853 ENTREZGENE
IMAGE_CLONE IMAGE:7304052 IMAGE-MGC_LOAD
InterPro Pecanex UniProtKB/TrEMBL
  Pecanex_C UniProtKB/TrEMBL
KEGG Report rno:309167 UniProtKB/TrEMBL
MGC_CLONE MGC:106010 IMAGE-MGC_LOAD
NCBI Gene 309167 ENTREZGENE
PANTHER PECANEX-LIKE PROTEIN 3 UniProtKB/TrEMBL
  PTHR12372 UniProtKB/TrEMBL
Pfam Pecanex_C UniProtKB/TrEMBL
PhenoGen Pcnx3 PhenoGen
RatGTEx ENSRNOG00000020742 RatGTEx
UniProt A0A8I6AU25 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSQ1 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-20 Pcnx3  pecanex 3  Pcnx3  pecanex homolog 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-06-20 Pcnx3  pecanex homolog 3  Pcnx3  pecanex homolog 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-27 Pcnx3  pecanex homolog 3 (Drosophila)  Pcnxl3  pecanex-like 3 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pcnxl3  pecanex-like 3 (Drosophila)  Pcnxl3_predicted  pecanex-like 3 (Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pcnxl3_predicted  pecanex-like 3 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED