Bp107 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Bp107 (Blood pressure QTL 107) Rattus norvegicus

Symbol: Bp107
Name: Blood pressure QTL 107
RGD ID: 631654
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81135,021,436 - 180,021,436RGD_MAPPER_PIPELINE
mRatBN7.21125,611,501 - 170,611,501RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01133,076,978 - 178,076,978RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01134,116,233 - 205,161,264RGDRnor5.0
RGSC_v3.41126,938,969 - 185,923,619RGDRGSC3.4
RGSC_v3.11127,017,358 - 186,073,500RGD
Cross Type: Not Available
Strains Crossed: WKY.SHRSP-(D1Rat200-D1Rat216)/Bbb WKY.SHRSP-(D1Rat200-D1Rat216)(Shbg-Atp1b2)/Bbb 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107Rathypertension  IDA 629620 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107Ratincreased systemic arterial blood pressure  IAGP 629620 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107Ratsystolic blood pressure  IDA 629620 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107Ratcontrolled sodium content drinking water  IDA 629620 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107Ratintra-aortic abdominal radiotelemetry  IDA 629620 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107RatWKY.SHRSP-(D1Rat200-D1Rat216)(Shbg-Atp1b2)/Bbb  IEA 629620 RGD 
Bp107RatWKY.SHRSP-(D1Rat200-D1Rat216)/Bbb  IEA 629620 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp107Ratarterial blood pressure trait  IDA 629620 RGD 


#
Reference Title
Reference Citation
1. Interaction between blood pressure quantitative trait loci in rats in which trait variation at chromosome 1 is conditional upon a specific allele at chromosome 10. Monti J, etal., Hum Mol Genet 2003 Feb 15;12(4):435-9.


1 to 20 of 873 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1562967Mctp2multiple C2 and transmembrane domain containing 21125769932126002886Rat
7698364LOC102553828spermatogenesis-associated protein 13-like1126159731126164254Rat
41088730Trnaa-agc79transfer RNA alanine (anticodon AGC) 791126350554126350634Rat
9191646LOC103691162uncharacterized LOC1036911621126477043126482167Rat
1583787Mif-ps8macrophage migration inhibitory factor, pseudogene 81126777227126777631Rat
7634877LOC102554078uncharacterized LOC1025540781126851551126852404Rat
1311983Rgmarepulsive guidance molecule BMP co-receptor a1127128934127172918Rat
1310056Chd2chromodomain helicase DNA binding protein 21127188146127317041Rat
41219816LOC120099853uncharacterized LOC1200998531127336589127338218Rat
40975001LOC120099854uncharacterized LOC1200998541127347845127351622Rat
41143699LOC120099855uncharacterized LOC1200998551127368228127374172Rat
41330022LOC120099856uncharacterized LOC1200998561127413163127418868Rat
1583735Top1-ps1DNA topoisomerase 1, pseudogene 11127423431127432141Rat
9249251LOC103691177histone H2A.Z pseudogene1127473174127484619Rat
1596692Fam174bfamily with sequence similarity 174, member B1127515393127618591Rat
41389607Ipmk-ps1inositol polyphosphate multikinase, pseudogene 11127578732127592426Rat
1583786Rpl26-ps7ribosomal protein L26, pseudogene 71127659594127660098Rat
621843St8sia2ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 21127762573127838017Rat
41343720LOC120097791uncharacterized LOC1200977911127962107127984875Rat
41241885LOC120100156U1 spliceosomal RNA1128006617128006780Rat

1 to 20 of 873 rows
1 to 20 of 948 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10165D1Wox341341164747424164747558Ratregion
10273D1Smu111931168879333168879526Ratregion
11033D1Mgh191971152441635152441834Ratregion
11185D1Wox351541167512327167512481Ratregion
33806D1Mit241091163747690163747797Ratregion
33806D1Mit241091163747690163748014Ratregion
33870D1Mit171891126242834126243023Ratregion
33959D1Mit31371144267353144267490Ratregion
33959D1Mit31371144267353144267916Ratregion
34074D1Mgh81171153136852153136969Ratregion
11473D1Wox381641154820746154820912Ratregion
33640D1Mit211481144314913144315053Ratregion
33640D1Mit211481144314913144315053Ratregion
33770D1Mit121691153920893153921062Ratregion
36007D1Rat361361127453884127454022Ratregion
36023D1Rat381771131763437131763614Ratregion
36075D1Rat491731154464069154464242Ratregion
36105D1Rat511861156677124156677310Ratregion
36227D1Rat461801143011775143011955Ratregion
37208D1Rat1992411134932150134932391Ratregion
1 to 20 of 948 rows

Flank 1: (D1Rat200)
Rat AssemblyChrPosition (strand)Source
GRCr81135,021,436 - 135,021,676 (+)Marker Load Pipeline
mRatBN7.21125,611,501 - 125,611,741 (+)MAPPER
Rnor_6.01133,164,282 - 133,164,521NCBI
Rnor_6.01133,076,978 - 133,077,217NCBI
Rnor_5.01134,116,233 - 134,116,472UniSTS
Rnor_5.01134,203,803 - 134,204,042UniSTS
RGSC_v3.41126,938,969 - 126,939,275RGD
RGSC_v3.41126,939,015 - 126,939,254UniSTS
RGSC_v3.11127,017,358 - 127,017,597RGD
Celera1117,762,193 - 117,762,412UniSTS
RH 3.4 Map1986.1RGD
RH 3.4 Map1986.1UniSTS
RH 2.0 Map1669.6RGD
SHRSP x BN Map161.04RGD
FHH x ACI Map162.2RGD
Flank 2: (D1Rat216)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01205,160,980 - 205,161,264NCBI
RGSC_v3.41185,923,336 - 185,923,619RGD
RGSC_v3.11186,073,217 - 186,073,500RGD
RH 2.0 Map1961.9RGD
SHRSP x BN Map191.4399RGD
FHH x ACI Map186.55RGD
Cytogenetic Map5q22UniSTS


1 to 10 of 107 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
631570Bp94Blood pressure QTL 940.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123479780142990467Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat

1 to 10 of 107 rows


Database
Acc Id
Source(s)
NCBI Gene Bp107

Note Type Note Reference
qtl_general phenotype is dependent upon the epistatic interaction with QTL Bp106 at chromosome 10 629620
qtl_general associates with an increase in systolic blood pressure after salt loading 629620