Usp35 (ubiquitin specific peptidase 35) - Rat Genome Database

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Gene: Usp35 (ubiquitin specific peptidase 35) Rattus norvegicus
Analyze
Symbol: Usp35
Name: ubiquitin specific peptidase 35
RGD ID: 1565984
Description: Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in regulation of protein stability. Predicted to be active in cytosol and nucleus. Orthologous to human USP35 (ubiquitin specific peptidase 35); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC308834; RGD1565984; similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35); similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35); ubiquitin carboxyl-terminal hydrolase 35
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,037,428 - 161,061,114 (-)NCBIGRCr8
mRatBN7.21151,626,195 - 151,649,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,626,196 - 151,650,015 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01162,283,866 - 162,307,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,284,777 - 162,300,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01168,490,390 - 168,514,120 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41154,549,248 - 154,565,892 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1149,725,523 - 149,749,267 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14715245  


Genomics

Comparative Map Data
Usp35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,037,428 - 161,061,114 (-)NCBIGRCr8
mRatBN7.21151,626,195 - 151,649,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,626,196 - 151,650,015 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01162,283,866 - 162,307,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,284,777 - 162,300,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01168,490,390 - 168,514,120 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41154,549,248 - 154,565,892 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1149,725,523 - 149,749,267 (-)NCBICelera
Cytogenetic Map1q32NCBI
USP35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381178,188,919 - 78,237,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1178,188,812 - 78,215,232 (+)EnsemblGRCh38hg38GRCh38
GRCh371177,899,965 - 77,926,278 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,577,606 - 77,603,401 (+)NCBINCBI36Build 36hg18NCBI36
Celera1175,208,342 - 75,234,241 (+)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1174,197,805 - 74,244,614 (+)NCBIHuRef
CHM1_11177,783,021 - 77,808,919 (+)NCBICHM1_1
T2T-CHM13v2.01178,122,182 - 78,166,945 (+)NCBIT2T-CHM13v2.0
Usp35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39796,958,610 - 96,981,502 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl796,958,587 - 96,981,227 (-)EnsemblGRCm39 Ensembl
GRCm38797,309,403 - 97,332,308 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl797,309,380 - 97,332,020 (-)EnsemblGRCm38mm10GRCm38
MGSCv377104,457,890 - 104,474,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36787,052,626 - 87,068,257 (-)NCBIMGSCv36mm8
MGSCv36797,185,445 - 97,201,156 (-)NCBIMGSCv36mm8
Cytogenetic Map7E1NCBI
cM Map753.47NCBI
Usp35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541413,756,488 - 13,772,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541413,755,604 - 13,779,049 (-)NCBIChiLan1.0ChiLan1.0
USP35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2979,121,945 - 79,166,426 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11180,166,051 - 80,210,330 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01173,249,038 - 73,293,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,870,654 - 76,896,850 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,870,654 - 76,896,841 (+)Ensemblpanpan1.1panPan2
USP35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12120,607,504 - 20,686,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2120,607,491 - 20,654,640 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2120,502,337 - 20,581,046 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02120,810,926 - 20,889,672 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2120,810,926 - 20,858,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12120,586,891 - 20,640,008 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02120,802,579 - 20,855,712 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02120,726,713 - 20,779,864 (-)NCBIUU_Cfam_GSD_1.0
Usp35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494765,150,268 - 65,174,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364986,756,586 - 6,772,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364986,750,349 - 6,773,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl912,585,955 - 12,662,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1912,586,028 - 12,662,958 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2913,866,124 - 13,884,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,394,500 - 69,419,577 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,402,028 - 69,418,630 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604356,326,556 - 56,351,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,199,188 - 1,214,498 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,192,618 - 1,215,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:99
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000031161
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1131179947176179947Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)1137611478182611478Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1153679879198679879Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1132760429191848948Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1153679879205813246Rat
8694166Bw147Body weight QTL 1476.830.001body mass (VT:0001259)body weight gain (CMO:0000420)1153788989198788989Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1142582336182383862Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1159894717207261263Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1141173126169168317Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1155359438194575574Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1140833106185833106Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131243790176243790Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1132760429191848948Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1153680016182383862Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1153680016183564652Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436178317588Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
1576310Schws2Schwannoma susceptibility QTL 20.029nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1153788989198788989Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436180021436Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760429191190115Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1140915717185915717Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1132760429191848948Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
7411599Foco11Food consumption QTL 1118.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1153788989198788989Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat

Markers in Region
RH139574  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,626,317 - 151,626,535 (+)MAPPERmRatBN7.2
Rnor_6.01162,283,989 - 162,284,206NCBIRnor6.0
Rnor_5.01168,490,513 - 168,490,730UniSTSRnor5.0
RGSC_v3.41154,549,366 - 154,549,583UniSTSRGSC3.4
Celera1149,725,646 - 149,725,863UniSTS
RH 3.4 Map11150.7UniSTS
Cytogenetic Map1q32UniSTS
RH140406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,626,317 - 151,626,561 (+)MAPPERmRatBN7.2
Rnor_6.01162,283,989 - 162,284,232NCBIRnor6.0
Rnor_5.01168,490,513 - 168,490,756UniSTSRnor5.0
RGSC_v3.41154,549,366 - 154,549,609UniSTSRGSC3.4
Celera1149,725,646 - 149,725,889UniSTS
Cytogenetic Map1q32UniSTS
UniSTS:235713  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81161,037,512 - 161,037,733 (+)Marker Load Pipeline
mRatBN7.21151,626,280 - 151,626,500 (+)MAPPERmRatBN7.2
Rnor_6.01162,283,952 - 162,284,171NCBIRnor6.0
Rnor_5.01168,490,476 - 168,490,695UniSTSRnor5.0
RGSC_v3.41154,549,329 - 154,549,548UniSTSRGSC3.4
Celera1149,725,609 - 149,725,828UniSTS
Cytogenetic Map1q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001064027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031161   ⟹   ENSRNOP00000038242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,626,196 - 151,650,015 (-)Ensembl
Rnor_6.0 Ensembl1162,284,777 - 162,300,515 (-)Ensembl
RefSeq Acc Id: NM_001427809   ⟹   NP_001414738
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,037,428 - 161,061,114 (-)NCBI
RefSeq Acc Id: XM_039101069   ⟹   XP_038956997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,053,249 (-)NCBI
mRatBN7.21151,626,195 - 151,642,067 (-)NCBI
RefSeq Acc Id: XM_039101071   ⟹   XP_038956999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,805 (-)NCBI
mRatBN7.21151,626,195 - 151,634,692 (-)NCBI
RefSeq Acc Id: XM_039101072   ⟹   XP_038957000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
mRatBN7.21151,626,195 - 151,634,691 (-)NCBI
RefSeq Acc Id: XM_039101073   ⟹   XP_038957001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,044,824 (-)NCBI
mRatBN7.21151,626,195 - 151,633,589 (-)NCBI
RefSeq Acc Id: XM_039101074   ⟹   XP_038957002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
mRatBN7.21151,626,195 - 151,634,691 (-)NCBI
RefSeq Acc Id: XM_039101075   ⟹   XP_038957003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
mRatBN7.21151,626,195 - 151,634,691 (-)NCBI
RefSeq Acc Id: XM_039101076   ⟹   XP_038957004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
mRatBN7.21151,626,195 - 151,634,691 (-)NCBI
RefSeq Acc Id: XM_039101079   ⟹   XP_038957007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
mRatBN7.21151,626,195 - 151,634,691 (-)NCBI
RefSeq Acc Id: XM_063262759   ⟹   XP_063118829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,805 (-)NCBI
RefSeq Acc Id: XM_063262760   ⟹   XP_063118830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,045,221 (-)NCBI
RefSeq Acc Id: XM_063262767   ⟹   XP_063118837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
RefSeq Acc Id: XM_063262768   ⟹   XP_063118838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,045,221 (-)NCBI
RefSeq Acc Id: XM_063262769   ⟹   XP_063118839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
RefSeq Acc Id: XM_063262772   ⟹   XP_063118842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,804 (-)NCBI
RefSeq Acc Id: XM_063262773   ⟹   XP_063118843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81161,038,077 - 161,047,991 (-)NCBI
Ensembl Acc Id: ENSRNOP00000038242   ⟸   ENSRNOT00000031161
RefSeq Acc Id: XP_038956997   ⟸   XM_039101069
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956999   ⟸   XM_039101071
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038957004   ⟸   XM_039101076
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957002   ⟸   XM_039101074
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957000   ⟸   XM_039101072
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957007   ⟸   XM_039101079
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957003   ⟸   XM_039101075
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957001   ⟸   XM_039101073
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001414738   ⟸   NM_001427809
- UniProtKB: F1M8S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118843   ⟸   XM_063262773
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118829   ⟸   XM_063262759
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118839   ⟸   XM_063262769
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118842   ⟸   XM_063262772
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118837   ⟸   XM_063262767
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118830   ⟸   XM_063262760
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118838   ⟸   XM_063262768
- Peptide Label: isoform X3
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8S4-F1-model_v2 AlphaFold F1M8S4 1-1007 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565984 AgrOrtholog
BioCyc Gene G2FUF-58453 BioCyc
Ensembl Genes ENSRNOG00000024961 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031161.6 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19ubi-hydrolase_C_CS UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  UCH/PAN2 UniProtKB/TrEMBL
  Usp38-like_N UniProtKB/TrEMBL
NCBI Gene 308834 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 35 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
  Usp38-like_N UniProtKB/TrEMBL
PhenoGen Usp35 PhenoGen
PROSITE UCH_2_1 UniProtKB/TrEMBL
  UCH_2_2 UniProtKB/TrEMBL
  UCH_2_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024961 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt F1M8S4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Usp35  ubiquitin specific peptidase 35  RGD1565984_predicted  similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-10 RGD1565984_predicted  similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (predicted)    similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1565984_predicted  similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35) (predicted)  LOC308834  similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC308834  similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35)      Symbol and Name status set to provisional 70820 PROVISIONAL