LOC120100172 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120100172 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120100172
Name: U6 spliceosomal RNA
RGD ID: 41192708
Description: Orthologous to human RNU6-398P (RNA, U6 small nuclear 398, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81160,682,523 - 160,682,625 (-)NCBIGRCr8
mRatBN7.21151,271,287 - 151,271,389 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,271,287 - 151,271,389 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1161,893,068 - 161,893,170 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120100172
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81160,682,523 - 160,682,625 (-)NCBIGRCr8
mRatBN7.21151,271,287 - 151,271,389 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,271,287 - 151,271,389 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1161,893,068 - 161,893,170 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q32NCBI
RNU6-398P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381460,974,327 - 60,974,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1460,974,327 - 60,974,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371461,441,045 - 61,441,153 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q23.1NCBI
CHM1_11461,380,326 - 61,380,434 (+)NCBICHM1_1
T2T-CHM13v2.01455,180,867 - 55,180,975 (+)NCBIT2T-CHM13v2.0

.

1 to 10 of 68 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat

1 to 10 of 68 rows





RefSeq Transcripts XR_005499964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,271,287 - 151,271,389 (-)Ensembl
RefSeq Acc Id: XR_005499964
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81160,682,523 - 160,682,625 (-)NCBI
mRatBN7.21151,271,287 - 151,271,389 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58463 BioCyc
Ensembl Genes ENSRNOG00000057140 Ensembl
NCBI Gene LOC120100172 ENTREZGENE
PhenoGen LOC120100172 PhenoGen
RatGTEx ENSRNOG00000057140 RatGTEx
RNAcentral URS0000719FE8 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100172  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15010776 737654 PROVISIONAL
2021-01-27 LOC120100172  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL