Hbb (hemoglobin subunit beta) - Rat Genome Database

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Gene: Hbb (hemoglobin subunit beta) Rattus norvegicus
Analyze
Symbol: Hbb
Name: hemoglobin subunit beta
RGD ID: 2783
Description: Enables hemoglobin alpha binding activity and hemoglobin beta binding activity. Contributes to oxygen binding activity. Involved in glutathione metabolic process and oxygen transport. Part of hemoglobin complex. Biomarker of anemia. Human ortholog(s) of this gene implicated in acute chest syndrome; hemolytic anemia (multiple); malaria; polycythemia (multiple); and sickle cell anemia. Orthologous to several human genes including HBB (hemoglobin subunit beta); PARTICIPATES IN malaria pathway; sleeping sickness pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: beta-1-globin; Hemoglobin beta; hemoglobin beta chain complex; hemoglobin beta chain, major-form; hemoglobin beta-1 chain; hemoglobin subunit beta-1; hemoglobin, beta; III beta-1 globin; III beta-2 globin
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21158,250,421 - 158,251,832 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1158,120,200 - 158,252,012 (-)Ensembl
Rnor_6.01168,971,269 - 168,972,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,971,274 - 168,972,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,134,672 - 175,136,083 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,618,782 - 161,620,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11161,666,147 - 161,701,483 (-)NCBI
Celera1156,261,276 - 156,262,687 (-)NCBICelera
RH 3.4 Map11291.6RGD
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,7-dihydropurine-6-thione  (EXP)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
alachlor  (EXP)
aldehydo-D-glucose  (EXP,ISO)
Allylamine  (EXP)
amiodarone  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
benzene  (EXP,ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
Brodifacoum  (EXP)
bromobenzene  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
capsaicin  (ISO)
carbon nanotube  (ISO)
carboplatin  (EXP)
catechol  (ISO)
chloromethylisothiazolinone  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
D-glucose  (EXP,ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibromoacetic acid  (EXP)
diclofenac  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
doxorubicin  (EXP)
entacapone  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
fructose  (EXP)
furans  (ISO)
geraniol  (EXP)
glucose  (EXP,ISO)
hemin  (ISO)
hydralazine  (ISO)
hydrogen sulfide  (ISO)
hydroquinone  (ISO)
ibrutinib  (ISO)
indole-3-methanol  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
kaempferol  (ISO)
ketamine  (EXP)
L-ethionine  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
linalool  (EXP)
linezolid  (EXP)
mercaptopurine  (EXP)
metformin  (EXP)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosomorpholine  (EXP)
naphthalenes  (EXP)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nitroglycerin  (EXP)
omeprazole  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
phenformin  (EXP)
phenol  (ISO)
PhIP  (EXP,ISO)
pioglitazone  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
purine-6-thiol  (EXP)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
streptozocin  (EXP)
styrene oxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
Triptolide  (EXP)
undecane  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zearalenone  (EXP)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Agarwal A, etal., Blood. 2000 Oct 1;96(7):2358-63.
2. Au DM, etal., Gene 1995 Nov 20;165(2):261-6.
3. Bean CJ, etal., Br J Haematol. 2013 Oct;163(2):268-76. doi: 10.1111/bjh.12507. Epub 2013 Aug 16.
4. Blouquit Y, etal., Hemoglobin. 1989;13(5):465-74.
5. Brennan SO, etal., Br J Haematol. 1992 May;81(1):99-103.
6. Chang JC and Kan YW, Trans Assoc Am Physicians. 1982;95:71-8.
7. Colombo G, etal., Blood Cells Mol Dis. 2010 Mar 15;44(3):133-9. Epub 2009 Dec 6.
8. Crkvenjakov R, etal., Hemoglobin 1984;8(6):597-611.
9. de Weinstein BI, etal., Hemoglobin. 2000 May;24(2):149-52.
10. Fischel-Ghodsian N, etal., Am J Hum Genet. 1990 Dec;47(6):1023-4.
11. Fucharoen S, etal., Haematologica. 2003 Oct;88(10):1092-8.
12. Garrick LM, etal., Biochem J. 1975 Jul;149(1):245-58.
13. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. He Y, etal., Acta Neurochir Suppl. 2011;111:133-7. doi: 10.1007/978-3-7091-0693-8_22.
15. Jamsai D, etal., Genomics. 2006 Sep;88(3):309-15. Epub 2006 May 2.
16. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
17. Lokich JJ, etal., J Clin Invest. 1973 Aug;52(8):2060-7.
18. Nagel RL, etal., N Engl J Med. 1976 Jul 15;295(3):125-30.
19. NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. Ohshita Y and Hozumi T, Nucleic Acids Res 1987 Feb 11;15(3):1336.
21. OMIM Disease Annotation Pipeline
22. Online Mendelian Inheritance in Man, OMIM (TM).
23. Orkin SH, etal., Nature. 1982 Apr 15;296(5858):627-31.
24. Pipeline to import KEGG annotations from KEGG into RGD
25. Pirastu M, etal., Proc Natl Acad Sci U S A. 1987 May;84(9):2882-5.
26. RGD automated data pipeline
27. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28. RGD automated import pipeline for gene-chemical interactions
29. Sanna MT, etal., J Biol Chem. 1994 Jul 15;269(28):18338-42.
30. Satoh H, etal., Biochem Biophys Res Commun 1987 Jul 31;146(2):618-24.
31. Shephard F, etal., Mitochondrion. 2014 Jan;14(1):64-72. doi: 10.1016/j.mito.2013.12.001. Epub 2013 Dec 10.
32. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
33. Trecartin RF, etal., J Clin Invest. 1981 Oct;68(4):1012-7.
34. Uehara T, etal., Toxicology. 2011 Apr 11;282(3):139-45. doi: 10.1016/j.tox.2011.01.027. Epub 2011 Feb 4.
35. Yu LH, etal., Clin Genet. 2015 Jul;88(1):56-61. doi: 10.1111/cge.12443. Epub 2014 Jul 26.
Additional References at PubMed
PMID:1512262   PMID:2587229   PMID:2740220   PMID:2748344   PMID:2777087   PMID:8334153   PMID:8524813   PMID:11747442   PMID:12127975   PMID:15157740   PMID:15489334   PMID:15931390  
PMID:17634366   PMID:18465053   PMID:18974585   PMID:19056867   PMID:19479992   PMID:19740759   PMID:21212011   PMID:21805676   PMID:22516433   PMID:22871113   PMID:23376485   PMID:23382103  
PMID:23533145   PMID:25931508   PMID:26316108   PMID:28066926   PMID:31904090   PMID:33253777  


Genomics

Comparative Map Data
Hbb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21158,250,421 - 158,251,832 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1158,120,200 - 158,252,012 (-)Ensembl
Rnor_6.01168,971,269 - 168,972,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,971,274 - 168,972,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,134,672 - 175,136,083 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,618,782 - 161,620,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11161,666,147 - 161,701,483 (-)NCBI
Celera1156,261,276 - 156,262,687 (-)NCBICelera
RH 3.4 Map11291.6RGD
Cytogenetic Map1q32NCBI
HBB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,225,464 - 5,227,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl115,225,464 - 5,229,395 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,246,694 - 5,248,301 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,203,272 - 5,204,877 (-)NCBINCBI36hg18NCBI36
Build 34115,203,271 - 5,204,877NCBI
Celera115,365,367 - 5,366,972 (-)NCBI
Cytogenetic Map11p15.4NCBI
HuRef114,905,869 - 4,907,474 (-)NCBIHuRef
CHM1_1115,245,631 - 5,247,236 (-)NCBICHM1_1
Hbb-b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
MGSCv377110,961,042 - 110,962,437 (-)NCBIGRCm37mm9NCBIm37
MGSCv367103,686,347 - 103,687,744 (-)NCBImm8
Celera796,819,753 - 96,820,010 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
Hbb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541421,188,012 - 21,189,363 (-)NCBIChiLan1.0ChiLan1.0
LOC609402
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,187,535 - 28,188,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2127,904,374 - 27,905,831 (-)NCBI
ROS_Cfam_1.02128,904,801 - 28,906,258 (-)NCBI
ROS_Cfam_1.0 Ensembl2128,896,230 - 28,932,520 (-)Ensembl
UMICH_Zoey_3.12128,248,396 - 28,249,852 (-)NCBI
UNSW_CanFamBas_1.02128,475,491 - 28,476,948 (-)NCBI
UU_Cfam_GSD_1.02128,611,683 - 28,613,353 (-)NCBI

Position Markers
D1Bda30  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,251,317 - 158,251,611 (+)MAPPERmRatBN7.2
mRatBN7.21158,231,101 - 158,231,395 (-)MAPPERmRatBN7.2
Rnor_6.01168,972,166 - 168,972,459NCBIRnor6.0
Rnor_6.01168,945,803 - 168,946,096NCBIRnor6.0
Rnor_5.01175,135,568 - 175,135,862NCBIRnor5.0
Rnor_5.01175,111,208 - 175,111,502NCBIRnor5.0
Rnor_5.01176,575,545 - 176,575,839NCBIRnor5.0
RGSC_v3.41161,597,598 - 161,597,891UniSTSRGSC3.4
RGSC_v3.41161,619,679 - 161,619,972UniSTSRGSC3.4
Celera1156,262,173 - 156,262,466UniSTS
Cytogenetic Map1q22UniSTS
RH94431  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,337,265 - 15,337,360 (+)MAPPERmRatBN7.2
Rnor_6.01015,602,794 - 15,602,888NCBIRnor6.0
Rnor_5.01015,497,889 - 15,497,983UniSTSRnor5.0
RGSC_v3.41015,584,360 - 15,584,454UniSTSRGSC3.4
Celera1015,004,857 - 15,004,951UniSTS
RH 3.4 Map10153.7UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map1q22UniSTS
RH94473  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,251,954 - 158,252,078 (+)MAPPERmRatBN7.2
Rnor_6.01168,972,803 - 168,972,926NCBIRnor6.0
Rnor_5.01175,136,206 - 175,136,329UniSTSRnor5.0
RGSC_v3.41161,620,316 - 161,620,439UniSTSRGSC3.4
Celera1156,262,810 - 156,262,933UniSTS
RH 3.4 Map11291.6UniSTS
Cytogenetic Map1q22UniSTS
BI280228  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,337,287 - 15,337,451 (+)MAPPERmRatBN7.2
Rnor_6.01015,602,816 - 15,602,979NCBIRnor6.0
Rnor_5.01015,497,911 - 15,498,074UniSTSRnor5.0
RGSC_v3.41015,584,382 - 15,584,545UniSTSRGSC3.4
Celera1015,004,879 - 15,005,042UniSTS
RH 3.4 Map10151.86UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map1q22UniSTS
PMC106412P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q22UniSTS
PMC140912P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,299 - 206,487,454NCBIRnor5.0
RGSC_v3.41187,302,963 - 187,303,117UniSTSRGSC3.4
Celera1180,278,860 - 180,279,014UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map1q22UniSTS
PMC153210P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,279 - 206,487,418NCBIRnor5.0
RGSC_v3.41187,302,943 - 187,303,081UniSTSRGSC3.4
Celera1180,278,840 - 180,278,978UniSTS
Cytogenetic Map1q22UniSTS
PMC18810P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,422 - 206,487,559NCBIRnor5.0
RGSC_v3.41187,303,086 - 187,303,222UniSTSRGSC3.4
Celera1180,278,983 - 180,279,119UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS
PMC21968P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,271,995 - 158,272,946 (+)MAPPERmRatBN7.2
mRatBN7.21158,283,058 - 158,283,923 (+)MAPPERmRatBN7.2
Rnor_6.01169,003,907 - 169,004,771NCBIRnor6.0
Rnor_6.01168,992,844 - 168,993,794NCBIRnor6.0
Rnor_5.01175,167,534 - 175,168,398UniSTSRnor5.0
Rnor_5.01175,156,247 - 175,157,197UniSTSRnor5.0
RGSC_v3.41161,640,362 - 161,641,312UniSTSRGSC3.4
RGSC_v3.41161,651,425 - 161,652,289UniSTSRGSC3.4
Celera1156,293,864 - 156,294,728UniSTS
Celera1156,282,801 - 156,283,751UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS
PMC350564P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,427 - 206,487,551NCBIRnor5.0
RGSC_v3.41187,303,091 - 187,303,214UniSTSRGSC3.4
Celera1180,278,988 - 180,279,111UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1156,262,234 - 156,262,291UniSTS
Celera1156,256,379 - 156,256,436UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,243,935 - 158,244,689 (-)MAPPERmRatBN7.2
mRatBN7.21158,218,599 - 158,219,353 (-)MAPPERmRatBN7.2
mRatBN7.21158,237,209 - 158,237,963 (-)MAPPERmRatBN7.2
Rnor_6.01168,964,571 - 168,965,324NCBIRnor6.0
Rnor_6.01168,957,845 - 168,958,598NCBIRnor6.0
Rnor_5.01175,098,998 - 175,099,751UniSTSRnor5.0
Rnor_5.01175,128,184 - 175,128,937UniSTSRnor5.0
Celera1156,255,703 - 156,256,456UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1q32UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1156,261,406 - 156,262,441UniSTS
Celera1156,255,595 - 156,256,586UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642722214537671Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383635Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)1155422851172949803Rat
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1156677124176484451Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:21
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000044783
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 39 42 30 13 25 32 18 14 11
Medium 3 8 29 16 6 16 8 11 36 17 23 8
Low 2 6 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_033234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M17084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M94918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X16417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X67613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000090422   ⟹   ENSRNOP00000070324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1168,971,274 - 168,972,725 (-)Ensembl
RefSeq Acc Id: NM_033234   ⟹   NP_150237
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21158,250,421 - 158,251,832 (-)NCBI
Rnor_6.01168,971,269 - 168,972,680 (-)NCBI
Rnor_5.01175,134,672 - 175,136,083 (-)NCBI
RGSC_v3.41161,618,782 - 161,620,193 (-)RGD
Celera1156,261,276 - 156,262,687 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_150237   ⟸   NM_033234
- UniProtKB: P02091 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070324   ⟸   ENSRNOT00000090422
Protein Domains
GLOBIN

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690275
Promoter ID:EPDNEW_R800
Type:multiple initiation site
Name:Hbb_1
Description:hemoglobin subunit beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01168,972,685 - 168,972,745EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2783 AgrOrtholog
BioCyc Gene G2FUF-58133 BioCyc
Ensembl Genes ENSRNOG00000047098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000058105 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068726 ENTREZGENE
  ENSRNOP00000068875 UniProtKB/TrEMBL
  ENSRNOP00000070324 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087661 UniProtKB/TrEMBL
  ENSRNOT00000089125 ENTREZGENE
  ENSRNOT00000090422 UniProtKB/TrEMBL
Gene3D-CATH 1.10.490.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921704 IMAGE-MGC_LOAD
InterPro Globin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Globin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Globin/Proto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Haemoglobin_b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24440 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72718 IMAGE-MGC_LOAD
NCBI Gene 24440 ENTREZGENE
Pfam Globin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hbb PhenoGen
PRINTS BETAHAEM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GLOBIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46458 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JSW3_RAT UniProtKB/TrEMBL
  A0A0G2JTW9_RAT UniProtKB/TrEMBL
  HBB1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary P33584 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Hbb  hemoglobin subunit beta  Hbb  hemoglobin, beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Hbb  hemoglobin, beta  Hbb  hemoglobin beta chain complex  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Hbb  hemoglobin beta chain complex    Hemoglobin, beta  Name updated 625702 APPROVED
2002-06-10 Hbb  Hemoglobin, beta      Symbol and Name status set to approved 70586 APPROVED