D1Rat149 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D1Rat149

Symbol: D1Rat149
Previously known as: oxsts6569; R0071-C06; 
RGD ID: 38340
Expected Size: 207 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81182,064,596 - 182,064,803 (+)Marker Load Pipeline
mRatBN7.21172,630,369 - 172,630,576 (+)MAPPERmRatBN7.2
Rnor_6.01187,971,060 - 187,971,266NCBIRnor6.0
Rnor_5.01194,922,120 - 194,922,326UniSTSRnor5.0
RGSC_v3.41176,534,961 - 176,535,167UniSTSRGSC3.4
RGSC_v3.41176,534,960 - 176,535,167RGDRGSC3.4
RGSC_v3.11176,674,207 - 176,674,413RGD
Celera1170,415,072 - 170,415,264UniSTS
RH 3.4 Map11563.31RGD
RH 3.4 Map11563.31UniSTS
RH 2.0 Map11146.9RGD
SHRSP x BN Map186.8799RGD
FHH x ACI Map182.16RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer ACAACCAAGAAGTGGGATGC
Reverse Primer AAAGGCTGGATTCCCAGTTT
 
Template 
TGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTAACCTGTCGTTATGGTTTGGAAATGTCCC
CAAAGGCCTATGTGTTAAAGGCTGGATTCCCAGTTTGTAGTGCCAATGGGAGGCCGCAGAACAG
TTAAAGGGTAGGGTCTGATGGAAGGAAGTTAGGTCATTGAGGCAAGCCATTGAAGGGGATAGTA
AGCCGTGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTG
TGCACGCGCGCGCCACGCATCCCACTTCTTGGTTGTAGAATGCAATGTGTTGACTTGTCACAAG
GGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCT
CACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTANAGCCTGGGGTGCCTAATGAGTG
AGCTAACTCACATTAATTGCGTTGCGCTCATGCCGCTTTCCAGTCGGGAAACTGTC
Strain, Expected Size(s)

ACI/N 190 AVN/Orl 200 BBDP/Rhw 190
BBDR/Rhw 190 BC/CpbU 190 BDIX/Han 208
BDVII/Cub 208 BN-Lx/Cub 208 BN/SsNHsd 208
BP/Cub 214 BUF/Pit 210 COP/OlaHsd 190
DA/PitN 190 DON/Melb 210 F344/Pit 210
FHH/Eur 200 GH/Omr 214 GK/KyoSwe 210
IS/Kyo 214 LE/Mol 190 LEW/Pit 200
LN/Mav 190 LOU/CHan 200 M520/N 214
MHS/Gib 200 MNR/N 200 MNRA/N 200
MNS/Gib 200 MR/Pit 200 NEDH/K 200
NP9 190 ODU/N 214 OKA/Wsl 214
OM/Ztm 190 P5C 190 PVG/Pit 190
SD/Rij 214 SHR/OlaHsd 214 SHRSP/Riv 214
SR/Jr 190 SS/Jr 190 WAG/RijKyo 200
WF/Pit 190 WIST/Nhg 200 WKY/OlaHsd 214
WN/N 216 WTC/Kyo 214


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
7544889LOC102549940uncharacterized LOC1025499401172626577172632763Rat
GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 83 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat

1 to 10 of 83 rows