Bw104 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw104 (Body weight QTL 104) Rattus norvegicus

Symbol: Bw104
Name: Body weight QTL 104
RGD ID: 6893361
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 0.59
P Value: 0.27
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81143,092,939 - 188,092,939RGD_MAPPER_PIPELINE
mRatBN7.21133,680,936 - 178,680,936RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01144,395,993 - 189,395,993RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01150,585,707 - 195,585,707RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41136,792,830 - 181,792,830RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: WKY/Tkyo SHR/Tkyo 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104RatLeft Ventricular Hypertrophy  IAGP 1554311 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104Ratdecreased body weight  IDA 1554311 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104Ratbody weight  IDA 1554311 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104Ratcontrolled sodium content diet  IDA 1554311 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104Ratbody weighing method  IDA 1554311 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104RatSHR/Tkyo  IEA 1554311 RGD 
Bw104RatWKY/Tkyo  IEA 1554311 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw104Ratbody mass  IDA 1554311 RGD 


#
Reference Title
Reference Citation
1. Identification of quantitative trait loci for cardiac hypertrophy in two different strains of the spontaneously hypertensive rat. Inomata H, etal., Hypertens Res 2005 Mar;28(3):273-81.


1 to 20 of 912 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
619842Pex11aperoxisomal biogenesis factor 11 alpha1133680091133687172Rat
1559862Wdr93WD repeat domain 931133687254133737449Rat
2318883Snrpepl2small nuclear ribonucleoprotein polypeptide E like 21133709656133710137Rat
1311751Mesp1mesoderm posterior bHLH transcription factor 11133738357133739875Rat
1305959Mesp2mesoderm posterior bHLH transcription factor 21133756601133759207Rat
2991Anpepalanyl aminopeptidase, membrane1133767332133810137Rat
1586888Ap3s2adaptor related protein complex 3 subunit sigma 21133818825133859269Rat
1311021Arpinactin-related protein 2/3 complex inhibitor1133864288133873124Rat
41141871LOC120099870uncharacterized LOC1200998701133872984133879902Rat
1306491Zfp710zinc finger protein 7101133966256134036593Rat
1597139Idh2isocitrate dehydrogenase (NADP(+)) 21134038644134057969Rat
1589010Naa38-ps1N(alpha)-acetyltransferase 38, NatC auxiliary subunit, pseudogene 11134093191134093669Rat
7554600LOC102548818uncharacterized LOC1025488181134107741134110798Rat
7638459LOC102548889uncharacterized LOC1025488891134114350134128483Rat
1307872Sema4bsemaphorin 4B1134136646134177777Rat
620133Cib1calcium and integrin binding 11134178331134183895Rat
1560277Gdpgp1GDP-D-glucose phosphorylase 11134184119134193281Rat
1310399Ttll13tubulin tyrosine ligase like 131134197801134213083Rat
1583734Ngrnneugrin, neurite outgrowth associated1134213235134219348Rat
620644Vps33bVPS33B, late endosome and lysosome associated1134223967134247232Rat

1 to 20 of 912 rows
1 to 20 of 1022 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10165D1Wox341341164747424164747558Ratregion
10273D1Smu111931168879333168879526Ratregion
11033D1Mgh191971152441635152441834Ratregion
11142D1Smu91711177061421177061592Ratregion
11185D1Wox351541167512327167512481Ratregion
11270D1Smu81291176447349176447478Ratregion
33806D1Mit241091163747690163747797Ratregion
33806D1Mit241091163747690163748014Ratregion
33959D1Mit31371144267353144267490Ratregion
33959D1Mit31371144267353144267916Ratregion
34074D1Mgh81171153136852153136969Ratregion
11271D1Smu71431176447730176447875Ratregion
34300D1Mgh261371172711200172711337Ratregion
34399D1Mgh91431172949660172949803Ratregion
11473D1Wox381641154820746154820912Ratregion
33640D1Mit211481144314913144315053Ratregion
33640D1Mit211481144314913144315053Ratregion
33770D1Mit121691153920893153921062Ratregion
36075D1Rat491731154464069154464242Ratregion
36105D1Rat511861156677124156677310Ratregion
1 to 20 of 1022 rows

Peak: (Phox2a)
Rat AssemblyChrPosition (strand)Source
GRCr81165,590,757 - 165,595,122 (+)NCBI
mRatBN7.21156,178,754 - 156,183,118 (+)NCBI
mRatBN7.2 Ensembl1156,178,754 - 156,183,118 (+)Ensembl
UTH_Rnor_SHR_Utx1164,169,073 - 164,173,439 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01171,349,162 - 171,353,527 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01164,226,678 - 164,231,045 (+)NCBI
Rnor_6.01166,893,734 - 166,898,252 (+)NCBI
Rnor_6.0 Ensembl1166,893,734 - 166,898,252 (+)Ensembl
Rnor_5.01173,083,448 - 173,087,966 (+)NCBI
RGSC_v3.41159,273,524 - 159,312,136 (+)NCBI
RGSC_v3.11159,352,540 - 159,356,748 (+)NCBI
Celera1154,257,374 - 154,261,739 (+)NCBI
RH 3.4 Map11272.9RGD
Cytogenetic Map1q32NCBI


1 to 10 of 124 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat

1 to 10 of 124 rows



Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-24 Bw98  Body weight QTL 98  Bw106  Body weight QTL 106  Symbol updated 68687 APPROVED
2012-08-24 Bw98  Body weight QTL 98  Bw106  Body weight QTL 106  Name updated 68913 APPROVED
2012-08-24 Bw9106  Body weight QTL 106  Bw98  Body weight QTL 98  Symbol updated 68687 APPROVED
2012-08-24 Bw104  Body weight QTL 104  Bw106  Body weight QTL 106  Name updated 68913 APPROVED
2012-08-24 Bw106  Body weight QTL 106  Bw9106  Body weight QTL 106  Symbol updated 68687 APPROVED
2012-08-24 Bw106  Body weight QTL 106  Bw9106  Body weight QTL 106  Name updated 68913 APPROVED
2012-08-24 Bw104  Body weight QTL 104  Bw106  Body weight QTL 106  Symbol updated 68687 APPROVED
2012-08-24 Bw9106  Body weight QTL 106  Bw98  Body weight QTL 98  Name updated 68913 APPROVED

Note Type Note Reference
qtl_general number of animals used: 151 F2 males 1554311
qtl_general software used: MAPMAKER/QTL 1.1 1554311