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Gene: Gtf3c1 (general transcription factor IIIC subunit 1) Rattus norvegicus
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Symbol: Gtf3c1
Name: general transcription factor IIIC subunit 1
Description: Predicted to contribute to RNA polymerase III general transcription initiation factor activity. Predicted to be involved in 5S class rRNA transcription by RNA polymerase III and transcription initiation from RNA polymerase III promoter. Predicted to localize to the nucleus and ribonucleoprotein complex. Orthologous to human GTF3C1 (general transcription factor IIIC subunit 1); PARTICIPATES IN RNA polymerase III transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: general transcription factor 3C polypeptide 1; general transcription factor III C 1; general transcription factor IIIC, polypeptide 1, alpha; TF3C-alpha; TFIIIC 220 kDa subunit; TFIIIC box B-binding subunit; TFIIIC220; transcription factor IIIC 220 kDa subunit; transcription factor IIIC subunit alpha
Orthologs:
Homo sapiens (human) : GTF3C1 (general transcription factor IIIC subunit 1)  HGNC  Alliance
Mus musculus (house mouse) : Gtf3c1 (general transcription factor III C 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gtf3c1 (general transcription factor IIIC subunit 1)
Pan paniscus (bonobo/pygmy chimpanzee) : GTF3C1 (general transcription factor IIIC subunit 1)
Canis lupus familiaris (dog) : GTF3C1 (general transcription factor IIIC subunit 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gtf3c1 (general transcription factor IIIC subunit 1)
Sus scrofa (pig) : GTF3C1 (general transcription factor IIIC subunit 1)
more info ...
Is Marker For: Strains:   WAG.OXYS-(D1Rat219-D1Rat81)/Nov  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01197,032,473 - 197,098,676 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,032,474 - 197,098,649 (-)Ensembl
Rnor_5.01204,016,933 - 204,083,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,701,886 - 184,768,061 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11184,851,766 - 184,917,942 (-)NCBI
Celera1177,873,349 - 177,939,574 (-)NCBICelera
Cytogenetic Map1q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Gtf3c1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621048
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.