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Gene: Pcf11 (PCF11 cleavage and polyadenylation factor subunit) Rattus norvegicus
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Symbol: Pcf11
Name: PCF11 cleavage and polyadenylation factor subunit
Description: Predicted to have RNA polymerase II complex binding activity and mRNA binding activity. Predicted to be involved in mRNA polyadenylation and termination of RNA polymerase II transcription. Predicted to localize to mRNA cleavage factor complex and mitochondrion. Orthologous to human PCF11 (PCF11 cleavage and polyadenylation factor subunit); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: MODEL
Also known as: cleavage and polyadenylation factor subunit homolog; cleavage and polyadenylation factor subunit homolog (S. cerevisiae) ; LOC361605; PCF11, cleavage and polyadenylation factor subunit, homolog; PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae); pre-mRNA cleavage complex 2 protein Pcf11; RGD1563397; similar to mKIAA0824 protein
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01157,463,014 - 157,494,134 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,468,626 - 157,494,008 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01163,711,941 - 163,738,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41149,474,824 - 149,501,334 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1144,872,077 - 144,903,151 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pcf11
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563397
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.