Tead1 (TEA domain transcription factor 1) - Rat Genome Database
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Gene: Tead1 (TEA domain transcription factor 1) Rattus norvegicus
Analyze
Symbol: Tead1
Name: TEA domain transcription factor 1
RGD ID: 1549742
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including animal organ development; cellular response to retinoic acid; and positive regulation of nitrogen compound metabolic process. Predicted to localize to TEAD-1-YAP complex and nucleoplasm. Human ortholog(s) of this gene implicated in Sveinsson chorioretinal atrophy. Orthologous to human TEAD1 (TEA domain transcription factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: TEA domain family member 1; TEF-1; transcriptional enhancer factor TEF-1
Orthologs:
Homo sapiens (human) : TEAD1 (TEA domain transcription factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Tead1 (TEA domain family member 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tead1 (TEA domain transcription factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TEAD1 (TEA domain transcription factor 1)
Canis lupus familiaris (dog) : TEAD1 (TEA domain transcription factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tead1 (TEA domain transcription factor 1)
Sus scrofa (pig) : TEAD1 (TEA domain transcription factor 1)
Chlorocebus sabaeus (African green monkey) : TEAD1 (TEA domain transcription factor 1)
Heterocephalus glaber (naked mole-rat) : Tead1 (TEA domain transcription factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01177,495,500 - 177,714,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,495,782 - 177,707,061 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01184,473,090 - 184,690,968 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41170,481,601 - 170,696,621 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1164,664,658 - 164,874,391 (+)NCBICelera
Cytogenetic Map1q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:7958896   PMID:11118619   PMID:11306707   PMID:12477932   PMID:12861002   PMID:14762206   PMID:16207754   PMID:17689488   PMID:18332127   PMID:18579750   PMID:18978355   PMID:19004856  
PMID:19324877   PMID:20123905   PMID:20516196   PMID:21385842   PMID:22082260   PMID:24344135   PMID:25796446   PMID:26045994   PMID:26902285   PMID:27288457   PMID:27359056  


Genomics

Comparative Map Data
Tead1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01177,495,500 - 177,714,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,495,782 - 177,707,061 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01184,473,090 - 184,690,968 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41170,481,601 - 170,696,621 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1164,664,658 - 164,874,391 (+)NCBICelera
Cytogenetic Map1q33NCBI
TEAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1112,674,421 - 12,944,737 (+)EnsemblGRCh38hg38GRCh38
GRCh381112,674,421 - 12,944,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371112,695,969 - 12,966,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361112,652,545 - 12,922,875 (+)NCBINCBI36hg18NCBI36
Build 341112,742,300 - 12,922,859NCBI
Celera1112,823,287 - 13,092,362 (+)NCBI
Cytogenetic Map11p15.3NCBI
HuRef1112,376,359 - 12,646,393 (+)NCBIHuRef
CHM1_11112,694,856 - 12,965,213 (+)NCBICHM1_1
Tead1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397112,278,563 - 112,505,991 (+)NCBI
GRCm387112,679,356 - 112,906,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7112,679,318 - 112,906,807 (+)EnsemblGRCm38mm10GRCm38
MGSCv377119,822,834 - 120,050,319 (+)NCBIGRCm37mm9NCBIm37
MGSCv367112,470,774 - 112,691,171 (+)NCBImm8
Celera7112,654,274 - 112,881,298 (+)NCBICelera
Cytogenetic Map7F1NCBI
Tead1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541428,175,543 - 28,333,856 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541428,166,562 - 28,341,275 (+)NCBIChiLan1.0ChiLan1.0
TEAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11112,535,447 - 12,804,052 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1112,624,281 - 12,796,541 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01112,841,564 - 13,111,506 (+)NCBIMhudiblu_PPA_v0panPan3
TEAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2135,566,865 - 35,934,438 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12135,667,862 - 35,935,180 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tead1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365285,607,993 - 5,774,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl246,399,647 - 46,670,615 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1246,396,490 - 46,670,619 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2249,852,052 - 50,007,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEAD1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl151,905,198 - 52,076,909 (-)Ensembl
ChlSab1.1151,897,725 - 52,167,655 (-)NCBI
Tead1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247664,694,337 - 4,935,121 (+)NCBI

Position Markers
D1Rat55  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01184,481,327 - 184,481,458NCBIRnor5.0
Rnor_5.01184,481,328 - 184,481,458NCBIRnor5.0
RGSC_v3.41170,489,843 - 170,489,972UniSTSRGSC3.4
RGSC_v3.41170,489,842 - 170,489,972RGDRGSC3.4
RGSC_v3.11170,609,777 - 170,609,906RGD
Celera1164,672,382 - 164,672,511UniSTS
Cytogenetic Map1q34UniSTS
RH 3.4 Map11322.3UniSTS
RH 3.4 Map11322.3RGD
RH 2.0 Map1854.0RGD
SHRSP x BN Map183.52RGD
FHH x ACI Map180.0199RGD
D1Rat280  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01177,499,817 - 177,499,939NCBIRnor6.0
Rnor_5.01184,477,407 - 184,477,529UniSTSRnor5.0
RGSC_v3.41170,485,919 - 170,486,043RGDRGSC3.4
RGSC_v3.41170,485,920 - 170,486,043UniSTSRGSC3.4
RGSC_v3.11170,605,679 - 170,605,995RGD
Celera1164,668,508 - 164,668,585UniSTS
Cytogenetic Map1q34UniSTS
SHRSP x BN Map183.5599UniSTS
SHRSP x BN Map183.5599RGD
D1Got160  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01177,547,893 - 177,548,096NCBIRnor6.0
Rnor_5.01184,525,433 - 184,525,636UniSTSRnor5.0
RGSC_v3.41170,536,329 - 170,536,533RGDRGSC3.4
RGSC_v3.41170,536,330 - 170,536,533UniSTSRGSC3.4
RGSC_v3.11170,656,264 - 170,656,467RGD
Celera1164,716,634 - 164,716,837UniSTS
Cytogenetic Map1q34UniSTS
RH 3.4 Map11320.1UniSTS
RH 3.4 Map11320.1RGD
RH 2.0 Map1853.7RGD
AU046756  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01177,650,233 - 177,650,434NCBIRnor6.0
Rnor_5.01184,626,409 - 184,626,610UniSTSRnor5.0
RGSC_v3.41170,638,660 - 170,638,861UniSTSRGSC3.4
Celera1164,818,149 - 164,818,350UniSTS
Cytogenetic Map1q34UniSTS
BE107218  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01177,572,943 - 177,573,122NCBIRnor6.0
Rnor_5.01184,549,653 - 184,549,832UniSTSRnor5.0
RGSC_v3.41170,560,665 - 170,560,844UniSTSRGSC3.4
Celera1164,741,081 - 164,741,260UniSTS
Cytogenetic Map1q34UniSTS
RH 3.4 Map11322.3UniSTS
UniSTS:224609  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01177,706,941 - 177,707,132NCBIRnor6.0
Rnor_5.01184,683,117 - 184,683,308UniSTSRnor5.0
RGSC_v3.41170,695,896 - 170,696,087UniSTSRGSC3.4
Celera1164,874,469 - 164,874,660UniSTS
Cytogenetic Map1q34UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)199983293216325819Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1153655976198655976Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1175447029220447029Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1175447029220447029Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1124603592188289386Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1126240667217054291Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1133946489178946489Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1156446196214277437Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)194201400184846632Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1153655976198655976Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1137787261236763528Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)199983293216213510Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)199983293198656062Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1156446196243311614Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1133076978178076978Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1175447162197963658Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)199983293188289386Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1100131562236763528Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1141296374186296374Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1141296374186296374Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1153656062198656062Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779148198585664Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1167394665191883991Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779320219238476Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1130779148199254774Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1153834077232297227Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1156446783188289244Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1133076978184188922Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1130779148199254774Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1122614824201146953Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1108986301219232156Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1161784169219232156Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1108986301238830534Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1108986301219232156Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1167394665219232156Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169219232156Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1161784169219232156Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1161784169219232156Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1130779148199254774Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700233490237Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1167394665238830534Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1177235071208786962Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1169971964214971964Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)194201400197187904Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight as percentage of body weight (CMO:0000141)1166100317188289386Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1137787261236763528Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1167027868212027868Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1175462885220462885Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1154337847215828102Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1156446783189514504Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1166577232211577232Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1106002252202571904Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1133076978178076978Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1134089429179089429Rat
8693608Alc24Alcohol consumption QTL 242.30.74drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1161072673178935582Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1144634295241482368Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:60
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000021020
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 41 12 4 2 4 8 10 51 35 34 11 8
Low 3 2 45 37 17 37 1 23 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001198589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07005039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07005040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07005041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07005042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01007943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY529194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY529195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY529196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY529197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY529198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000021020   ⟹   ENSRNOP00000021020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1177,495,782 - 177,706,863 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090042   ⟹   ENSRNOP00000072311
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1177,569,618 - 177,707,061 (+)Ensembl
RefSeq Acc Id: NM_001198589   ⟹   NP_001185518
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,782 - 177,706,863 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Celera1164,664,658 - 164,874,391 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230052   ⟹   XP_006230114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230053   ⟹   XP_006230115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230054   ⟹   XP_006230116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230055   ⟹   XP_006230117
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230056   ⟹   XP_006230118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230057   ⟹   XP_006230119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230058   ⟹   XP_006230120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,495,500 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006230059   ⟹   XP_006230121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,551,025 - 177,714,795 (+)NCBI
Rnor_5.01184,473,090 - 184,690,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008759767   ⟹   XP_008757989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,560,421 - 177,714,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008759768   ⟹   XP_008757990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,552,273 - 177,714,795 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001185518   ⟸   NM_001198589
- UniProtKB: F1M7P3 (UniProtKB/TrEMBL),   Q6QQU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230114   ⟸   XM_006230052
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006230115   ⟸   XM_006230053
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006230117   ⟸   XM_006230055
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006230119   ⟸   XM_006230057
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006230116   ⟸   XM_006230054
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006230118   ⟸   XM_006230056
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006230120   ⟸   XM_006230058
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006230121   ⟸   XM_006230059
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K2N3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757990   ⟸   XM_008759768
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008757989   ⟸   XM_008759767
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000072311   ⟸   ENSRNOT00000090042
RefSeq Acc Id: ENSRNOP00000021020   ⟸   ENSRNOT00000021020
Protein Domains
TEA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1549742 AgrOrtholog
Ensembl Genes ENSRNOG00000015488 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021020 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000072311 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021020 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000090042 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1610 UniProtKB/TrEMBL
InterPro TEA/ATTS UniProtKB/TrEMBL
  TEA/ATTS_sf UniProtKB/TrEMBL
  TEF UniProtKB/TrEMBL
  YBD UniProtKB/TrEMBL
KEGG Report rno:361630 UniProtKB/TrEMBL
NCBI Gene 361630 ENTREZGENE
Pfam TEA UniProtKB/TrEMBL
  YBD UniProtKB/TrEMBL
PhenoGen Tead1 PhenoGen
PIRSF TEF UniProtKB/TrEMBL
PRINTS TEADOMAIN UniProtKB/TrEMBL
PROSITE TEA_1 UniProtKB/TrEMBL
  TEA_2 UniProtKB/TrEMBL
SMART TEA UniProtKB/TrEMBL
UniGene Rn.148060 ENTREZGENE
  Rn.51807 ENTREZGENE
UniProt A0A0G2K2N3 ENTREZGENE, UniProtKB/TrEMBL
  F1M7P3 ENTREZGENE, UniProtKB/TrEMBL
  Q6QQT9_RAT UniProtKB/TrEMBL
  Q6QQU0_RAT UniProtKB/TrEMBL
  Q6QQU1_RAT UniProtKB/TrEMBL
  Q6QQU2 ENTREZGENE, UniProtKB/TrEMBL
  Q6QQU3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Tead1  TEA domain transcription factor 1  Tead1  TEA domain family member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-15 Tead1  TEA domain family member 1      Symbol and Name status set to provisional 70820 PROVISIONAL