Tcirg1 (T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3) - Rat Genome Database

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Gene: Tcirg1 (T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3) Rattus norvegicus
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Symbol: Tcirg1
Name: T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
RGD ID: 735136
Description: Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within several processes, including T cell activation; cation homeostasis; and odontogenesis. Predicted to be located in several cellular components, including apical plasma membrane; cytoplasmic vesicle; and lysosome. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 1. Orthologous to human TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase, H+ transporting, lysosomal V0 protein a; MGC72583; OC116; osteoclastic proton pump; T cell immune response cDNA7 protein; T-cell, immune regulator 1; T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein a; T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein a isoform 3; T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3; T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3; TIRC7; v-ATPase 116-kDa; v-H+ATPase subunit a3; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a isoform 3; V-type proton ATPase 116 kDa subunit a3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21201,127,034 - 201,138,787 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,127,034 - 201,138,742 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,500,301 - 209,509,672 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01216,589,084 - 216,598,473 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01209,263,286 - 209,272,675 (-)NCBIRnor_WKY
Rnor_6.01219,126,687 - 219,139,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,127,602 - 219,139,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,999,292 - 226,012,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,420,106 - 206,429,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,573,497 - 206,585,222 (-)NCBI
Celera1198,679,648 - 198,689,037 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosis. Frattini A, etal., Nat Genet. 2000 Jul;25(3):343-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Alternative splicing controls neuronal expression of v-ATPase subunit a1 and sorting to nerve terminals. Poea-Guyon S, etal., J Biol Chem. 2006 Jun 23;281(25):17164-72. Epub 2006 Apr 18.
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Three subunit a isoforms of mouse vacuolar H(+)-ATPase. Preferential expression of the a3 isoform during osteoclast differentiation. Toyomura T, etal., J Biol Chem 2000 Mar 24;275(12):8760-5.
Additional References at PubMed
PMID:12477932   PMID:12672822   PMID:15284856   PMID:15294947   PMID:15800125   PMID:16542376   PMID:16797412   PMID:17046993   PMID:17897319   PMID:18614015   PMID:18768394   PMID:19448635  
PMID:19549681   PMID:20711468   PMID:21305608   PMID:22087326   PMID:22245629   PMID:22351931   PMID:23166162   PMID:23174213   PMID:23288846   PMID:23297412   PMID:23704209   PMID:23908015  
PMID:29712939  


Genomics

Comparative Map Data
Tcirg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21201,127,034 - 201,138,787 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,127,034 - 201,138,742 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,500,301 - 209,509,672 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01216,589,084 - 216,598,473 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01209,263,286 - 209,272,675 (-)NCBIRnor_WKY
Rnor_6.01219,126,687 - 219,139,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,127,602 - 219,139,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,999,292 - 226,012,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,420,106 - 206,429,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,573,497 - 206,585,222 (-)NCBI
Celera1198,679,648 - 198,689,037 (-)NCBICelera
Cytogenetic Map1q43NCBI
TCIRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,039,025 - 68,053,762 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1168,039,025 - 68,050,895 (+)EnsemblGRCh38hg38GRCh38
GRCh371167,806,492 - 67,818,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,563,059 - 67,574,942 (+)NCBINCBI36Build 36hg18NCBI36
Celera1165,140,155 - 65,152,040 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,141,805 - 64,153,709 (+)NCBIHuRef
CHM1_11167,690,218 - 67,702,120 (+)NCBICHM1_1
T2T-CHM13v2.01168,042,666 - 68,054,536 (+)NCBIT2T-CHM13v2.0
Tcirg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,946,050 - 3,957,717 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,946,050 - 3,957,133 (-)EnsemblGRCm39 Ensembl
GRCm38193,896,050 - 3,907,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,896,050 - 3,907,133 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,896,050 - 3,907,133 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,896,053 - 3,905,230 (-)NCBIMGSCv36mm8
Celera193,776,425 - 3,787,508 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.62NCBI
Tcirg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,768,469 - 17,779,003 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,768,469 - 17,778,976 (-)NCBIChiLan1.0ChiLan1.0
TCIRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11166,429,435 - 66,441,327 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,429,435 - 66,441,327 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01163,120,913 - 63,132,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TCIRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,784,480 - 49,794,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,784,490 - 49,794,317 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,393,818 - 48,403,688 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,705,711 - 50,715,580 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,703,574 - 50,715,558 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11849,919,281 - 49,929,147 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,494,101 - 49,503,970 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,287,643 - 50,297,518 (-)NCBIUU_Cfam_GSD_1.0
Tcirg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,627,790 - 5,636,842 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365992,070,211 - 2,079,169 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCIRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,844,637 - 4,860,498 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,844,627 - 4,860,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,476,372 - 3,488,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCIRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,484,469 - 6,497,008 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl16,484,474 - 6,494,719 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038103,762,696 - 103,775,284 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcirg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,809,689 - 18,820,390 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,809,626 - 18,820,360 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tcirg1
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:36
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000023425
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642722214537671Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1193422268214537671Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1185145134221264292Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1359018Hrtrt20Heart rate QTL 203.08heart pumping trait (VT:2000009)heart rate (CMO:0000002)1185356336202902618Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1199773958202166723Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164747424209747424Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1188377360224054420Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 53 37 19 37 12 25 31 11
Low 1 41 4 4 4 8 11 62 10 10 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000023425   ⟹   ENSRNOP00000023425
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1201,127,034 - 201,138,742 (-)Ensembl
Rnor_6.0 Ensembl1219,127,602 - 219,139,449 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089107   ⟹   ENSRNOP00000074537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1201,127,036 - 201,135,172 (-)Ensembl
Rnor_6.0 Ensembl1219,127,740 - 219,139,464 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104991   ⟹   ENSRNOP00000079519
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1201,127,034 - 201,138,733 (-)Ensembl
RefSeq Acc Id: NM_199089   ⟹   NP_954520
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,127,097 - 201,136,486 (-)NCBI
Rnor_6.01219,127,801 - 219,137,190 (-)NCBI
Rnor_5.01225,999,292 - 226,012,069 (-)NCBI
RGSC_v3.41206,420,106 - 206,429,495 (-)RGD
Celera1198,679,648 - 198,689,037 (-)RGD
Sequence:
RefSeq Acc Id: XM_006230727   ⟹   XP_006230789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,127,034 - 201,138,786 (-)NCBI
Rnor_6.01219,126,687 - 219,139,466 (-)NCBI
Rnor_5.01225,999,292 - 226,012,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230728   ⟹   XP_006230790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,127,034 - 201,138,755 (-)NCBI
Rnor_6.01219,126,687 - 219,139,466 (-)NCBI
Rnor_5.01225,999,292 - 226,012,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760097   ⟹   XP_008758319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,127,034 - 201,138,771 (-)NCBI
Rnor_6.01219,126,687 - 219,139,466 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108180   ⟹   XP_038964108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,127,034 - 201,136,541 (-)NCBI
RefSeq Acc Id: XM_039108190   ⟹   XP_038964118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,128,047 - 201,138,787 (-)NCBI
RefSeq Acc Id: XR_005503303
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21201,127,034 - 201,138,755 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_954520   ⟸   NM_199089
- UniProtKB: Q2I6B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230790   ⟸   XM_006230728
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006230789   ⟸   XM_006230727
- Peptide Label: isoform X1
- UniProtKB: G3V887 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758319   ⟸   XM_008760097
- Peptide Label: isoform X1
- UniProtKB: G3V887 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074537   ⟸   ENSRNOT00000089107
RefSeq Acc Id: ENSRNOP00000023425   ⟸   ENSRNOT00000023425
RefSeq Acc Id: XP_038964108   ⟸   XM_039108180
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038964118   ⟸   XM_039108190
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000079519   ⟸   ENSRNOT00000104991

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V887-F1-model_v2 AlphaFold G3V887 1-834 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690602
Promoter ID:EPDNEW_R1126
Type:initiation region
Name:Tcirg1_1
Description:T-cell immune regulator 1, ATPase H+ transporting V0 subunitA3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01219,139,403 - 219,139,463EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735136 AgrOrtholog
BioCyc Gene G2FUF-56799 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000017220 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000023425.5 UniProtKB/TrEMBL
  ENSRNOP00000074537.1 UniProtKB/TrEMBL
  ENSRNOP00000079519 ENTREZGENE
  ENSRNOP00000079519.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023425.7 UniProtKB/TrEMBL
  ENSRNOT00000089107 ENTREZGENE
  ENSRNOT00000089107.2 UniProtKB/TrEMBL
  ENSRNOT00000104991 ENTREZGENE
  ENSRNOT00000104991.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5598499 IMAGE-MGC_LOAD
InterPro ATPase_V0/A0-cplx_116kDa_su UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/TrEMBL
KEGG Report rno:293650 UniProtKB/TrEMBL
MGC_CLONE MGC:72583 IMAGE-MGC_LOAD
NCBI Gene 293650 ENTREZGENE
PANTHER ATPase_V0/A0_116 UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/TrEMBL
PhenoGen Tcirg1 PhenoGen
PIRSF ATP6V0A1 UniProtKB/TrEMBL
UniProt A0A8I5ZND3_RAT UniProtKB/TrEMBL
  G3V887 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B0 ENTREZGENE, UniProtKB/TrEMBL
  Q6P735_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Tcirg1  T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3  Tcirg1  T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Tcirg1  T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3  Tcirg1  T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tcirg1  T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3  Tcirg1  T-cell, immune regulator 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Tcirg1  T-cell, immune regulator 1    T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein a isoform 3  Name updated 1299863 APPROVED