Plekha1 (pleckstrin homology domain containing A1)

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Gene: Plekha1 (pleckstrin homology domain containing A1) Rattus norvegicus

Analyze

Symbol:

Plekha1

Name:

pleckstrin homology domain containing A1

RGD ID:

1564153

Description:

Predicted to enable PDZ domain binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in several processes, including B cell receptor signaling pathway; negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and phosphatidylinositol 3-kinase/protein kinase B signal transduction. Predicted to act upstream of or within several processes, including androgen metabolic process; face morphogenesis; and gonad development. Predicted to be located in cytosol; nucleoplasm; and ruffle membrane. Predicted to be active in cytoplasm and membrane. Orthologous to human PLEKHA1 (pleckstrin homology domain containing A1); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361659; MGC156706; pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1; pleckstrin homology domain-containing family A member 1; pleckstrin homology domain-containing protein family A member 1; RGD1564153; similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1); similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (TAPP-1); tandem PH domain containing protein-1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	185,427,982 - 185,479,157 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	185,428,048 - 185,479,156 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	193,778,280 - 193,829,384 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	200,956,894 - 201,007,940 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	193,628,667 - 193,679,713 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	201,429,716 - 201,481,411 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	201,429,771 - 201,480,877 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	190,187,202 - 190,238,309 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	183,040,481 - 183,091,589 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

craniosynostosis (ISO)

genetic disease (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

chloroprene (EXP)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

ethanol (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

L-methionine (ISO)

menadione (ISO)

methapyrilene (EXP)

nickel sulfate (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

rimonabant (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

T-2 toxin (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

Triptolide (EXP)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

androgen metabolic process (ISO)

B cell receptor signaling pathway (ISO)

biological_process (ND)

cellular response to hydrogen peroxide (ISO)

establishment of protein localization (ISO)

estrogen metabolic process (ISO)

face morphogenesis (ISO)

female gonad development (ISO)

Leydig cell differentiation (ISO)

luteinization (ISO)

multicellular organism growth (ISO)

negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

platelet-derived growth factor receptor signaling pathway (ISO)

post-embryonic development (ISO)

roof of mouth development (ISO)

ruffle organization (ISO)

skeletal system morphogenesis (ISO)

spermatogenesis (ISO)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (IEA,ISO)

membrane (IBA)

nucleoplasm (IEA,ISO)

plasma membrane (ISO)

ruffle membrane (ISO)

Molecular Function

PDZ domain binding (IBA,ISO)

phosphatidylinositol-3,4-bisphosphate binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

phosphatidylinositol 3-kinase class I signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11001876	PMID:11802782	PMID:12101241	PMID:12477932	PMID:14516276	PMID:15485858	PMID:17143286	PMID:17823121	PMID:19056867	PMID:19056881

Genomics

Comparative Map Data

Plekha1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	185,427,982 - 185,479,157 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	185,428,048 - 185,479,156 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	193,778,280 - 193,829,384 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	200,956,894 - 201,007,940 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	193,628,667 - 193,679,713 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	201,429,716 - 201,481,411 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	201,429,771 - 201,480,877 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	190,187,202 - 190,238,309 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	183,040,481 - 183,091,589 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

PLEKHA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	122,374,708 - 122,442,600 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	122,374,696 - 122,432,354 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	124,134,224 - 124,202,116 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	124,124,210 - 124,181,856 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	124,141,832 - 124,181,856	NCBI
Celera	10	117,866,583 - 117,924,124 (+)	NCBI		Celera
Cytogenetic Map	10	q26.13	NCBI
HuRef	10	117,764,924 - 117,822,671 (+)	NCBI		HuRef
CHM1_1	10	124,418,717 - 124,476,463 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	123,270,978 - 123,338,841 (+)	NCBI		T2T-CHM13v2.0

Plekha1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	130,462,281 - 130,515,224 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	130,467,486 - 130,515,042 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	130,860,551 - 130,913,494 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	130,865,756 - 130,913,312 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	138,009,424 - 138,056,816 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	130,657,058 - 130,704,450 (+)	NCBI		MGSCv36	mm8
Celera	7	130,676,697 - 130,724,178 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	73.19	NCBI

Plekha1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	659,641 - 732,627 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	659,640 - 730,394 (+)	NCBI	ChiLan1.0	ChiLan1.0

PLEKHA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	10	134,235,565 - 134,293,121 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	118,942,896 - 119,001,185 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	122,354,773 - 122,412,588 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	122,354,765 - 122,412,588 (+)	Ensembl	panpan1.1		panPan2

PLEKHA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	32,025,791 - 32,081,824 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	32,026,350 - 32,081,835 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	32,100,800 - 32,156,873 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	32,561,443 - 32,617,733 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	32,561,576 - 32,617,733 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	32,093,840 - 32,149,960 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	32,115,324 - 32,171,582 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	32,319,773 - 32,376,120 (+)	NCBI		UU_Cfam_GSD_1.0

Plekha1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	14,322,684 - 14,377,443 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936486	11,203,873 - 11,241,028 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLEKHA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	131,960,939 - 132,016,652 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	131,960,932 - 132,016,664 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	143,414,765 - 143,470,533 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLEKHA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	115,110,316 - 115,168,113 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	115,128,942 - 115,165,576 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	76,408,461 - 76,466,336 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plekha1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624737	24,299,199 - 24,365,459 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Plekha1
194 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	327
Count of miRNA genes:	190
Interacting mature miRNAs:	254
Transcripts:	ENSRNOT00000027836
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383668	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	166532971	191278129	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169112897	197261052	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	174133260	196383668	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
2325725	Eae31	Experimental allergic encephalomyelitis QTL 31			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	178810256	188377506	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	181133855	226133855	Rat
61378	Bp43	Blood pressure QTL 43	22.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	181746937	196383668	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	181759564	214537555	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	181829673	224569684	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	182623426	219932796	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	183970203	243914901	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	183970203	243914901	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	184550676	229550676	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	185145134	221264292	Rat
1359018	Hrtrt20	Heart rate QTL 20	3.08		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	185356336	202902618	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	185356336	231689108	Rat

Markers in Region

AW527407

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	185,461,021 - 185,461,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	201,462,743 - 201,462,864	NCBI	Rnor6.0
Rnor_5.0	1	208,495,689 - 208,495,810	UniSTS	Rnor5.0
RGSC_v3.4	1	190,220,174 - 190,220,295	UniSTS	RGSC3.4
Celera	1	183,073,454 - 183,073,575	UniSTS
RH 3.4 Map	1	1427.0	UniSTS
Cytogenetic Map	1	q37	UniSTS

RH138768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	185,479,432 - 185,479,559 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	201,481,154 - 201,481,280	NCBI	Rnor6.0
Rnor_5.0	1	208,514,100 - 208,514,226	UniSTS	Rnor5.0
RGSC_v3.4	1	190,238,585 - 190,238,711	UniSTS	RGSC3.4
Celera	1	183,091,865 - 183,091,991	UniSTS
RH 3.4 Map	1	1424.9	UniSTS
Cytogenetic Map	1	q37	UniSTS

BF387732

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	185,452,462 - 185,452,614 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	201,454,184 - 201,454,335	NCBI	Rnor6.0
Rnor_5.0	1	208,487,130 - 208,487,281	UniSTS	Rnor5.0
RGSC_v3.4	1	190,211,615 - 190,211,766	UniSTS	RGSC3.4
Celera	1	183,064,895 - 183,065,046	UniSTS
RH 3.4 Map	1	1427.0	UniSTS
Cytogenetic Map	1	q37	UniSTS

AW527407

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	185,461,023 - 185,461,119 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	201,462,745 - 201,462,840	NCBI	Rnor6.0
Rnor_5.0	1	208,495,691 - 208,495,786	UniSTS	Rnor5.0
RGSC_v3.4	1	190,220,176 - 190,220,271	UniSTS	RGSC3.4
Celera	1	183,073,456 - 183,073,551	UniSTS
RH 3.4 Map	1	1427.0	UniSTS
Cytogenetic Map	1	q37	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	38	22	19	22	6	6	74	35	39	11	6
Low			19	19		19	2	5			2		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000027836 ⟹ ENSRNOP00000027836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	185,428,048 - 185,479,156 (+)	Ensembl
Rnor_6.0 Ensembl	1	201,429,771 - 201,480,877 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078244 ⟹ ENSRNOP00000071765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	185,428,048 - 185,478,133 (+)	Ensembl
Rnor_6.0 Ensembl	1	201,438,447 - 201,478,813 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107296 ⟹ ENSRNOP00000081390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	185,428,048 - 185,478,133 (+)	Ensembl

RefSeq Acc Id:

NM_001079894 ⟹ NP_001073363

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,428,057 - 185,479,157 (+)	NCBI
Rnor_6.0	1	201,429,771 - 201,480,878 (+)	NCBI
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI
RGSC_v3.4	1	190,187,202 - 190,238,309 (+)	RGD
Celera	1	183,040,481 - 183,091,589 (+)	RGD

Sequence:

show sequence

CGCGTGCGCAGTGCGCGGGCGGGCCGTCGTGGGCGCCGCTCCGGGCAGCTGAGTGCCTGAAGGA
GCCGGGACCGCGGTGGCGCGGGTGCTCCGGGCGGAGGCCGCGTGTAATGTTCAAGCCCAGAAAT
GCCTTATGTGGATCGACAGAATCGCATCTGTGGTTTTCTAGACATTGAGGAAAATGAGAACAGC
GGGAAATTTCTTCGACGGTATTTCATCCTGGATACCAGAGAGGACAGCTTTGTATGGTACATGG
ATAATCCACAGAACCTGCCTTCAGGATCATCACGGGTTGGAGCCATTAAACTTACCTACATTTC
AAAGGTTAGCGATGCGACTAAGTTAAGGCCAAAGGCAGAGTTTTGTTTTGTTATGAATGCAGGA
ATGAGAAAATACTTTCTACAAGCTAATGATCAGCAGGACTTAGTGGAGTGGGTAAATGTCTTGA
ACAAAGCTATAAAAATTACAGTACCAAAGCAGTCAGACTCACAGCCGGCCTCTGATAACCTGAG
TCGCCAAGGTGACTGTGGCAAGAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGTGTACCC
ATCATCACTCCAACACAGAAAGAAGAAGTAAACGAATGTGGTGAGAGTGTCGACAGAAACAATT
TGAAACGGTCACAAAGCCATCTTCCTTACTTTGCTCCTAAGCCACCTGCAGACAGTGCAGTCAT
CAAAGCTGGGTATTGTGTGAAACAAGGAGCGGTGATGAAAAACTGGAAGAGAAGGTATTTTCAG
CTGGATGAAAACACAATAGGCTACTTCAAGTCTGAACTGGAAAAGGAGCCTCTGCGGGTAATAC
CACTTAAAGAAGTTCACAAAGTCCAAGAGTGCAAGCAAAGTGACATTATGATGAGGGACAACCT
GTTTGAAATCGTGACAACGTCTCGGACTTTCTATGTGCAGGCTGATAGCCCTGAGGAGATGCAC
AGTTGGATTAAAGCAGTCTCTGGAGCTATTGTAGCACAGCGGGGACCGGGCAGATCATCATCAT
CTTCTATGCGGCAGGCCAGAAGGCTGTCGAACCCTTGTATACAGAGGTATACGTCAAGAGCTGG
CGAATGCAGCACGTATGTGGGCTCTCATGCAAATGTGCCTTCTTAGTAGAAGGCCTGGACTCGC
TCCTCCTTACAGCTGATCAGAGAAGGAGCATTCCAGCTGTCCTTCAGAATCCAAATACACTGTC
CGTCTTGCCGGGGCAGCAGCCGCCGCCACCTCACATTCCGCAGCCTCTCGCAGCCACTCTCTGG
TCTCAAGCTATACCATGGAGAAGCGAGGATTTTACGAATCTCTTGCCAAGGTCAAGCCAGGGAA
CTTCAAGGTCCAGACTGTCTCTCCAAGAGAACCAGCTTCCAAAGTGACTGAACATGCTCTGCCC
AGACCTCAGAGTAAAAACGGCCCTCAGGGAGAAGATGGTGAGCCAGTGGACTTAGATGACGCCA
GCCTGCCAGTCAGCGATGTGTGAGGGGGGAGCACGTGGGCTGCCTGCGCCACTCACCCTCAGTG
TCCTTCCATGAGGCTTCTCGCCAAAGATGATAGAGGGTGAATGATCTCAGTGCATATGTTAGAC
TGCCTCGTGGGTGTGCTCTGTAAGCTGGCAAACTAGGAGGCAGGGAGTGGCTGAGGCAACATAA
TTTCTTTAAGAAAGGAAGGAGAAAAGCTGTGTCCATATTGACTGTCTGAAGCTTTACATGTTTG
GGTGGCAAAAATGTGTGTGTGATCTTTTTTTTCTCTTAGTGACTTTGAAATTTTAAATAACAAC
TTAAAACATTAAAATTTCTTATTTTGGCCATTTAAACATGCTAATATGACTCCCTATGAAATAT
TCAATATTTATACATTCTTATCAGCTAACATTATCAAGTGGGACATTCCCAGACAAAAATTTCT
CAACTCATGATGTCTGTGGTGCTGCAGAATTTATATCACAACGTGGACCATTTAGAAATTCTAA
CCGTTTATGATATTCTGGCTGTCCAGGTGAGTGGAAAATTTCGCATAGAAGATTGGATTACACT
ATTGGTGCAGGTGGGAGTTGAACAGGGCTAGAAGAAGGGGAGATTGGAGGTCAGCTATAGCTAA
TGTTTTTTTTTTTTTTCTTTTGTGGGGAGGGTACTTTTTTATTTTTATTTTGGTGACTGGATTT
TTCTGTGTAGCCATGGCTGTCCTGGAACTCATTCTGTAGACCAGACTGCCCTTGAACTTGTGGT
GATCCTTCTGCTGCCTCTGTTGTCTCCCAAATTATAGGATTGTGTCACCAACTTGCAACCTAAG
ACACTTGTTTTAAAAAGCTTAGTATTTTATTTTAGTAAAAATTGTTTGGTCATAAATTTTGAAA
AGATCTGATTTTTTTTTTTTAATCAAAGTTTTGTAAATAGATCTTATTTCTGAATTTGGACCAG
TGAAAGACCTCAGTTCACATGCTAAGTCAAAATGGCCCTTAGTCATGAACTTGTTGTGGCTCTC
CCTTTTCATCATTAGTAACCTACCCTCAAGTGCCTGTGTCTTCTCATCTCACTTAGGATTGTGC
CCCAGAGTCCTACATGATTGGCTTTAAATGTCCAAATAAATGAATTTCAGTAGCGTAGTTTGAT
ATTTTAAATAAGATAGCATTTTATATCAGAGACACCAGAATGTTGGTGTTCATCTGCCTGTGCA
ATATGTATGTCTTGAAAACCAGAATTGAGTATGCAGTAAGCGTGGGGCTCTCATACATAGAAGC
ACCTCTCTGGAGGACCAAGTGTCTGCTGTCAAGTGCTGGCGGGTTTGAGCAAGCACTGTTTTGT
GGCAACATTGTCAGTGTTTGCCTGCCCCAGGCTGCTGCTCCATGGCATCTCCAGTCTTGGACTT
GTGTCTTGGAGTTGTGGGTGTTAGTGTTTCGCCTTTTTATGTTATAAGACTACTTGTCGGAGGA
TGAAAGATTTGCTACAGTGGTCTAGGGTTAAGATGTGCTATTTAGTTGCCCAGCACAAGAACGT
ACCACTCACCTTTTCTACTCATAAGCTAATGTGTTAGAGTTCTATGTCGTTTTCTCTTGTGCAC
CTGCATTAGAAAACCATAGGACAGCAAGGTCGTTAAGTAGCTATCACCTCTGCTGCCGTATTCA
TGTCCAGGCTCTCAGAAGTCCTTCATGAACACACCTAGGGACCCTTGTACAGAGTCTTGGCAGT
ATGGATGAGCCTGGCACGGTTTTCTTTGGTACAGCCTCCACAGTGCACGTTCATTTTATCATAT
TTTGGTATTGGTAATTTGATAACATTTCATGGTGGTAAAATATTAGCTCTATTTTGGGACTTTT
TATAGAACTACATTTATTCGAAAGCATAGGAATATGTTCTTGTGATTATCAGGATCTCCTAATA
TTTATCTCAATTCTTTTGTAAGCTTATGGAAATTATTTAATTATTTTAAAGCATATTTTACTGT
AAATATGTCATATCTGAAGTGTCAGTAGTTACTTTGAATACCGTACTATTTGCTGTATTTTTTC
CTGTGTGTATACTGTATCCTTCCAGAACAGGAGTGTACCTCCTAATGTTCACTGTCACACTGCT
CTATGTGTGTCCGGTTGGTTGAACACTGTACTGACTTGAGAATAAACTGCTCGCAATCCATTGT
CACTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415980 ⟹ NP_001402909

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,428,057 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_006230409 ⟹ XP_006230471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,991 - 185,479,157 (+)	NCBI
Rnor_6.0	1	201,429,717 - 201,481,411 (+)	NCBI
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI

Sequence:

show sequence

GTGCCCGCTCCGGAATCTCAGTCGCTGTCTGGTCGGGTAGAGGCAGCGCGTGCACGCGTGCGCA
GTGCGCGGGCGGGCCGTCGTGGGCGCCGCTCCGGGCAGCTGAGTGCCTGAAGGAGCCGGGACCG
CGGTGGCGCGGGTGCTCCGGGCGGAGGCCGCGTGTAATGTTCAAGCCCAGAAATGCCTTATGTG
GATCGACAGAATCGCATCTGTGGTTTTCTAGACATTGAGGAAAATGAGAACAGCGGGAAATTTC
TTCGACGGTATTTCATCCTGGATACCAGAGAGGACAGCTTTGTATGGTACATGGATAATCCACA
GAACCTGCCTTCAGGATCATCACGGGTTGGAGCCATTAAACTTACCTACATTTCAAAGGTTAGC
GATGCGACTAAGTTAAGGCCAAAGGCAGAGTTTTGTTTTGTTATGAATGCAGGAATGAGAAAAT
ACTTTCTACAAGCTAATGATCAGCAGGACTTAGTGGAGTGGGTAAATGTCTTGAACAAAGCTAT
AAAAATTACAGTACCAAAGCAGTCAGACTCACAGCCGGCCTCTGATAACCTGAGTCGCCAAGGT
GACTGTGGCAAGAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGTGTACCCATCATCACTC
CAACACAGGTGACAAGTCAGCGCTTCTGTTACGTGGAGAAAGAAGAAGTAAACGAATGTGGTGA
GAGTGTCGACAGAAACAATTTGAAACGGTCACAAAGCCATCTTCCTTACTTTGCTCCTAAGCCA
CCTGCAGACAGTGCAGTCATCAAAGCTGGGTATTGTGTGAAACAAGGAGCGGTGATGAAAAACT
GGAAGAGAAGGTATTTTCAGCTGGATGAAAACACAATAGGCTACTTCAAGTCTGAACTGGAAAA
GGAGCCTCTGCGGGTAATACCACTTAAAGAAGTTCACAAAGTCCAAGAGTGCAAGCAAAGTGAC
ATTATGATGAGGGACAACCTGTTTGAAATCGTGACAACGTCTCGGACTTTCTATGTGCAGGCTG
ATAGCCCTGAGGAGATGCACAGTTGGATTAAAGCAGTCTCTGGAGCTATTGTAGCACAGCGGGG
ACCGGGCAGATCATCATCATCTTCTGAGCATTCCAGCTGTCCTTCAGAATCCAAATACACTGTC
CGTCTTGCCGGGGCAGCAGCCGCCGCCACCTCACATTCCGCAGCCTCTCGCAGCCACTCTCTGG
TCTCAAGCTATACCATGGAGAAGCGAGGATTTTACGAATCTCTTGCCAAGGTCAAGCCAGGGAA
CTTCAAGGTCCAGACTGTCTCTCCAAGAGAACCAGCTTCCAAAGTGACTGAACATGCTCTGCCC
AGACCTCAGAGTAAAAACGGCCCTCAGGGAGAAGATGGTGAGCCAGTGGACTTAGATGACGCCA
GCCTGCCAGTCAGCGATGTGTGAGGGGGGAGCACGTGGGCTGCCTGCGCCACTCACCCTCAGTG
TCCTTCCATGAGGCTTCTCGCCAAAGATGATAGAGGGTGAATGATCTCAGTGCATATGTTAGAC
TGCCTCGTGGGTGTGCTCTGTAAGCTGGCAAACTAGGAGGCAGGGAGTGGCTGAGGCAACATAA
TTTCTTTAAGAAAGGAAGGAGAAAAGCTGTGTCCATATTGACTGTCTGAAGCTTTACATGTTTG
GGTGGCAAAAATGTGTGTGTGATCTTTTTTTTCTCTTAGTGACTTTGAAATTTTAAATAACAAC
TTAAAACATTAAAATTTCTTATTTTGGCCATTTAAACATGCTAATATGACTCCCTATGAAATAT
TCAATATTTATACATTCTTATCAGCTAACATTATCAAGTGGGACATTCCCAGACAAAAATTTCT
CAACTCATGATGTCTGTGGTGCTGCAGAATTTATATCACAACGTGGACCATTTAGAAATTCTAA
CCGTTTATGATATTCTGGCTGTCCAGGTGAGTGGAAAATTTCGCATAGAAGATTGGATTACACT
ATTGGTGCAGGTGGGAGTTGAACAGGGCTAGAAGAAGGGGAGATTGGAGGTCAGCTATAGCTAA
TGTTTTTTTTTTTTTTCTTTTGTGGGGAGGGTACTTTTTTATTTTTATTTTGGTGACTGGATTT
TTCTGTGTAGCCATGGCTGTCCTGGAACTCATTCTGTAGACCAGACTGCCCTTGAACTTGTGGT
GATCCTTCTGCTGCCTCTGTTGTCTCCCAAATTATAGGATTGTGTCACCAACTTGCAACCTAAG
ACACTTGTTTTAAAAAGCTTAGTATTTTATTTTAGTAAAAATTGTTTGGTCATAAATTTTGAAA
AGATCTGATTTTTTTTTTTTAATCAAAGTTTTGTAAATAGATCTTATTTCTGAATTTGGACCAG
TGAAAGACCTCAGTTCACATGCTAAGTCAAAATGGCCCTTAGTCATGAACTTGTTGTGGCTCTC
CCTTTTCATCATTAGTAACCTACCCTCAAGTGCCTGTGTCTTCTCATCTCACTTAGGATTGTGC
CCCAGAGTCCTACATGATTGGCTTTAAATGTCCAAATAAATGAATTTCAGTAGCGTAGTTTGAT
ATTTTAAATAAGATAGCATTTTATATCAGAGACACCAGAATGTTGGTGTTCATCTGCCTGTGCA
ATATGTATGTCTTGAAAACCAGAATTGAGTATGCAGTAAGCGTGGGGCTCTCATACATAGAAGC
ACCTCTCTGGAGGACCAAGTGTCTGCTGTCAAGTGCTGGCGGGTTTGAGCAAGCACTGTTTTGT
GGCAACATTGTCAGTGTTTGCCTGCCCCAGGCTGCTGCTCCATGGCATCTCCAGTCTTGGACTT
GTGTCTTGGAGTTGTGGGTGTTAGTGTTTCGCCTTTTTATGTTATAAGACTACTTGTCGGAGGA
TGAAAGATTTGCTACAGTGGTCTAGGGTTAAGATGTGCTATTTAGTTGCCCAGCACAAGAACGT
ACCACTCACCTTTTCTACTCATAAGCTAATGTGTTAGAGTTCTATGTCGTTTTCTCTTGTGCAC
CTGCATTAGAAAACCATAGGACAGCAAGGTCGTTAAGTAGCTATCACCTCTGCTGCCGTATTCA
TGTCCAGGCTCTCAGAAGTCCTTCATGAACACACCTAGGGACCCTTGTACAGAGTCTTGGCAGT
ATGGATGAGCCTGGCACGGTTTTCTTTGGTACAGCCTCCACAGTGCACGTTCATTTTATCATAT
TTTGGTATTGGTAATTTGATAACATTTCATGGTGGTAAAATATTAGCTCTATTTTGGGACTTTT
TATAGAACTACATTTATTCGAAAGCATAGGAATATGTTCTTGTGATTATCAGGATCTCCTAATA
TTTATCTCAATTCTTTTGTAAGCTTATGGAAATTATTTAATTATTTTAAAGCATATTTTACTGT
AAATATGTCATATCTGAAGTGTCAGTAGTTACTTTGAATACCGTACTATTTGCTGTATTTTTTC
CTGTGTGTATACTGTATCCTTCCAGAACAGGAGTGTACCTCCTAATGTTCACTGTCACACTGCT
CTATGTGTGTCCGGTTGGTTGAACACTGTACTGACTTGAGAATAAACTGCTCGCAATCCATTGT
CACTCAGTTCCCATGTTGTTTGGTTCAGCGCTCATGTGAACAAGTCAGCAGAACTGATAAGAAA
CGTTTTTGCTTAGTTCAATGCTTACTTACCATTGAGCAAACAGATTTCATGCCAGGTGGTATGT
ACGAGGCTGGTAGACAGCCAGTGAGTTCCAGGCCAGCCAGGGTTAATCAGAGAAACCCTATCTT
GAAAAAAAAATTCAGATCCTTGAATTCTTGGGGTTTGTTATTGCTTTTTGTTTTCTTGTTTGTT
TGTTGTTTGTTTTTGAGACAGGGTCTCACTTTGTAGTCTTGGCTGGCCTGAAACTCAGTATGTA
GACTATGTGGGCATTGAATTCACAGAGATCCTCCTGTCTCTGCTTCCCAGGTGCTAGAATTGTA
AAAGTGTATACCAACAGGCCCAGCAGACCCATGAATTCTTAAGACAGCTTTGTATGAAATTGCA
CAAAGAAAATGTCTGTGTGTTTAGAACATACTTGCTCTTTTTCCTTTAAAAAAAAAAGTTCTTA
CAATTAAATGTGAAAATTCCCTGTGAA

hide sequence

RefSeq Acc Id:

XM_006230412 ⟹ XP_006230474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,990 - 185,479,157 (+)	NCBI
Rnor_6.0	1	201,429,716 - 201,481,411 (+)	NCBI
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI

Sequence:

show sequence

AGTGCCCGCTCCGGAATCTCAGTCGCTGTCTGGTCGGGTAGAGGCAGCGCGTGCACGCGTGCGC
AGTGCGCGGGCGGGCCGTCGTGGGCGCCGCTCCGGGCAGCTGAGTGCCTGAAGGAGCCGGGACC
GCGGTGGCGCGGGTGCTCCGGGCGGAGGCCGCGTGTAATGTTCAAGCCCAGAAATGCCTTATGT
GGATCGACAGAATCGCATCTGTGGTTTTCTAGACATTGAGGAAAATGAGAACAGCGGGAAATTT
CTTCGACGGTATTTCATCCTGGATACCAGAGAGGACAGCTTTGTATGGTACATGGATAATCCAC
AGAACCTGCCTTCAGGATCATCACGGGTTGGAGCCATTAAACTTACCTACATTTCAAAGGTTAG
CGATGCGACTAAGTTAAGGCCAAAGGCAGAGTTTTGTTTTGTTATGAATGCAGGAATGAGAAAA
TACTTTCTACAAGCTAATGATCAGCAGGACTTAGTGGAGTGGGTAAATGTCTTGAACAAAGCTA
TAAAAATTACAGTACCAAAGCAGTCAGACTCACAGCCGGCCTCTGATAACCTGAGTCGCCAAGG
TGACTGTGGCAAGAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGTGTACCCATCATCACT
CCAACACAGGTGACAAGTCAGCGCTTCTGTTACGTGGAGAAAGAAGAAGTAAACGAATGTGGTG
AGAGTGTCGACAGAAACAATTTGAAACGGTCACAAAGCCATCTTCCTTACTTTGCTCCTAAGCC
ACCTGCAGACAGTGCAGTCATCAAAGCTGGGTATTGTGTGAAACAAGGAGCGGTGATGAAAAAC
TGGAAGAGAAGGTATTTTCAGCTGGATGAAAACACAATAGGCTACTTCAAGTCTGAACTGGAAA
AGGAGCCTCTGCGGGTAATACCACTTAAAGAAGTTCACAAAGTCCAAGAGTGCAAGCAAAGTGA
CATTATGATGAGGGACAACCTGTTTGAAATCGTGACAACGTCTCGGACTTTCTATGTGCAGGCT
GATAGCCCTGAGGAGATGCACAGTTGGATTAAAGCAGTCTCTGGAGCTATTGTAGCACAGCGGG
GACCGGGCAGATCATCATCATCTTCTATGCGGCAGGCCAGAAGGCTGTCGAACCCTTGTATACA
GAGGTATACGTCAAGAGCTGGCGAATGCAGCACGAGCATTCCAGCTGTCCTTCAGAATCCAAAT
ACACTGTCCGTCTTGCCGGGGCAGCAGCCGCCGCCACCTCACATTCCGCAGCCTCTCGCAGCCA
CTCTCTGGTCTCAAGCTATACCATGGAGAAGCGAGGATTTTACGAATCTCTTGCCAAGGTCAAG
CCAGGGAACTTCAAGGTCCAGACTGTCTCTCCAAGAGAACCAGCTTCCAAAGTGACTGAACATG
CTCTGCCCAGACCTCAGAGTAAAAACGGCCCTCAGGGAGAAGATGGTGAGCCAGTGGACTTAGA
TGACGCCAGCCTGCCAGTCAGCGATGTGTGAGGGGGGAGCACGTGGGCTGCCTGCGCCACTCAC
CCTCAGTGTCCTTCCATGAGGCTTCTCGCCAAAGATGATAGAGGGTGAATGATCTCAGTGCATA
TGTTAGACTGCCTCGTGGGTGTGCTCTGTAAGCTGGCAAACTAGGAGGCAGGGAGTGGCTGAGG
CAACATAATTTCTTTAAGAAAGGAAGGAGAAAAGCTGTGTCCATATTGACTGTCTGAAGCTTTA
CATGTTTGGGTGGCAAAAATGTGTGTGTGATCTTTTTTTTCTCTTAGTGACTTTGAAATTTTAA
ATAACAACTTAAAACATTAAAATTTCTTATTTTGGCCATTTAAACATGCTAATATGACTCCCTA
TGAAATATTCAATATTTATACATTCTTATCAGCTAACATTATCAAGTGGGACATTCCCAGACAA
AAATTTCTCAACTCATGATGTCTGTGGTGCTGCAGAATTTATATCACAACGTGGACCATTTAGA
AATTCTAACCGTTTATGATATTCTGGCTGTCCAGGTGAGTGGAAAATTTCGCATAGAAGATTGG
ATTACACTATTGGTGCAGGTGGGAGTTGAACAGGGCTAGAAGAAGGGGAGATTGGAGGTCAGCT
ATAGCTAATGTTTTTTTTTTTTTTCTTTTGTGGGGAGGGTACTTTTTTATTTTTATTTTGGTGA
CTGGATTTTTCTGTGTAGCCATGGCTGTCCTGGAACTCATTCTGTAGACCAGACTGCCCTTGAA
CTTGTGGTGATCCTTCTGCTGCCTCTGTTGTCTCCCAAATTATAGGATTGTGTCACCAACTTGC
AACCTAAGACACTTGTTTTAAAAAGCTTAGTATTTTATTTTAGTAAAAATTGTTTGGTCATAAA
TTTTGAAAAGATCTGATTTTTTTTTTTTAATCAAAGTTTTGTAAATAGATCTTATTTCTGAATT
TGGACCAGTGAAAGACCTCAGTTCACATGCTAAGTCAAAATGGCCCTTAGTCATGAACTTGTTG
TGGCTCTCCCTTTTCATCATTAGTAACCTACCCTCAAGTGCCTGTGTCTTCTCATCTCACTTAG
GATTGTGCCCCAGAGTCCTACATGATTGGCTTTAAATGTCCAAATAAATGAATTTCAGTAGCGT
AGTTTGATATTTTAAATAAGATAGCATTTTATATCAGAGACACCAGAATGTTGGTGTTCATCTG
CCTGTGCAATATGTATGTCTTGAAAACCAGAATTGAGTATGCAGTAAGCGTGGGGCTCTCATAC
ATAGAAGCACCTCTCTGGAGGACCAAGTGTCTGCTGTCAAGTGCTGGCGGGTTTGAGCAAGCAC
TGTTTTGTGGCAACATTGTCAGTGTTTGCCTGCCCCAGGCTGCTGCTCCATGGCATCTCCAGTC
TTGGACTTGTGTCTTGGAGTTGTGGGTGTTAGTGTTTCGCCTTTTTATGTTATAAGACTACTTG
TCGGAGGATGAAAGATTTGCTACAGTGGTCTAGGGTTAAGATGTGCTATTTAGTTGCCCAGCAC
AAGAACGTACCACTCACCTTTTCTACTCATAAGCTAATGTGTTAGAGTTCTATGTCGTTTTCTC
TTGTGCACCTGCATTAGAAAACCATAGGACAGCAAGGTCGTTAAGTAGCTATCACCTCTGCTGC
CGTATTCATGTCCAGGCTCTCAGAAGTCCTTCATGAACACACCTAGGGACCCTTGTACAGAGTC
TTGGCAGTATGGATGAGCCTGGCACGGTTTTCTTTGGTACAGCCTCCACAGTGCACGTTCATTT
TATCATATTTTGGTATTGGTAATTTGATAACATTTCATGGTGGTAAAATATTAGCTCTATTTTG
GGACTTTTTATAGAACTACATTTATTCGAAAGCATAGGAATATGTTCTTGTGATTATCAGGATC
TCCTAATATTTATCTCAATTCTTTTGTAAGCTTATGGAAATTATTTAATTATTTTAAAGCATAT
TTTACTGTAAATATGTCATATCTGAAGTGTCAGTAGTTACTTTGAATACCGTACTATTTGCTGT
ATTTTTTCCTGTGTGTATACTGTATCCTTCCAGAACAGGAGTGTACCTCCTAATGTTCACTGTC
ACACTGCTCTATGTGTGTCCGGTTGGTTGAACACTGTACTGACTTGAGAATAAACTGCTCGCAA
TCCATTGTCACTCAGTTCCCATGTTGTTTGGTTCAGCGCTCATGTGAACAAGTCAGCAGAACTG
ATAAGAAACGTTTTTGCTTAGTTCAATGCTTACTTACCATTGAGCAAACAGATTTCATGCCAGG
TGGTATGTACGAGGCTGGTAGACAGCCAGTGAGTTCCAGGCCAGCCAGGGTTAATCAGAGAAAC
CCTATCTTGAAAAAAAAATTCAGATCCTTGAATTCTTGGGGTTTGTTATTGCTTTTTGTTTTCT
TGTTTGTTTGTTGTTTGTTTTTGAGACAGGGTCTCACTTTGTAGTCTTGGCTGGCCTGAAACTC
AGTATGTAGACTATGTGGGCATTGAATTCACAGAGATCCTCCTGTCTCTGCTTCCCAGGTGCTA
GAATTGTAAAAGTGTATACCAACAGGCCCAGCAGACCCATGAATTCTTAAGACAGCTTTGTATG
AAATTGCACAAAGAAAATGTCTGTGTGTTTAGAACATACTTGCTCTTTTTCCTTTAAAAAAAAA
AGTTCTTACAATTAAATGTGAAAATTCCCTGTGAA

hide sequence

RefSeq Acc Id:

XM_006230413 ⟹ XP_006230475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,991 - 185,479,157 (+)	NCBI
Rnor_6.0	1	201,429,717 - 201,481,411 (+)	NCBI
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI

Sequence:

show sequence

GTGCCCGCTCCGGAATCTCAGTCGCTGTCTGGTCGGGTAGAGGCAGCGCGTGCACGCGTGCGCA
GTGCGCGGGCGGGCCGTCGTGGGCGCCGCTCCGGGCAGCTGAGTGCCTGAAGGAGCCGGGACCG
CGGTGGCGCGGGTGCTCCGGGCGGAGGCCGCGTGTAATGTTCAAGCCCAGAAATGCCTTATGTG
GATCGACAGAATCGCATCTGTGGTTTTCTAGACATTGAGGAAAATGAGAACAGCGGGAAATTTC
TTCGACGGTATTTCATCCTGGATACCAGAGAGGACAGCTTTGTATGGTACATGGATAATCCACA
GAACCTGCCTTCAGGATCATCACGGGTTGGAGCCATTAAACTTACCTACATTTCAAAGGTTAGC
GATGCGACTAAGTTAAGGCCAAAGGCAGAGTTTTGTTTTGTTATGAATGCAGGAATGAGAAAAT
ACTTTCTACAAGCTAATGATCAGCAGGACTTAGTGGAGTGGGTAAATGTCTTGAACAAAGCTAT
AAAAATTACAGTACCAAAGCAGTCAGACTCACAGCCGGCCTCTGATAACCTGAGTCGCCAAGGT
GACTGTGGCAAGAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGTGTACCCATCATCACTC
CAACACAGGTGACAAGTCAGCGCTTCTGTTACGTGGAGAAAGAAGAAGTAAACGAATGTGGTGA
GAGTGTCGACAGAAACAATTTGAAACGGTCACAAAGCCATCTTCCTTACTTTGCTCCTAAGCCA
CCTGCAGACAGTGCAGTCATCAAAGCTGGGTATTGTGTGAAACAAGGAGCGGTGATGAAAAACT
GGAAGAGAAGGTATTTTCAGCTGGATGAAAACACAATAGGCTACTTCAAGTCTGAACTGGAAAA
GGAGCCTCTGCGGGTAATACCACTTAAAGAAGTTCACAAAGTCCAAGAGTGCAAGCAAAGTGAC
ATTATGATGAGGGACAACCTGTTTGAAATCGTGACAACGTCTCGGACTTTCTATGTGCAGGCTG
ATAGCCCTGAGGAGATGCACAGTTGGATTAAAGCAGTCTCTGGAGCTATTGTAGCACAGCGGGG
ACCGGGCAGATCATCATCATCTTCTATGCGGCAGGCCAGAAGGCTGTCGAACCCTTGTATACAG
AGGAGCATTCCAGCTGTCCTTCAGAATCCAAATACACTGTCCGTCTTGCCGGGGCAGCAGCCGC
CGCCACCTCACATTCCGCAGCCTCTCGCAGCCACTCTCTGGTCTCAAGCTATACCATGGAGAAG
CGAGGATTTTACGAATCTCTTGCCAAGGTCAAGCCAGGGAACTTCAAGGTCCAGACTGTCTCTC
CAAGAGAACCAGCTTCCAAAGTGACTGAACATGCTCTGCCCAGACCTCAGAGTAAAAACGGCCC
TCAGGGAGAAGATGGTGAGCCAGTGGACTTAGATGACGCCAGCCTGCCAGTCAGCGATGTGTGA
GGGGGGAGCACGTGGGCTGCCTGCGCCACTCACCCTCAGTGTCCTTCCATGAGGCTTCTCGCCA
AAGATGATAGAGGGTGAATGATCTCAGTGCATATGTTAGACTGCCTCGTGGGTGTGCTCTGTAA
GCTGGCAAACTAGGAGGCAGGGAGTGGCTGAGGCAACATAATTTCTTTAAGAAAGGAAGGAGAA
AAGCTGTGTCCATATTGACTGTCTGAAGCTTTACATGTTTGGGTGGCAAAAATGTGTGTGTGAT
CTTTTTTTTCTCTTAGTGACTTTGAAATTTTAAATAACAACTTAAAACATTAAAATTTCTTATT
TTGGCCATTTAAACATGCTAATATGACTCCCTATGAAATATTCAATATTTATACATTCTTATCA
GCTAACATTATCAAGTGGGACATTCCCAGACAAAAATTTCTCAACTCATGATGTCTGTGGTGCT
GCAGAATTTATATCACAACGTGGACCATTTAGAAATTCTAACCGTTTATGATATTCTGGCTGTC
CAGGTGAGTGGAAAATTTCGCATAGAAGATTGGATTACACTATTGGTGCAGGTGGGAGTTGAAC
AGGGCTAGAAGAAGGGGAGATTGGAGGTCAGCTATAGCTAATGTTTTTTTTTTTTTTCTTTTGT
GGGGAGGGTACTTTTTTATTTTTATTTTGGTGACTGGATTTTTCTGTGTAGCCATGGCTGTCCT
GGAACTCATTCTGTAGACCAGACTGCCCTTGAACTTGTGGTGATCCTTCTGCTGCCTCTGTTGT
CTCCCAAATTATAGGATTGTGTCACCAACTTGCAACCTAAGACACTTGTTTTAAAAAGCTTAGT
ATTTTATTTTAGTAAAAATTGTTTGGTCATAAATTTTGAAAAGATCTGATTTTTTTTTTTTAAT
CAAAGTTTTGTAAATAGATCTTATTTCTGAATTTGGACCAGTGAAAGACCTCAGTTCACATGCT
AAGTCAAAATGGCCCTTAGTCATGAACTTGTTGTGGCTCTCCCTTTTCATCATTAGTAACCTAC
CCTCAAGTGCCTGTGTCTTCTCATCTCACTTAGGATTGTGCCCCAGAGTCCTACATGATTGGCT
TTAAATGTCCAAATAAATGAATTTCAGTAGCGTAGTTTGATATTTTAAATAAGATAGCATTTTA
TATCAGAGACACCAGAATGTTGGTGTTCATCTGCCTGTGCAATATGTATGTCTTGAAAACCAGA
ATTGAGTATGCAGTAAGCGTGGGGCTCTCATACATAGAAGCACCTCTCTGGAGGACCAAGTGTC
TGCTGTCAAGTGCTGGCGGGTTTGAGCAAGCACTGTTTTGTGGCAACATTGTCAGTGTTTGCCT
GCCCCAGGCTGCTGCTCCATGGCATCTCCAGTCTTGGACTTGTGTCTTGGAGTTGTGGGTGTTA
GTGTTTCGCCTTTTTATGTTATAAGACTACTTGTCGGAGGATGAAAGATTTGCTACAGTGGTCT
AGGGTTAAGATGTGCTATTTAGTTGCCCAGCACAAGAACGTACCACTCACCTTTTCTACTCATA
AGCTAATGTGTTAGAGTTCTATGTCGTTTTCTCTTGTGCACCTGCATTAGAAAACCATAGGACA
GCAAGGTCGTTAAGTAGCTATCACCTCTGCTGCCGTATTCATGTCCAGGCTCTCAGAAGTCCTT
CATGAACACACCTAGGGACCCTTGTACAGAGTCTTGGCAGTATGGATGAGCCTGGCACGGTTTT
CTTTGGTACAGCCTCCACAGTGCACGTTCATTTTATCATATTTTGGTATTGGTAATTTGATAAC
ATTTCATGGTGGTAAAATATTAGCTCTATTTTGGGACTTTTTATAGAACTACATTTATTCGAAA
GCATAGGAATATGTTCTTGTGATTATCAGGATCTCCTAATATTTATCTCAATTCTTTTGTAAGC
TTATGGAAATTATTTAATTATTTTAAAGCATATTTTACTGTAAATATGTCATATCTGAAGTGTC
AGTAGTTACTTTGAATACCGTACTATTTGCTGTATTTTTTCCTGTGTGTATACTGTATCCTTCC
AGAACAGGAGTGTACCTCCTAATGTTCACTGTCACACTGCTCTATGTGTGTCCGGTTGGTTGAA
CACTGTACTGACTTGAGAATAAACTGCTCGCAATCCATTGTCACTCAGTTCCCATGTTGTTTGG
TTCAGCGCTCATGTGAACAAGTCAGCAGAACTGATAAGAAACGTTTTTGCTTAGTTCAATGCTT
ACTTACCATTGAGCAAACAGATTTCATGCCAGGTGGTATGTACGAGGCTGGTAGACAGCCAGTG
AGTTCCAGGCCAGCCAGGGTTAATCAGAGAAACCCTATCTTGAAAAAAAAATTCAGATCCTTGA
ATTCTTGGGGTTTGTTATTGCTTTTTGTTTTCTTGTTTGTTTGTTGTTTGTTTTTGAGACAGGG
TCTCACTTTGTAGTCTTGGCTGGCCTGAAACTCAGTATGTAGACTATGTGGGCATTGAATTCAC
AGAGATCCTCCTGTCTCTGCTTCCCAGGTGCTAGAATTGTAAAAGTGTATACCAACAGGCCCAG
CAGACCCATGAATTCTTAAGACAGCTTTGTATGAAATTGCACAAAGAAAATGTCTGTGTGTTTA
GAACATACTTGCTCTTTTTCCTTTAAAAAAAAAAGTTCTTACAATTAAATGTGAAAATTCCCTG
TGAA

hide sequence

RefSeq Acc Id:

XM_006230415 ⟹ XP_006230477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,990 - 185,476,818 (+)	NCBI
Rnor_6.0	1	201,429,716 - 201,478,489 (+)	NCBI
Rnor_5.0	1	208,462,186 - 208,513,824 (+)	NCBI

Sequence:

show sequence

AGTGCCCGCTCCGGAATCTCAGTCGCTGTCTGGTCGGGTAGAGGCAGCGCGTGCACGCGTGCGC
AGTGCGCGGGCGGGCCGTCGTGGGCGCCGCTCCGGGCAGCTGAGTGCCTGAAGGAGCCGGGACC
GCGGTGGCGCGGGTGCTCCGGGCGGAGGCCGCGTGTAATGTTCAAGCCCAGAAATGCCTTATGT
GGATCGACAGAATCGCATCTGTGGTTTTCTAGACATTGAGGAAAATGAGAACAGCGGGAAATTT
CTTCGACGGTATTTCATCCTGGATACCAGAGAGGACAGCTTTGTATGGTACATGGATAATCCAC
AGAACCTGCCTTCAGGATCATCACGGGTTGGAGCCATTAAACTTACCTACATTTCAAAGGTTAG
CGATGCGACTAAGTTAAGGCCAAAGGCAGAGTTTTGTTTTGTTATGAATGCAGGAATGAGAAAA
TACTTTCTACAAGCTAATGATCAGCAGGACTTAGTGGAGTGGGTAAATGTCTTGAACAAAGCTA
TAAAAATTACAGTACCAAAGCAGTCAGACTCACAGCCGGCCTCTGATAACCTGAGTCGCCAAGG
TGACTGTGGCAAGAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGTGTACCCATCATCACT
CCAACACAGGTGACAAGTCAGCGCTTCTGTTACGTGGAGAAAGAAGAAGTAAACGAATGTGGTG
AGAGTGTCGACAGAAACAATTTGAAACGGTCACAAAGCCATCTTCCTTACTTTGCTCCTAAGCC
ACCTGCAGACAGTGCAGTCATCAAAGCTGGGTATTGTGTGAAACAAGGAGCGGTGATGAAAAAC
TGGAAGAGAAGGTATTTTCAGCTGGATGAAAACACAATAGGCTACTTCAAGTCTGAACTGGAAA
AGGAGCCTCTGCGGGTAATACCACTTAAAGAAGTTCACAAAGTCCAAGAGTGCAAGCAAAGTGA
CATTATGATGAGGGACAACCTGTTTGAAATCGTGACAACGTCTCGGACTTTCTATGTGCAGGCT
GATAGCCCTGAGGAGATGCACAGTTGGATTAAAGCAGTCTCTGGAGCTATTGTAGCACAGCGGG
GACCGGGCAGATCATCATCATCTTCTATGCGGCAGGCCAGAAGGCTGTCGAACCCTTGTATACA
GAGGTATACGTCAAGAGCTGGCGAATGCAGCACGTATGTGGGCTCTCATGCAAATGTGCCTTCT
TAGTAGAAGGCCTGGACTCGCTCCTCCTTACAGCTGATCAGAGAAGGAGCATTCCAGCTGTCCT
TCAGAATCCAAATACACTGTCCGTCTTGCCGGGGCAGCAGCCGCCGCCACCTCACATTCCGCAG
CCTCTC

hide sequence

RefSeq Acc Id:

XM_039083107 ⟹ XP_038939035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,989 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083111 ⟹ XP_038939039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,428,246 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083114 ⟹ XP_038939042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,987 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083115 ⟹ XP_038939043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,428,245 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083129 ⟹ XP_038939057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,993 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083132 ⟹ XP_038939060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,989 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083140 ⟹ XP_038939068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,994 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083142 ⟹ XP_038939070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,995 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083154 ⟹ XP_038939082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,982 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083163 ⟹ XP_038939091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,987 - 185,476,818 (+)	NCBI

RefSeq Acc Id:

XM_039083170 ⟹ XP_038939098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,988 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083173 ⟹ XP_038939101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,990 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083180 ⟹ XP_038939108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,992 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083183 ⟹ XP_038939111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,443,743 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083184 ⟹ XP_038939112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,446,209 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083187 ⟹ XP_038939115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,440,447 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083191 ⟹ XP_038939119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,446,209 - 185,479,157 (+)	NCBI

RefSeq Acc Id:

XM_039083194 ⟹ XP_038939122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,990 - 185,476,818 (+)	NCBI

RefSeq Acc Id:

XM_039083200 ⟹ XP_038939128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,993 - 185,476,998 (+)	NCBI

RefSeq Acc Id:

XM_039083204 ⟹ XP_038939132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	185,427,989 - 185,476,998 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001073363	(Get FASTA)	NCBI Sequence Viewer
	NP_001402909	(Get FASTA)	NCBI Sequence Viewer
	XP_006230471	(Get FASTA)	NCBI Sequence Viewer
	XP_006230474	(Get FASTA)	NCBI Sequence Viewer
	XP_006230475	(Get FASTA)	NCBI Sequence Viewer
	XP_006230477	(Get FASTA)	NCBI Sequence Viewer
	XP_038939035	(Get FASTA)	NCBI Sequence Viewer
	XP_038939039	(Get FASTA)	NCBI Sequence Viewer
	XP_038939042	(Get FASTA)	NCBI Sequence Viewer
	XP_038939043	(Get FASTA)	NCBI Sequence Viewer
	XP_038939057	(Get FASTA)	NCBI Sequence Viewer
	XP_038939060	(Get FASTA)	NCBI Sequence Viewer
	XP_038939068	(Get FASTA)	NCBI Sequence Viewer
	XP_038939070	(Get FASTA)	NCBI Sequence Viewer
	XP_038939082	(Get FASTA)	NCBI Sequence Viewer
	XP_038939091	(Get FASTA)	NCBI Sequence Viewer
	XP_038939098	(Get FASTA)	NCBI Sequence Viewer
	XP_038939101	(Get FASTA)	NCBI Sequence Viewer
	XP_038939108	(Get FASTA)	NCBI Sequence Viewer
	XP_038939111	(Get FASTA)	NCBI Sequence Viewer
	XP_038939112	(Get FASTA)	NCBI Sequence Viewer
	XP_038939115	(Get FASTA)	NCBI Sequence Viewer
	XP_038939119	(Get FASTA)	NCBI Sequence Viewer
	XP_038939122	(Get FASTA)	NCBI Sequence Viewer
	XP_038939128	(Get FASTA)	NCBI Sequence Viewer
	XP_038939132	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI28753	(Get FASTA)	NCBI Sequence Viewer
	EDM17133	(Get FASTA)	NCBI Sequence Viewer
	EDM17134	(Get FASTA)	NCBI Sequence Viewer
	EDM17135	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027836
	ENSRNOP00000027836.3
	ENSRNOP00000071765
	ENSRNOP00000071765.2
	ENSRNOP00000081390.1

RefSeq Acc Id:	NP_001073363 ⟸ NM_001079894
- Peptide Label:	isoform 2
- UniProtKB:	A1A5P7 (UniProtKB/TrEMBL), A0A8I5ZUX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYI SKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDNL SRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGESVDRNNLKRSQSHLPYFAPKPPADSAV IKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDN LFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSSMRQARRLSNPCIQRYTSRA GECSTYVGSHANVPS hide sequence

RefSeq Acc Id:	XP_006230477 ⟸ XM_006230415
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I5ZUX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYI SKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDNL SRQGDCGKKQVSYRTDIVGGVPIITPTQVTSQRFCYVEKEEVNECGESVDRNNLKRSQSHLPYF APKPPADSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQEC KQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSSMRQARRLSN PCIQRYTSRAGECSTYVGSHANVPS hide sequence

RefSeq Acc Id:	XP_006230474 ⟸ XM_006230412
- Peptide Label:	isoform X5
- UniProtKB:	A6IA45 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYI SKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDNL SRQGDCGKKQVSYRTDIVGGVPIITPTQVTSQRFCYVEKEEVNECGESVDRNNLKRSQSHLPYF APKPPADSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQEC KQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSSMRQARRLSN PCIQRYTSRAGECSTSIPAVLQNPNTLSVLPGQQPPPPHIPQPLAATLWSQAIPWRSEDFTNLL PRSSQGTSRSRLSLQENQLPK hide sequence

RefSeq Acc Id:

XP_006230475 ⟸ XM_006230413

- Peptide Label:

isoform X8

- Sequence:

show sequence

MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYI
SKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDNL
SRQGDCGKKQVSYRTDIVGGVPIITPTQVTSQRFCYVEKEEVNECGESVDRNNLKRSQSHLPYF
APKPPADSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQEC
KQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSSMRQARRLSN
PCIQRSIPAVLQNPNTLSVLPGQQPPPPHIPQPLAATLWSQAIPWRSEDFTNLLPRSSQGTSRS
RLSLQENQLPK

hide sequence

RefSeq Acc Id:	XP_006230471 ⟸ XM_006230409
- Peptide Label:	isoform X2
- UniProtKB:	A6IA45 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYI SKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPASDNL SRQGDCGKKQVSYRTDIVGGVPIITPTQVTSQRFCYVEKEEVNECGESVDRNNLKRSQSHLPYF APKPPADSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQEC KQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSSEHSSCPSES KYTVRLAGAAAAATSHSAASRSHSLVSSYTMEKRGFYESLAKVKPGNFKVQTVSPREPASKVTE HALPRPQSKNGPQGEDGEPVDLDDASLPVSDV hide sequence

RefSeq Acc Id:

ENSRNOP00000071765 ⟸ ENSRNOT00000078244

RefSeq Acc Id:

ENSRNOP00000027836 ⟸ ENSRNOT00000027836

RefSeq Acc Id:	XP_038939082 ⟸ XM_039083154
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038939042 ⟸ XM_039083114
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939091 ⟸ XM_039083163
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZUX8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939098 ⟸ XM_039083170
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038939035 ⟸ XM_039083107
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939060 ⟸ XM_039083132
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038939132 ⟸ XM_039083204
- Peptide Label:	isoform X19
- UniProtKB:	A0A0G2K1A8 (UniProtKB/TrEMBL), A6IA46 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939101 ⟸ XM_039083173
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038939122 ⟸ XM_039083194
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038939108 ⟸ XM_039083180
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038939057 ⟸ XM_039083129
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038939128 ⟸ XM_039083200
- Peptide Label:	isoform X18
- UniProtKB:	A6IA45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939068 ⟸ XM_039083140
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038939070 ⟸ XM_039083142
- Peptide Label:	isoform X7
- UniProtKB:	A6IA45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939043 ⟸ XM_039083115
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939039 ⟸ XM_039083111
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939115 ⟸ XM_039083187
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038939111 ⟸ XM_039083183
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038939112 ⟸ XM_039083184
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038939119 ⟸ XM_039083191
- Peptide Label:	isoform X16

RefSeq Acc Id:

ENSRNOP00000081390 ⟸ ENSRNOT00000107296

RefSeq Acc Id:	NP_001402909 ⟸ NM_001415980
- Peptide Label:	isoform 1

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K1A8-F1-model_v2	AlphaFold	A0A0G2K1A8	1-385	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690470

Promoter ID:

EPDNEW_R995

Type:

initiation region

Name:

Plekha1_1

Description:

pleckstrin homology domain containing A1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	201,429,780 - 201,429,840	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564153	AgrOrtholog
BioCyc Gene	G2FUF-57246	BioCyc
Ensembl Genes	ENSRNOG00000020497	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027836	ENTREZGENE
	ENSRNOT00000027836.5	UniProtKB/TrEMBL
	ENSRNOT00000078244	ENTREZGENE
	ENSRNOT00000078244.2	UniProtKB/TrEMBL
	ENSRNOT00000107296.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7100072	IMAGE-MGC_LOAD
InterPro	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
KEGG Report	rno:361659	UniProtKB/TrEMBL
MGC_CLONE	MGC:156706	IMAGE-MGC_LOAD
NCBI Gene	361659	ENTREZGENE
PANTHER	PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 1	UniProtKB/TrEMBL
	TANDEM PH DOMAIN CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
PhenoGen	Plekha1	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020497	RatGTEx
SMART	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
UniProt	A0A0G2K1A8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZUX8	ENTREZGENE, UniProtKB/TrEMBL
	A1A5P7	ENTREZGENE, UniProtKB/TrEMBL
	A6IA45	ENTREZGENE, UniProtKB/TrEMBL
	A6IA46	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-30	Plekha1	pleckstrin homology domain containing A1	Plekha1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Plekha1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	RGD1564153_predicted	similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-10	RGD1564153_predicted	similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (predicted)		similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (TAPP-1) (predicted)	Name updated	1299863	APPROVED
2006-03-07	RGD1564153_predicted	similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (TAPP-1) (predicted)	LOC361659	similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (TAPP-1)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC361659	similar to Pleckstrin homology domain-containing protein family A member 1 (Tandem PH domain containing protein-1) (TAPP-1)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)