Kidm12 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Kidm12 (Kidney mass QTL 12) Rattus norvegicus

Symbol: Kidm12
Name: Kidney mass QTL 12
RGD ID: 1354634
Previously known as: Km12; QTL 1
Trait: kidney mass   (VT:0002707)    
Measurement Type: right kidney wet weight   (CMO:0000082)    
LOD Score: 3.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81160,573,753 - 210,707,719RGD_MAPPER_PIPELINE
mRatBN7.21151,162,512 - 201,278,233RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01161,784,169 - 219,232,156RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01167,997,630 - 226,102,807RGDRnor5.0
RGSC_v3.41154,074,905 - 206,567,907RGDRGSC3.4
RGSC_v3.11154,153,445 - 206,721,339RGD
Cross Type: intercross
Strains Crossed: LH/Mav LN/Mav 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12Rathypertension  IAGP 1302893 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12Ratabnormal kidney weight  QTM 1302893 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12Ratright kidney wet weight  IDA 1302893 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12Ratcontrol condition  IDA 1302893 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12Ratpost excision weight measurement  IDA 1302893 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12RatLH/Mav  IEA 1302893 RGD 
Kidm12RatLN/Mav  IEA 1302893 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm12Ratkidney mass  IDA 1302893 RGD 


#
Reference Title
Reference Citation
1. Mapping the genetic determinants of hypertension, metabolic diseases, and related phenotypes in the lyon hypertensive rat. Bilusic M, etal., Hypertension 2004 Nov;44(5):695-701. Epub 2004 Sep 27.


1 to 20 of 1199 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1304658Tenm4teneurin transmembrane protein 41149895097151263315Rat
41192708LOC120100172U6 spliceosomal RNA1151271287151271389Rat
1305145Nars2asparaginyl-tRNA synthetase 2, mitochondrial1151300446151412086Rat
11384002LOC108349194uncharacterized LOC1083491941151368864151379738Rat
621367Gab2GRB2-associated binding protein 21151429844151625708Rat
1565984Usp35ubiquitin specific peptidase 351151626195151649926Rat
1559529Kctd21potassium channel tetramerization domain containing 211151650074151669775Rat
1305468Alg8ALG8, alpha-1,3-glucosyltransferase1151684344151704310Rat
1307511Ndufc2NADH:ubiquinone oxidoreductase subunit C21151711965151718188Rat
3859Thrspthyroid hormone responsive1151723415151727740Rat
1562118Prdx1-ps2peroxiredoxin 1, pseudogene 21151735733151737057Rat
1306430Kctd14potassium channel tetramerization domain containing 141151761688151766693Rat
1305036Ints4integrator complex subunit 41151790062151853827Rat
1561459Aamdcadipogenesis associated, Mth938 domain containing1151861990151893621Rat
1311245Rsf1remodeling and spacing factor 11151892055152015089Rat
61884Clns1achloride nucleotide-sensitive channel 1A1152019369152039670Rat
7738972Rpl35-ps4ribosomal protein L35, pseudogene 41152027322152030883Rat
628763Aqp11aquaporin 111152046515152056675Rat
7711357LOC102550562uncharacterized LOC1025505621152076132152094061Rat
3250Pak1p21 (RAC1) activated kinase 11152111172152226390Rat

1 to 20 of 1199 rows
1 to 20 of 1457 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
38564D1Rat1402541151162512151162766Ratregion
5057556BE0955581501151237387151237537Ratregion
5503464ODZ4_33128221151258321151259143Ratregion
5034614BI2811771831151262831151263014Ratregion
5075322RH1385282011151404730151404931Ratregion
5078234RH1402211841151411670151411854Ratregion
5076332RH1391141201151517976151518096Ratregion
5034806AI0122962181151562973151563191Ratregion
5061148BI293082981151625461151625559Ratregion
5499945UniSTS:2357132211151626280151626500Ratregion
5033643RH1395742181151626317151626535Ratregion
5078546RH1404062441151626317151626561Ratregion
5083625BG381234961151666961151667057Ratregion
5054415RH1432111531151712027151712180Ratregion
5076462RH1391892281151712172151712400Ratregion
5502511RH1251627171151717339151718056Ratregion
5072004RH1354092121151723626151723838Ratregion
5499713UniSTS:234183971151736394151736491Ratregion
5088124Prdx21771151736757151736934Ratregion
5075380RH1385611211151744324151744445Ratregion
1 to 20 of 1457 rows

Flank 1: (D1Rat140)
Rat AssemblyChrPosition (strand)Source
GRCr81160,573,753 - 160,574,007 (+)Marker Load Pipeline
mRatBN7.21151,162,512 - 151,162,766 (+)MAPPER
Rnor_6.01161,784,169 - 161,784,422NCBI
Rnor_5.01167,997,630 - 167,997,883UniSTS
RGSC_v3.41154,074,905 - 154,075,310RGD
RGSC_v3.41154,075,039 - 154,075,292UniSTS
RGSC_v3.11154,153,445 - 154,153,698RGD
Celera1149,267,898 - 149,268,151UniSTS
RH 3.4 Map11155.2RGD
RH 3.4 Map11155.2UniSTS
RH 2.0 Map1761.4RGD
SHRSP x BN Map176.83RGD
FHH x ACI Map169.95RGD
Cytogenetic Map1q32UniSTS
Peak: (D1Rat278)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21165,279,278 - 165,279,420 (+)MAPPER
Rnor_6.01175,980,731 - 175,980,872NCBI
Rnor_5.01182,965,533 - 182,965,674UniSTS
RGSC_v3.41168,930,689 - 168,930,831RGD
RGSC_v3.41168,930,690 - 168,930,831UniSTS
RGSC_v3.11169,041,353 - 169,041,494RGD
Celera1163,167,625 - 163,167,766UniSTS
RH 3.4 Map11330.1UniSTS
RH 3.4 Map11330.1RGD
SHRSP x BN Map183.4799UniSTS
SHRSP x BN Map183.4799RGD
Flank 2: (D1Rat188)
Rat AssemblyChrPosition (strand)Source
GRCr81210,707,476 - 210,707,719 (+)Marker Load Pipeline
mRatBN7.21201,277,990 - 201,278,233 (+)MAPPER
Rnor_6.01219,231,914 - 219,232,156NCBI
Rnor_5.01226,102,565 - 226,102,807UniSTS
RGSC_v3.41206,567,563 - 206,567,907RGD
RGSC_v3.41206,567,644 - 206,567,886UniSTS
RGSC_v3.11206,721,097 - 206,721,339RGD
Celera1198,823,049 - 198,823,291UniSTS
RH 3.4 Map11558.9RGD
RH 3.4 Map11558.9UniSTS
RH 2.0 Map11126.4RGD
SHRSP x BN Map1106.0299RGD
FHH x ACI Map196.59RGD
Cytogenetic Map1q42UniSTS


1 to 10 of 152 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat

1 to 10 of 152 rows


Database
Acc Id
Source(s)
NCBI Gene Kidm12


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Kidm12  Kidney mass QTL 12  Km12    Symbol updated 1299863 APPROVED

Note Type Note Reference
qtl_cross_type intercross  
qtl_statistics_details linkage analysis performed with Mapmaker; parametric analysis used for traits with a normal distribution, for others nonparametric analysis used 1302893