D1Rat48 Marker Search Result - Rat Genome Database

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Symbol:

D1Rat48

Previously known as:

oxsts6706; R007-C06; R0007-C06;

RGD ID:

35329

Expected Size:

170 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	153,946,966 - 153,947,131 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	164,611,273 - 164,611,437	NCBI	Rnor6.0
Rnor_5.0	1	170,814,943 - 170,815,107	UniSTS	Rnor5.0
RGSC_v3.4	1	156,980,113 - 156,980,531	RGD	RGSC3.4
RGSC_v3.4	1	156,980,167 - 156,980,331	UniSTS	RGSC3.4
RGSC_v3.1	1	157,058,573 - 157,058,737	RGD
Celera	1	152,032,217 - 152,032,381	UniSTS
RH 3.4 Map	1	1242.9	UniSTS
RH 3.4 Map	1	1242.9	RGD
RH 2.0 Map	1	813.6	RGD
SHRSP x BN Map	1	77.8599	RGD
FHH x ACI Map	1	69.87	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines
6.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	ACTCTCAGTGCTGTGGCATG
Reverse Primer	GGAGATAAATGTTAGGGTATGTGGA

Template	GTCGACTCTAGAGGATCCCCCCTGACGACCTGAGTCTGATTCCTAGAACCCACATGGTAGAAGG AAAGAAGCAACTCTCAGTGCTGTGGCATGCAGGTGCACAGTTACACACACACACACACACACAC ACACACACACAAACACACACACTAAATTTAATAAAAAAGACTTTTGTGACATTAAGTACATCTA TATGTTTTCTGTATATCTAACTCTCCACATACCCTAACATTTATCTCCTTGTGTAGCATGTGAT TATCTACTTAGCCGTCCAGCTATCTACGACTCCATCTATCTAGCAGTTGGTGTAGTTAGGTTAC TGTTACTGTGATAAGACACTGACCAAACCTGAGTTGGGGGAGGGAGGGCTTGTTTGGCTTATAA ATTCCANTTGCAATCCATCTTTGAGGGAAGGAAGGCAGGGCAGGAACTCAAGGCAA

Strain Variation

Strain, Expected Size(s)

Region

Nucleotide Sequences


GenBank Nucleotide	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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