Despr9 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Despr9 (Despair related QTL 9) Rattus norvegicus

Symbol: Despr9
Name: Despair related QTL 9
RGD ID: 1354653
Previously known as: Climb2; Desp9
Trait: locomotor behavior trait   (VT:0001392)    
Measurement Type: amount of experiment time spent in a discrete space in an experimental apparatus   (CMO:0000958)    
LOD Score: Not Available
P Value: 1.9E-4
Variance: 2.7
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81177,339,686 - 222,339,686RGD_MAPPER_PIPELINE
mRatBN7.21167,909,849 - 212,909,849RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01185,390,068 - 230,390,068RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01192,322,095 - 237,322,095RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41172,723,568 - 217,723,568RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.11172,873,561 - 217,873,561RGD
Cross Type: Not Available
Strains Crossed: WKY/NHsd F344/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9Ratdepressive disorder  IAGP 1302894 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9Ratbehavioral despair  IAGP 1302894 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9Ratamount of experiment time spent in a discrete space in an experimental apparatus  IDA 1302894 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9Ratcontrol condition  IDA 1302894 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9RatMorris water maze method  IDA 1302894 RGD 
Despr9Ratvisual assessment of in vivo video recording  IDA 1302894 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9RatF344/NHsd  IEA 1302894 RGD 
Despr9RatWKY/NHsd  IEA 1302894 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Despr9Ratlocomotor behavior trait  IDA 1302894 RGD 


#
Reference Title
Reference Citation
1. Sex- and lineage-specific inheritance of depression-like behavior in the rat. Solberg LC, etal., Mamm Genome 2004 Aug;15(8):648-62.


1 to 20 of 1095 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
619918Spon1spondin 11167929049168228239Rat
11466449LOC10834962060S ribosomal protein L31 pseudogene1168146986168147396Rat
1310793Rras2RAS related 21168233693168303111Rat
1598283Rpl27a-ps4ribosomal protein L27a, pseudogene 41168336483168336924Rat
1586255Rps14-ps6ribosomal protein S14, pseudogene 61168339073168339543Rat
1565301Rps18l4ribosomal protein S18-like 41168385938168386642Rat
620861Copb1COPI coat complex subunit beta 11168404334168438589Rat
61841Psma1proteasome 20S subunit alpha 11168442421168453440Rat
41368180Atp5mj-ps1ATP synthase membrane subunit j, pseudogene 11168472019168472630Rat
61943Pde3bphosphodiesterase 3B1168606762168770078Rat
7667300LOC102548890ubiquitin-like protein FUBI-like1168627468168627978Rat
1311866Cyp2r1cytochrome P450, family 2, subfamily r, polypeptide 11168749302168798079Rat
2254Calcacalcitonin-related polypeptide alpha1168878212168883176Rat
620997Calcbcalcitonin-related polypeptide, beta1168965383168970259Rat
1311379InscINSC, spindle orientation adaptor protein1168993032169100438Rat
40942999LOC120100423small nucleolar RNA SNORA171169083085169083212Rat
41367209LOC120097959uncharacterized LOC1200979591169464515169471269Rat
1309000Sox6SRY-box transcription factor 61169723306170334846Rat
40995085Trnav-aac35transfer RNA valine (anticodon AAC) 351169956121169956193Rat
1311703C1h11orf58similar to human chromosome 11 open reading frame 581170334950170346864Rat

1 to 20 of 1095 rows
1 to 20 of 1448 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
41164D1Rat2792231167936424167936647Ratregion
42504D1Rat4311951168009655168009850Ratregion
5073892RH1376991511168149138168149289Ratregion
5072796RH1370582171168228624168228841Ratregion
8693308rs81709171168228760168228760Ratregion
5027341C86394821168233945168234027Ratregion
5051242RH1345211801168234569168234749Ratregion
5031336PMC140962P12141168234719168234933Ratregion
38812D1Rat2432391168278025168278264Ratregion
5067194AU04775301168383983168384025Ratregion
5081344Copb12281168404382168404610Ratregion
5029683AA8592021381168404504168404642Ratregion
7193073AA8592029401168404589168405529Ratregion
5082617BE1198591781168407924168408102Ratregion
1633971D1Got3242841168413465168413749Ratregion
5056005RH1441281451168441156168441301Ratregion
5086258AI2350781791168625480168625659Ratregion
1641235D1Wox602071168768601168768808Ratregion
5076868RH1394251341168769774168769908Ratregion
1640419D1Wox752271168791280168791507Ratregion
1 to 20 of 1448 rows

Peak: (D1Rat147)
Rat AssemblyChrPosition (strand)Source
GRCr81199,839,579 - 199,839,794 (+)Marker Load Pipeline
mRatBN7.21190,409,744 - 190,409,955 (+)MAPPER
Rnor_6.01207,889,961 - 207,890,175NCBI
Rnor_5.01214,821,988 - 214,822,202UniSTS
RGSC_v3.41195,223,461 - 195,223,676RGD
RGSC_v3.41195,223,462 - 195,223,676UniSTS
RGSC_v3.11195,373,454 - 195,373,668RGD
Celera1188,124,302 - 188,124,520UniSTS
RH 3.4 Map11432.1UniSTS
RH 3.4 Map11432.1RGD
RH 2.0 Map11023.3RGD
SHRSP x BN Map199.2499RGD
Cytogenetic Map1q41UniSTS


1 to 10 of 158 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat

1 to 10 of 158 rows


Database
Acc Id
Source(s)
NCBI Gene Despr9


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Despr9  Despair related QTL 9  Desp9    Symbol updated 1299863 APPROVED

Note Type Note Reference
qtl_map syntenic to a region of human 11p15.5 that may contribute to susceptibility to bipolar disorder 1302894
qtl_map syntenic to a region of mouse chromosome 7 that may be involved in anxiety/emotionality susceptibility 1302894