D1Rat51 Marker Search Result - Rat Genome Database

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Marker: D1Rat51

Symbol: D1Rat51
Previously known as: oxsts6712; R030-D03; R0030-D03; 
RGD ID: 36105
Expected Size: 186 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,677,124 - 156,677,310 (+)MAPPERmRatBN7.2
Rnor_6.01167,394,665 - 167,394,850NCBIRnor6.0
Rnor_5.01173,583,273 - 173,583,458UniSTSRnor5.0
RGSC_v3.41159,782,445 - 159,782,631RGDRGSC3.4
RGSC_v3.41159,782,446 - 159,782,631UniSTSRGSC3.4
RGSC_v3.11159,861,463 - 159,861,648RGD
Celera1154,744,974 - 154,745,153UniSTS
RH 3.4 Map11281.6RGD
RH 3.4 Map11281.6UniSTS
SHRSP x BN Map179.01UniSTS
SHRSP x BN Map179.01RGD
FHH x ACI Map172.14RGD
Cytogenetic Map1q32UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   DA.PVG.1AV1-(D1Rat32-D1Rat51)/Kini  
QTLs:   Bp88   Scort1   Cm32   Kidm15   Lmblg1   Pur17  
Genes:   Stim1  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TTGCCTGAGAGACTGTGCC
Reverse Primer CCCTCAGTTCAAGAGTAACCTCA
 
Strain, Expected Size(s)

AVN/Orl 173 BBDP/Rhw 191 BBDR/Rhw 191
BC/CpbU 179 BDIX/Han 173 BDVII/Cub 173
BN-Lx/Cub 185 BN/SsNHsd 185 BP/Cub 173
BUF/Pit 191 COP/OlaHsd 181 DA/PitN 181
DON/Melb 181 F344/Pit 181 FHH/Eur 167
GH/Omr 179 IS/Kyo 173 LE/Mol 191
LEW/Pit 191 LH/Mav 191 LN/Mav 179
M520/N 181 MNR/N 191 MNRA/N 191
MNS/Gib 191 MR/Pit 191 NEDH/K 191
NP9 179 ODU/N 175 OKA/Wsl 175
OM/Ztm 179 P5C 191 PVG/Pit 173
SD/Rij 189 SHR/OlaHsd 175 SHRSP/Riv 175
SR/Jr 177 SS/Jr 177 WAG/RijKyo 179
WF/Pit 177 WIST/Nhg 187 WKY/OlaHsd 173
WN/N 181 WTC/Kyo 177


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1306831Stim1stromal interaction molecule 11156656246156818777Rat
GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 78 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat

1 to 10 of 78 rows


Database
Acc Id
Source(s)
NCBI Gene 100303014 UniSTS
  361618 UniSTS
  369117 UniSTS
  544473 UniSTS
  544508 UniSTS
  544511 UniSTS
  544529 UniSTS