Usp35 (ubiquitin specific peptidase 35) - Rat Genome Database

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Gene: Usp35 (ubiquitin specific peptidase 35) Ictidomys tridecemlineatus
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Symbol: Usp35
Name: ubiquitin specific peptidase 35
RGD ID: 12505985
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); INVOLVED IN protein deubiquitination (inferred); proteolysis (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 35; ubiquitin specific peptidase 35, transcript variant X1; ubiquitin specific peptidase 35, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494765,150,268 - 65,174,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364986,756,586 - 6,772,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364986,750,349 - 6,773,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp35Squirrelintellectual disability  ISOUSP35 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp35Squirrelprotein deubiquitination involved_inIEAInterPro:IPR001394150520179 InterProGO_REF:0000002
Usp35Squirrelprotein deubiquitination involved_inIEAPANTHER:PTN002364637150520179 TreeGrafterGO_REF:0000118
Usp35Squirrelproteolysis involved_inIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp35Squirrelcytosol located_inIEAPANTHER:PTN002364637150520179 TreeGrafterGO_REF:0000118
Usp35Squirrelnucleus located_inIEAPANTHER:PTN002364637150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp35Squirrelcysteine-type deubiquitinase activity enablesIEAUniProtKB:Q9P2H5 and ensembl:ENSP00000431876150520179 EnsemblGO_REF:0000107
Usp35Squirrelcysteine-type deubiquitinase activity enablesIEAPANTHER:PTN002364637150520179 TreeGrafterGO_REF:0000118
Usp35Squirrelcysteine-type deubiquitinase activity enablesIEAInterPro:IPR001394 and InterPro:IPR018200150520179 InterProGO_REF:0000002
Usp35Squirrelcysteine-type peptidase activity enablesIEAUniProtKB-KW:KW-0788150520179 UniProtGO_REF:0000043
Usp35Squirrelprotein binding enablesISOUniProtKB:O760249068941 PMID:32814053IntActPMID:32814053

PMID:22301074   PMID:30032202  



Usp35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494765,150,268 - 65,174,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364986,756,586 - 6,772,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364986,750,349 - 6,773,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381178,188,919 - 78,237,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1178,188,812 - 78,215,232 (+)EnsemblGRCh38hg38GRCh38
GRCh371177,899,965 - 77,926,278 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,577,606 - 77,603,401 (+)NCBINCBI36Build 36hg18NCBI36
Celera1175,208,342 - 75,234,241 (+)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1174,197,805 - 74,244,614 (+)NCBIHuRef
CHM1_11177,783,021 - 77,808,919 (+)NCBICHM1_1
T2T-CHM13v2.01178,122,182 - 78,166,945 (+)NCBIT2T-CHM13v2.0
Usp35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39796,958,610 - 96,981,502 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl796,958,587 - 96,981,227 (-)EnsemblGRCm39 Ensembl
GRCm38797,309,403 - 97,332,308 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl797,309,380 - 97,332,020 (-)EnsemblGRCm38mm10GRCm38
MGSCv377104,457,890 - 104,474,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36787,052,626 - 87,068,257 (-)NCBIMGSCv36mm8
MGSCv36797,185,445 - 97,201,156 (-)NCBIMGSCv36mm8
Cytogenetic Map7E1NCBI
cM Map753.47NCBI
Usp35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,037,428 - 161,061,114 (-)NCBIGRCr8
mRatBN7.21151,626,195 - 151,649,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,626,196 - 151,650,015 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01162,283,866 - 162,307,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,284,777 - 162,300,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01168,490,390 - 168,514,120 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41154,549,248 - 154,565,892 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1149,725,523 - 149,749,267 (-)NCBICelera
Cytogenetic Map1q32NCBI
Usp35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541413,756,488 - 13,772,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541413,755,604 - 13,779,049 (-)NCBIChiLan1.0ChiLan1.0
USP35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2979,121,945 - 79,166,426 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11180,166,051 - 80,210,330 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01173,249,038 - 73,293,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,870,654 - 76,896,850 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,870,654 - 76,896,841 (+)Ensemblpanpan1.1panPan2
USP35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12120,607,504 - 20,686,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2120,607,491 - 20,654,640 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2120,502,337 - 20,581,046 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02120,810,926 - 20,889,672 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2120,810,926 - 20,858,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12120,586,891 - 20,640,008 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02120,802,579 - 20,855,712 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02120,726,713 - 20,779,864 (-)NCBIUU_Cfam_GSD_1.0
USP35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl912,585,955 - 12,662,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1912,586,028 - 12,662,958 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2913,866,124 - 13,884,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,394,500 - 69,419,577 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,402,028 - 69,418,630 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604356,326,556 - 56,351,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,199,188 - 1,214,498 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,192,618 - 1,215,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Ensembl Acc Id: ENSSTOT00000019681   ⟹   ENSSTOP00000022107
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364986,756,586 - 6,772,879 (+)Ensembl
RefSeq Acc Id: XM_021725129   ⟹   XP_021580804
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494765,150,726 - 65,174,286 (+)NCBI
SpeTri2.0NW_0049364986,750,349 - 6,773,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725130   ⟹   XP_021580805
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494765,150,726 - 65,174,286 (+)NCBI
SpeTri2.0NW_0049364986,750,349 - 6,773,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284994   ⟹   XP_040140928
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494765,150,268 - 65,174,286 (+)NCBI
RefSeq Acc Id: XM_040284995   ⟹   XP_040140929
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494765,151,113 - 65,174,286 (+)NCBI
Protein RefSeqs XP_021580804 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580805 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140928 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140929 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022107.2
GenBank Protein KAG3286224 (Get FASTA)   NCBI Sequence Viewer  
  KAG3286225 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021580805   ⟸   XM_021725130
- UniProtKB: I3NCL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580804   ⟸   XM_021725129
- UniProtKB: I3NCL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140928   ⟸   XM_040284994
- UniProtKB: I3NCL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140929   ⟸   XM_040284995
- UniProtKB: I3NCL0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000022107   ⟸   ENSSTOT00000019681
USP



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000019692 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019681.2 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  Usp38-like_N UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene Usp35 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 35 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
  Usp38-like_N UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt I3NCL0 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows