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Gene: Usp35 (ubiquitin specific peptidase 35) Ictidomys tridecemlineatus

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Symbol:

Usp35

Name:

ubiquitin specific peptidase 35

RGD ID:

12505985

Description:

ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); INVOLVED IN protein deubiquitination (inferred); proteolysis (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytosol (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin carboxyl-terminal hydrolase 35; ubiquitin specific peptidase 35, transcript variant X1; ubiquitin specific peptidase 35, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	65,150,268 - 65,174,286 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	6,756,586 - 6,772,879 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	6,750,349 - 6,773,889 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Squirrel	intellectual disability		ISO	USP35 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Squirrel	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	150520179		InterPro	GO_REF:0000002
Usp35	Squirrel	protein deubiquitination	involved_in	IEA	PANTHER:PTN002364637	150520179		TreeGrafter	GO_REF:0000118
Usp35	Squirrel	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Squirrel	cytosol	located_in	IEA	PANTHER:PTN002364637	150520179		TreeGrafter	GO_REF:0000118
Usp35	Squirrel	nucleus	located_in	IEA	PANTHER:PTN002364637	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q9P2H5 and ensembl:ENSP00000431876	150520179		Ensembl	GO_REF:0000107
Usp35	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	PANTHER:PTN002364637	150520179		TreeGrafter	GO_REF:0000118
Usp35	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394 and InterPro:IPR018200	150520179		InterPro	GO_REF:0000002
Usp35	Squirrel	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	150520179		UniProt	GO_REF:0000043
Usp35	Squirrel	protein binding	enables	ISO	UniProtKB:O76024	9068941	PMID:32814053	IntAct	PMID:32814053

PMID:22301074	PMID:30032202

Usp35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	65,150,268 - 65,174,286 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	6,756,586 - 6,772,879 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	6,750,349 - 6,773,889 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP35
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	78,188,919 - 78,237,219 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	78,188,812 - 78,215,232 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	77,899,965 - 77,926,278 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	77,577,606 - 77,603,401 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	75,208,342 - 75,234,241 (+)	NCBI		Celera
Cytogenetic Map	11	q14.1	NCBI
HuRef	11	74,197,805 - 74,244,614 (+)	NCBI		HuRef
CHM1_1	11	77,783,021 - 77,808,919 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	78,122,182 - 78,166,945 (+)	NCBI		T2T-CHM13v2.0

Usp35
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	96,958,610 - 96,981,502 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	96,958,587 - 96,981,227 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	97,309,403 - 97,332,308 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	97,309,380 - 97,332,020 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	104,457,890 - 104,474,474 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	87,052,626 - 87,068,257 (-)	NCBI		MGSCv36	mm8
MGSCv36	7	97,185,445 - 97,201,156 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	7	E1	NCBI
cM Map	7	53.47	NCBI

Usp35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	161,037,428 - 161,061,114 (-)	NCBI		GRCr8
mRatBN7.2	1	151,626,195 - 151,649,926 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	151,626,196 - 151,650,015 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	162,283,866 - 162,307,610 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	162,284,777 - 162,300,515 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	168,490,390 - 168,514,120 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	154,549,248 - 154,565,892 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	149,725,523 - 149,749,267 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

Usp35
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	13,756,488 - 13,772,052 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	13,755,604 - 13,779,049 (-)	NCBI	ChiLan1.0	ChiLan1.0

USP35
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	79,121,945 - 79,166,426 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	80,166,051 - 80,210,330 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	73,249,038 - 73,293,063 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	76,870,654 - 76,896,850 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	76,870,654 - 76,896,841 (+)	Ensembl	panpan1.1		panPan2

USP35
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	20,607,504 - 20,686,215 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	20,607,491 - 20,654,640 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	20,502,337 - 20,581,046 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	20,810,926 - 20,889,672 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	20,810,926 - 20,858,650 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	20,586,891 - 20,640,008 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	20,802,579 - 20,855,712 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	20,726,713 - 20,779,864 (-)	NCBI		UU_Cfam_GSD_1.0

USP35
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	12,585,955 - 12,662,955 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	12,586,028 - 12,662,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	13,866,124 - 13,884,923 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP35
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	69,394,500 - 69,419,577 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	69,402,028 - 69,418,630 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	56,326,556 - 56,351,635 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp35
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624863	1,199,188 - 1,214,498 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624863	1,192,618 - 1,215,357 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021725129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000019681 ⟹ ENSSTOP00000022107

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936498	6,756,586 - 6,772,879 (+)	Ensembl

RefSeq Acc Id:

XM_021725129 ⟹ XP_021580804

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	65,150,726 - 65,174,286 (+)	NCBI
SpeTri2.0	NW_004936498	6,750,349 - 6,773,889 (+)	NCBI

Sequence:

show sequence

GGCTCGCGGGGTGGCCCCCGCTCGGCTCCGCCCTTTTTCCCGCACCTCGCCCCTCCCCCCGCTTCGTCCCGCAGCCCCGGGGCCGCGCCGCAGAGTCGGGCTGCCCGGGTCCATACAGGGTAGTGCAG
AGCTGGGTGGGAAGATTGGACTTTGCAGTGGCTGCAGCATCCTTGCGGTCTGGGACCTGGCGGAGGGCGACCCCACCCTGGGGGGAGTAGAGGACCCGCCCTGACCTAGCTTGGCCCAGCCTAGTCCT
GCCCGGCCTGAGCACCCCGCCCAGGAGCCGGTTCTGAGCTAGGCCGTCATGGACAAGATCCTGGAGGCGGTGGTGACCTCGTCATACCCTGCAAGCGTGAAGCAAGGGCTGGTGCGGCGCGTCCTGGA
GGCGGCACGGCAGCCACTGGAGAGGGATCAGTGCCTGGCCCTGCTGGCCCTGGGCGCGCGCCTCTATGTGGGAGGCGCCGACGAGCTGCCACGCCGCGTGGGCTGTCAGCTGCTGCACGTGGCCGGCC
GCCATCACCCCGACGTCTTCGCCGAGTTCTTCAGCGCGCGCCGCGTGCTGCGCCTGTTGCAGGGTGGCGCGGGCCCGCCGGGTGCCCGCGCGCTGGCCTGTGTGCAGCTGGGCCTGCAGCTGCTGCCC
GAGGGGCCCGCGGCTGAGGAGGTGTTCGCGCTGCTGCGGCGCGAGGTGCTGCGCACCGTGTGTGAGCGCCCGGGGCCCGCCGCCTGCGCGCAAGTGGCCCGGCTGCTGGCGCGGCACCCGCGCTGCGT
GCCCGACGGCCCGCACCGCCTGCTCTTCTGCCAGCAGTTGGTGCGCTGCCTCGGCCGCTTCCGCTGCCCCGCGGAGGGCGAGGAGGGAGCGGTGGAGTTCCTGGAGCAGGCCCAGCAGGTGAGCGGGC
TCCTGGCACAGCTGTGGCGTGCGCAGCCTGCCGCCATCCTACCCTGCCTCAAGGAGCTGTTTGCAGTTATCTCCTGCACAGAGGAGGAGCCGCCATCTAGCGCCCTGGCCAGTGTGGTCCAGCACCTC
CCCTTGGAGCTCATGGATGGTGTGGTCCGGAACCTCAGCAATGATGACAGTGTGACGGACTCCCAGATGCTGACTGCTATCAGCAGGATGATCGACTGGGTGTCCTGGCCCTTGGGGAAGAACATTGA
CAAGTGGATCATTGCACTGCTGAAGGGCCTGGCCGCCGTGAAGAAGTTCAGCATCTTGATCGAGGTTTCACTTGCCAAAATCGAGAAGGTCTTCTCCAAGCTGCTGTACCCCATTGTCCGGGGAGCCG
CCTTGTCTGTCCTCAGGTACATGCTCCTGACTTTCCAGCATTCCCACGAGGCCTTCCACCTGCTTCTCCCTCACATCCCCCCCATGGTGACCTCTCTGGTCAAGGAGGACTCGAACTCAGGGACCAGC
TGCCTGGAGCAGCTGGCAGAGCTGGTCCACTGCATGGTGTTCAGGTTCCCGGGATTCCCAGACCTGTATGAGCCTGTCATGGAGGCCATCAAGGACCTCCACGTTCCCAATGAGGACCGCATCAAGCA
GCTGCTGGGGCAGGATGCCTGGACCTCGCAGAAGAGTGAGCTGGCTGGCTTCTACCCCCGGCTCATGGCCAAGTCAGACACGGGCAAGATTGGTTTAATCAACCTGGGAAACACGTGCTACGTGAACA
GCATCCTCCAGGCCTTGTTCATGGCGTCTGACTTTCGACACTGTGTGCTCCGCCTGACTGAGAACAACTCGCAGCCCTTGATGACCAAGCTGCAGTGGCTCTTTGCCTTCTTGGAGCACAGCCAGAGG
CCGGCGATTTCCCCTGAGAACTTCCTCTCTGCGTCCTGGACACCCTGGTTCAGCCCTGGCACCCAGCAGGACTGTTCGGAGTACCTAAAGTACCTGCTGGATCGGCTGCATGAAGAAGAGAAAACCGG
GACGCGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTACCCTCCCCGCCCGAGGAGCCCCCTAGCCCCAGCTCAACCTCTGTGGAGAAAATGTTTGGAGGCAAGATTGTGACCCGGATATGCTGCCTCC
ACTGCCTCAATGTCTCCTCCCGGGAGGAGGCCTTCACGGACCTCTCTCTTGCCTTCCCTCCTCCCGAGCGCTGTCGCCGGCGCCGCCTGGGCTCGGTGATGCTCCCAGCAGAAGATGTCGGAGCCCCG
GTTCCCAGCAGGGCGGGTCCCCGGAGGCAAAGGAAACACTGCATCACTGGGGACGCACCTCCCGCCGTGCTGGACATCGGAGCCCTGGGATCCCCGGGAGCTGGTGGGCAGAGTGGCCGGGAGGAGAA
GGCGGAGAGGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGAGAAGGAGGAGGAGAAGGAGAAGGAGGCCGATCCCGAGGAGAAGGAGGAGGACAACTTGGGACCCGGGAGCCACAGGGAT
CCCGCCCCCGCCCGGGAGCCCACGTGCGGCCCCGTCCCCGAGGGCTCCCGCTCTGTCCTGGACCTCGTCAACTACTTCCTGTCCCCCGAGAGGCTGACCGCAGAGAACCGCTACTACTGCGAGTCGTG
CGCCTCCCTGCAGGACGCCGAGAAGGTGGTGGAGCTGAGCCAGGGCCCGCGCTACCTCGTGCTGACGCTGCTGCGCTTCTCCTTCGACCTGCGCACCATGCGGCGCCGCAAGATCCTGGACGACGTCA
CCATTCCCCTCCTGCTCCGCCTGCCGCTGGCTGGTGGCCAGGGCCAGGCCTATGACCTGTGCAGTGTTGTGGTGCACTCCGGGGTGTCCTCAGAGAGTGGCCACTACTACTGCTACGCCCGCGAGGGC
GCTGCCCGCCCGGCCCCGCCTCTGGGAACTGCTGACAGGCCGGAGCCTGAGAACCAGTGGTACCTGTTCAATGACACGCGGGTGTCCTTCTCCTCCTTCGAGTCTGTCAGCAACGTCACCTCCTTCTT
CCCCAAGGACACAGCCTATGTGCTCTTTTACCGCCAGCGGCCTGGAGAGGTGCCTGAGGCTGAACCGGGCTCTCCCAGAGCCCGAGCAGAGCCCACCCTCCACAAGGACTTGATGGAAGCTATTTCCA
AAGACAACATCCTCTACCTGCAGGAGCAGGAGAAGGAGGCCCGCAGCAGGGCGGCCTACATCTCAGCCCTCCCTGCCTCTCCGCACTGGGGCAGGGGCTTTGATGAAGACAAGGATGAGGATGAAGGC
TCTCCAGGGGGCTGCAACCCTGCAGGTGGCAATGGAGGTGACTTCCACAGACTGGTCTTCTGAAGTGAAACTTTCCCCAGCCTGCTCCTTCGTGCGGGGGCACCACAGCCAACCTCAGGGGGCCTCAA
GCCCCTCCTTCTGGGAGCCAGGTGGGGTCTGAGGGTGGTTGAAGCCCAGGGCTGAAGTGGGCCCTTCCAAGGGCAGGAAGGATGGACAGGGAGCTTCTAGGATGTTGGCCCTGAGCTGAAGGGTACGA
GAAACCCAAATATGGAGGGGATCCCTGACCCCCTTAAACTGGGCCCTCAGACCCTGGTACTGGGATCAGTTCCATTAAGATTTTACACCCAAGTGTCCTGGTTCACTTGGAGCAGCTTGGATGGACGC
ACGCTGGGCTTTGCCTCCCCCACTTCCCTGCAGGCCCCATCCTAGAGACCCTGAGCTGGCCCTGGAGCCAGGGCCGAGCTTCTGCTCAAGCGTCCTGCCGTCCAGTAGCACTTAGCACTTCTCTTCCA
GCTCTTGCTCAATAAGATAAAAAGCACAGTGGGATCCAAGCTCTTGCACCAAGAAAGGGGCTGCTTGTTGCCTCTGGCTGCCTGCCTTGTTTCTCTAAGGGGTTTCAGAGGTGAGGCTTGGGGTGCCT
TTGGGGGACACCTGCACTGACTGTACTTTTTTGAGGAAAGTAGATGGCAAAGCAGCATGGCACAGGATCAGAAGGATCTCCCTGGCCTCACTCCTTTAGCTGTCCCCCTATACAGCACTAAAGGAGAG
GAGAGACCCTCCCCCAGTGTCCCCCAGCCTGCCTCAGTGCCTGTGATGCCACCGTTTGTATCTCCCTCCTGGTTAAGGCTGAGAATTCTTATTTTATTGCAAAGATGTTTTCTTGTCAGGAAGCCATC
AACAGTTCCGAGGAAGCTGGCTGGCTCGGCTCCTCGGATCAGCGGGCCACGTGAGGGCTGGGCGGGGGGCACTGTGAAGCAGACAGGCCTCACTGTGCCCTGACGCTGCTCTAGCCCCTTCTAAATGG
AGACAAATGATTCATGTTCTCAAACAGGAATAAAACTAGGTTCTCTGAA

hide sequence

RefSeq Acc Id:

XM_021725130 ⟹ XP_021580805

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	65,150,726 - 65,174,286 (+)	NCBI
SpeTri2.0	NW_004936498	6,750,349 - 6,773,889 (+)	NCBI

Sequence:

show sequence

GGCTCGCGGGGTGGCCCCCGCTCGGCTCCGCCCTTTTTCCCGCACCTCGCCCCTCCCCCCGCTT
CGTCCCGCAGCCCCGGGGCCGCGCCGCAGAGTCGGGCTGCCCGGGTCCATACAGGGTAGTGCAGAGCTGGGTGGGAAGATTGGACTTTGCAGTGGCTGCAGCATCCTTGCGGTCTGGGACCTGGCGGA
GGGCGACCCCACCCTGGGGGGAGTAGAGGACCCGCCCTGACCTAGCTTGGCCCAGCCTAGTCCTGCCCGGCCTGAGCACCCCGCCCAGGAGCCGGTTCTGAGGTAGGGCCCGCTGAGGTCCGGGAGCT
AGGCCGTCATGGACAAGATCCTGGAGGCGGTGGTGACCTCGTCATACCCTGCAAGCGTGAAGCAAGGGCTGGTGCGGCGCGTCCTGGAGGCGGCACGGCAGCCACTGGAGAGGGATCAGTGCCTGGCC
CTGCTGGCCCTGGGCGCGCGCCTCTATGTGGGAGGCGCCGACGAGCTGCCACGCCGCGTGGGCTGTCAGCTGCTGCACGTGGCCGGCCGCCATCACCCCGACGTCTTCGCCGAGTTCTTCAGCGCGCG
CCGCGTGCTGCGCCTGTTGCAGGGTGGCGCGGGCCCGCCGGGTGCCCGCGCGCTGGCCTGTGTGCAGCTGGGCCTGCAGCTGCTGCCCGAGGGGCCCGCGGCTGAGGAGGTGTTCGCGCTGCTGCGGC
GCGAGGTGCTGCGCACCGTGTGTGAGCGCCCGGGGCCCGCCGCCTGCGCGCAAGTGGCCCGGCTGCTGGCGCGGCACCCGCGCTGCGTGCCCGACGGCCCGCACCGCCTGCTCTTCTGCCAGCAGTTG
GTGCGCTGCCTCGGCCGCTTCCGCTGCCCCGCGGAGGGCGAGGAGGGAGCGGTGGAGTTCCTGGAGCAGGCCCAGCAGGTGAGCGGGCTCCTGGCACAGCTGTGGCGTGCGCAGCCTGCCGCCATCCT
ACCCTGCCTCAAGGAGCTGTTTGCAGTTATCTCCTGCACAGAGGAGGAGCCGCCATCTAGCGCCCTGGCCAGTGTGGTCCAGCACCTCCCCTTGGAGCTCATGGATGGTGTGGTCCGGAACCTCAGCA
ATGATGACAGTGTGACGGACTCCCAGATGCTGACTGCTATCAGCAGGATGATCGACTGGGTGTCCTGGCCCTTGGGGAAGAACATTGACAAGTGGATCATTGCACTGCTGAAGGGCCTGGCCGCCGTG
AAGAAGTTCAGCATCTTGATCGAGGTTTCACTTGCCAAAATCGAGAAGGTCTTCTCCAAGCTGCTGTACCCCATTGTCCGGGGAGCCGCCTTGTCTGTCCTCAGGTACATGCTCCTGACTTTCCAGCA
TTCCCACGAGGCCTTCCACCTGCTTCTCCCTCACATCCCCCCCATGGTGACCTCTCTGGTCAAGGAGGACTCGAACTCAGGGACCAGCTGCCTGGAGCAGCTGGCAGAGCTGGTCCACTGCATGGTGT
TCAGGTTCCCGGGATTCCCAGACCTGTATGAGCCTGTCATGGAGGCCATCAAGGACCTCCACGTTCCCAATGAGGACCGCATCAAGCAGCTGCTGGGGCAGGATGCCTGGACCTCGCAGAAGAGTGAG
CTGGCTGGCTTCTACCCCCGGCTCATGGCCAAGTCAGACACGGGCAAGATTGGTTTAATCAACCTGGGAAACACGTGCTACGTGAACAGCATCCTCCAGGCCTTGTTCATGGCGTCTGACTTTCGACA
CTGTGTGCTCCGCCTGACTGAGAACAACTCGCAGCCCTTGATGACCAAGCTGCAGTGGCTCTTTGCCTTCTTGGAGCACAGCCAGAGGCCGGCGATTTCCCCTGAGAACTTCCTCTCTGCGTCCTGGA
CACCCTGGTTCAGCCCTGGCACCCAGCAGGACTGTTCGGAGTACCTAAAGTACCTGCTGGATCGGCTGCATGAAGAAGAGAAAACCGGGACGCGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTACCC
TCCCCGCCCGAGGAGCCCCCTAGCCCCAGCTCAACCTCTGTGGAGAAAATGTTTGGAGGCAAGATTGTGACCCGGATATGCTGCCTCCACTGCCTCAATGTCTCCTCCCGGGAGGAGGCCTTCACGGA
CCTCTCTCTTGCCTTCCCTCCTCCCGAGCGCTGTCGCCGGCGCCGCCTGGGCTCGGTGATGCTCCCAGCAGAAGATGTCGGAGCCCCGGTTCCCAGCAGGGCGGGTCCCCGGAGGCAAAGGAAACACT
GCATCACTGGGGACGCACCTCCCGCCGTGCTGGACATCGGAGCCCTGGGATCCCCGGGAGCTGGTGGGCAGAGTGGCCGGGAGGAGAAGGCGGAGAGGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAGGAGAAGGAGGAGGAGAAGGAGAAGGAGGCCGATCCCGAGGAGAAGGAGGAGGACAACTTGGGACCCGGGAGCCACAGGGATCCCGCCCCCGCCCGGGAGCCCACGTGCGGCCCCGTCCCCG
AGGGCTCCCGCTCTGTCCTGGACCTCGTCAACTACTTCCTGTCCCCCGAGAGGCTGACCGCAGAGAACCGCTACTACTGCGAGTCGTGCGCCTCCCTGCAGGACGCCGAGAAGGTGGTGGAGCTGAGC
CAGGGCCCGCGCTACCTCGTGCTGACGCTGCTGCGCTTCTCCTTCGACCTGCGCACCATGCGGCGCCGCAAGATCCTGGACGACGTCACCATTCCCCTCCTGCTCCGCCTGCCGCTGGCTGGTGGCCA
GGGCCAGGCCTATGACCTGTGCAGTGTTGTGGTGCACTCCGGGGTGTCCTCAGAGAGTGGCCACTACTACTGCTACGCCCGCGAGGGCGCTGCCCGCCCGGCCCCGCCTCTGGGAACTGCTGACAGGC
CGGAGCCTGAGAACCAGTGGTACCTGTTCAATGACACGCGGGTGTCCTTCTCCTCCTTCGAGTCTGTCAGCAACGTCACCTCCTTCTTCCCCAAGGACACAGCCTATGTGCTCTTTTACCGCCAGCGG
CCTGGAGAGGTGCCTGAGGCTGAACCGGGCTCTCCCAGAGCCCGAGCAGAGCCCACCCTCCACAAGGACTTGATGGAAGCTATTTCCAAAGACAACATCCTCTACCTGCAGGAGCAGGAGAAGGAGGC
CCGCAGCAGGGCGGCCTACATCTCAGCCCTCCCTGCCTCTCCGCACTGGGGCAGGGGCTTTGATGAAGACAAGGATGAGGATGAAGGCTCTCCAGGGGGCTGCAACCCTGCAGGTGGCAATGGAGGTG
ACTTCCACAGACTGGTCTTCTGAAGTGAAACTTTCCCCAGCCTGCTCCTTCGTGCGGGGGCACCACAGCCAACCTCAGGGGGCCTCAAGCCCCTCCTTCTGGGAGCCAGGTGGGGTCTGAGGGTGGTT
GAAGCCCAGGGCTGAAGTGGGCCCTTCCAAGGGCAGGAAGGATGGACAGGGAGCTTCTAGGATGTTGGCCCTGAGCTGAAGGGTACGAGAAACCCAAATATGGAGGGGATCCCTGACCCCCTTAAACT
GGGCCCTCAGACCCTGGTACTGGGATCAGTTCCATTAAGATTTTACACCCAAGTGTCCTGGTTCACTTGGAGCAGCTTGGATGGACGCACGCTGGGCTTTGCCTCCCCCACTTCCCTGCAGGCCCCAT
CCTAGAGACCCTGAGCTGGCCCTGGAGCCAGGGCCGAGCTTCTGCTCAAGCGTCCTGCCGTCCAGTAGCACTTAGCACTTCTCTTCCAGCTCTTGCTCAATAAGATAAAAAGCACAGTGGGATCCAAG
CTCTTGCACCAAGAAAGGGGCTGCTTGTTGCCTCTGGCTGCCTGCCTTGTTTCTCTAAGGGGTTTCAGAGGTGAGGCTTGGGGTGCCTTTGGGGGACACCTGCACTGACTGTACTTTTTTGAGGAAAG
TAGATGGCAAAGCAGCATGGCACAGGATCAGAAGGATCTCCCTGGCCTCACTCCTTTAGCTGTCCCCCTATACAGCACTAAAGGAGAGGAGAGACCCTCCCCCAGTGTCCCCCAGCCTGCCTCAGTGC
CTGTGATGCCACCGTTTGTATCTCCCTCCTGGTTAAGGCTGAGAATTCTTATTTTATTGCAAAGATGTTTTCTTGTCAGGAAGCCATCAACAGTTCCGAGGAAGCTGGCTGGCTCGGCTCCTCGGATC
AGCGGGCCACGTGAGGGCTGGGCGGGGGGCACTGTGAAGCAGACAGGCCTCACTGTGCCCTGACGCTGCTCTAGCCCCTTCTAAATGGAGACAAATGATTCATGTTCTCAAACAGGAATAAAACTAGG
TTCTCTGAA

hide sequence

RefSeq Acc Id:

XM_040284994 ⟹ XP_040140928

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	65,150,268 - 65,174,286 (+)	NCBI

RefSeq Acc Id:

XM_040284995 ⟹ XP_040140929

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	65,151,113 - 65,174,286 (+)	NCBI


Protein RefSeqs	XP_021580804	(Get FASTA)	NCBI Sequence Viewer
	XP_021580805	(Get FASTA)	NCBI Sequence Viewer
	XP_040140928	(Get FASTA)	NCBI Sequence Viewer
	XP_040140929	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022107.2
GenBank Protein	KAG3286224	(Get FASTA)	NCBI Sequence Viewer
	KAG3286225	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021580805 ⟸ XM_021725130

- UniProtKB:

I3NCL0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDKILEAVVTSSYPASVKQGLVRRVLEAARQPLERDQCLALLALGARLYVGGADELPRRVGCQLLHVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGARALACVQLGLQLLPEGPAAEEVFALLRREV
LRTVCERPGPAACAQVARLLARHPRCVPDGPHRLLFCQQLVRCLGRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELFAVISCTEEEPPSSALASVVQHLPLELMDGVVRNLSNDD
SVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVRGAALSVLRYMLLTFQHSHEAFHLLLPHIPPMVTSLVKEDSNSGTSCLEQLAELVHCMVFRF
PGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASDFRHCVLRLTENNSQPLMTKLQWLFAFLEHSQRPAISPENFLSASWTPW
FSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSLPSPPEEPPSPSSTSVEKMFGGKIVTRICCLHCLNVSSREEAFTDLSLAFPPPERCRRRRLGSVMLPAEDVGAPVPSRAGPRRQRKHCIT
GDAPPAVLDIGALGSPGAGGQSGREEKAEREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKEEEKEKEADPEEKEEDNLGPGSHRDPAPAREPTCGPVPEGS
RSVLDLVNYFLSPERLTAENRYYCESCASLQDAEKVVELSQGPRYLVLTLLRFSFDLRTMRRRKILDDVTIPLLLRLPLAGGQGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAPPLGTADRPEP
ENQWYLFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYRQRPGEVPEAEPGSPRARAEPTLHKDLMEAISKDNILYLQEQEKEARSRAAYISALPASPHWGRGFDEDKDEDEGSPGGCNPAGGNGGDFH
RLVF

hide sequence

RefSeq Acc Id:

XP_021580804 ⟸ XM_021725129

- UniProtKB:

I3NCL0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDKILEAVVTSSYPASVKQGLVRRVLEAARQPLERDQCLALLALGARLYVGGADELPRRVGCQL
LHVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGARALACVQLGLQLLPEGPAAEEVFALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGPHRLLFCQQLVRCLGRFRCPAEGEEGAVEFLEQA
QQVSGLLAQLWRAQPAAILPCLKELFAVISCTEEEPPSSALASVVQHLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYP
IVRGAALSVLRYMLLTFQHSHEAFHLLLPHIPPMVTSLVKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGN
TCYVNSILQALFMASDFRHCVLRLTENNSQPLMTKLQWLFAFLEHSQRPAISPENFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSLPSPPEEPPSPSSTSVEKMFGGKIVT
RICCLHCLNVSSREEAFTDLSLAFPPPERCRRRRLGSVMLPAEDVGAPVPSRAGPRRQRKHCITGDAPPAVLDIGALGSPGAGGQSGREEKAEREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXEEKEEEKEKEADPEEKEEDNLGPGSHRDPAPAREPTCGPVPEGSRSVLDLVNYFLSPERLTAENRYYCESCASLQDAEKVVELSQGPRYLVLTLLRFSFDLRTMRRRK
ILDDVTIPLLLRLPLAGGQGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAPPLGTADRPEPENQWYLFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYRQRPGEVPEAEPGSPRARAEPTLHKDL
MEAISKDNILYLQEQEKEARSRAAYISALPASPHWGRGFDEDKDEDEGSPGGCNPAGGNGGDFHRLVF

hide sequence

RefSeq Acc Id:	XP_040140928 ⟸ XM_040284994
- UniProtKB:	I3NCL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040140929 ⟸ XM_040284995
- UniProtKB:	I3NCL0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000022107 ⟸ ENSSTOT00000019681

Protein Domains

USP

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000019692	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000019681.2	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/TrEMBL
	Usp38-like_N	UniProtKB/TrEMBL
	USP_CS	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
NCBI Gene	Usp35	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 35	UniProtKB/TrEMBL
Pfam	UCH	UniProtKB/TrEMBL
	Usp38-like_N	UniProtKB/TrEMBL
PROSITE	USP_1	UniProtKB/TrEMBL
	USP_2	UniProtKB/TrEMBL
	USP_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	I3NCL0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar