Hbb (hemoglobin subunit beta) - Rat Genome Database

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Gene: Hbb (hemoglobin subunit beta) Rattus norvegicus
Analyze
Symbol: Hbb
Name: hemoglobin subunit beta
RGD ID: 2783
Description: Exhibits hemoglobin alpha binding activity and hemoglobin beta binding activity. Contributes to oxygen binding activity. Involved in glutathione metabolic process and oxygen transport. Localizes to hemoglobin complex. Biomarker of anemia. Human ortholog(s) of this gene implicated in acute chest syndrome; hemolytic anemia (multiple); malaria; polycythemia (multiple); and sickle cell anemia. Orthologous to several human genes including HBB (hemoglobin subunit beta); PARTICIPATES IN malaria pathway; sleeping sickness pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: beta-1-globin; Hemoglobin beta; hemoglobin beta chain complex; hemoglobin beta chain, major-form; hemoglobin beta-1 chain; hemoglobin subunit beta-1; hemoglobin, beta; III beta-1 globin; III beta-2 globin
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21158,250,421 - 158,251,832 (-)NCBI
Rnor_6.0 Ensembl1168,971,274 - 168,972,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01168,971,269 - 168,972,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01175,134,672 - 175,136,083 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,618,782 - 161,620,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11161,666,147 - 161,701,483 (-)NCBI
Celera1156,261,276 - 156,262,687 (-)NCBICelera
RH 3.4 Map11291.6RGD
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,7-dihydropurine-6-thione  (EXP)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
alachlor  (EXP)
aldehydo-D-glucose  (EXP,ISO)
amiodarone  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
benzene  (EXP,ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
Brodifacoum  (EXP)
bromobenzene  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
capsaicin  (ISO)
carbon nanotube  (ISO)
carboplatin  (EXP)
catechol  (ISO)
chloromethylisothiazolinone  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
D-glucose  (EXP,ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibromoacetic acid  (EXP)
diclofenac  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
doxorubicin  (EXP)
entacapone  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
fructose  (EXP)
furans  (ISO)
geraniol  (EXP)
glucose  (EXP,ISO)
hemin  (ISO)
hydralazine  (ISO)
hydrogen sulfide  (ISO)
hydroquinone  (ISO)
ibrutinib  (ISO)
indole-3-methanol  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
kaempferol  (ISO)
ketamine  (EXP)
L-ethionine  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
linalool  (EXP)
linezolid  (EXP)
mercaptopurine  (EXP)
metformin  (EXP)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosomorpholine  (EXP)
naphthalenes  (EXP)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nitroglycerin  (EXP)
omeprazole  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
phenformin  (EXP)
phenol  (ISO)
PhIP  (EXP,ISO)
pioglitazone  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
purine-6-thiol  (EXP)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
streptozocin  (EXP)
styrene oxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
Triptolide  (EXP)
undecane  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zearalenone  (EXP)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Agarwal A, etal., Blood. 2000 Oct 1;96(7):2358-63.
2. Au DM, etal., Gene 1995 Nov 20;165(2):261-6.
3. Bean CJ, etal., Br J Haematol. 2013 Oct;163(2):268-76. doi: 10.1111/bjh.12507. Epub 2013 Aug 16.
4. Blouquit Y, etal., Hemoglobin. 1989;13(5):465-74.
5. Brennan SO, etal., Br J Haematol. 1992 May;81(1):99-103.
6. Chang JC and Kan YW, Trans Assoc Am Physicians. 1982;95:71-8.
7. Colombo G, etal., Blood Cells Mol Dis. 2010 Mar 15;44(3):133-9. Epub 2009 Dec 6.
8. Crkvenjakov R, etal., Hemoglobin 1984;8(6):597-611.
9. de Weinstein BI, etal., Hemoglobin. 2000 May;24(2):149-52.
10. Fischel-Ghodsian N, etal., Am J Hum Genet. 1990 Dec;47(6):1023-4.
11. Fucharoen S, etal., Haematologica. 2003 Oct;88(10):1092-8.
12. Garrick LM, etal., Biochem J. 1975 Jul;149(1):245-58.
13. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. He Y, etal., Acta Neurochir Suppl. 2011;111:133-7. doi: 10.1007/978-3-7091-0693-8_22.
15. Jamsai D, etal., Genomics. 2006 Sep;88(3):309-15. Epub 2006 May 2.
16. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
17. Lokich JJ, etal., J Clin Invest. 1973 Aug;52(8):2060-7.
18. Nagel RL, etal., N Engl J Med. 1976 Jul 15;295(3):125-30.
19. NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. Ohshita Y and Hozumi T, Nucleic Acids Res 1987 Feb 11;15(3):1336.
21. OMIM Disease Annotation Pipeline
22. Online Mendelian Inheritance in Man, OMIM (TM).
23. Orkin SH, etal., Nature. 1982 Apr 15;296(5858):627-31.
24. Pipeline to import KEGG annotations from KEGG into RGD
25. Pirastu M, etal., Proc Natl Acad Sci U S A. 1987 May;84(9):2882-5.
26. RGD automated data pipeline
27. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28. RGD automated import pipeline for gene-chemical interactions
29. Satoh H, etal., Biochem Biophys Res Commun 1987 Jul 31;146(2):618-24.
30. Shephard F, etal., Mitochondrion. 2014 Jan;14(1):64-72. doi: 10.1016/j.mito.2013.12.001. Epub 2013 Dec 10.
31. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
32. Trecartin RF, etal., J Clin Invest. 1981 Oct;68(4):1012-7.
33. Uehara T, etal., Toxicology. 2011 Apr 11;282(3):139-45. doi: 10.1016/j.tox.2011.01.027. Epub 2011 Feb 4.
34. Yu LH, etal., Clin Genet. 2015 Jul;88(1):56-61. doi: 10.1111/cge.12443. Epub 2014 Jul 26.
Additional References at PubMed
PMID:1512262   PMID:2587229   PMID:2740220   PMID:2748344   PMID:2777087   PMID:8334153   PMID:8524813   PMID:11747442   PMID:12127975   PMID:15157740   PMID:15489334   PMID:15931390  
PMID:17634366   PMID:18465053   PMID:18974585   PMID:19056867   PMID:19479992   PMID:19740759   PMID:21212011   PMID:21805676   PMID:22516433   PMID:22871113   PMID:23376485   PMID:23382103  
PMID:23533145   PMID:25931508   PMID:26316108   PMID:28066926   PMID:31904090  


Genomics

Comparative Map Data
Hbb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21158,250,421 - 158,251,832 (-)NCBI
Rnor_6.0 Ensembl1168,971,274 - 168,972,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01168,971,269 - 168,972,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01175,134,672 - 175,136,083 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,618,782 - 161,620,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11161,666,147 - 161,701,483 (-)NCBI
Celera1156,261,276 - 156,262,687 (-)NCBICelera
RH 3.4 Map11291.6RGD
Cytogenetic Map1q32NCBI
HBB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl115,225,464 - 5,229,395 (-)EnsemblGRCh38hg38GRCh38
GRCh38115,225,464 - 5,227,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37115,246,694 - 5,248,301 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,203,272 - 5,204,877 (-)NCBINCBI36hg18NCBI36
Build 34115,203,271 - 5,204,877NCBI
Celera115,365,367 - 5,366,972 (-)NCBI
Cytogenetic Map11p15.4NCBI
HuRef114,905,869 - 4,907,474 (-)NCBIHuRef
CHM1_1115,245,631 - 5,247,236 (-)NCBICHM1_1
Hbb-b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
MGSCv377110,961,042 - 110,962,437 (-)NCBIGRCm37mm9NCBIm37
MGSCv367103,686,347 - 103,687,744 (-)NCBImm8
Celera796,819,753 - 96,820,010 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
Hbb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541421,188,012 - 21,189,363 (-)NCBIChiLan1.0ChiLan1.0
LOC609402
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,187,535 - 28,188,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2127,904,374 - 27,905,831 (-)NCBI
ROS_Cfam_1.02128,904,801 - 28,906,258 (-)NCBI
UMICH_Zoey_3.12128,248,396 - 28,249,852 (-)NCBI
UNSW_CanFamBas_1.02128,475,491 - 28,476,948 (-)NCBI
UU_Cfam_GSD_1.02128,611,683 - 28,613,353 (-)NCBI

Position Markers
D1Bda30  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,251,317 - 158,251,611 (+)MAPPER
mRatBN7.21158,231,101 - 158,231,395 (-)MAPPER
Rnor_6.01168,972,166 - 168,972,459NCBIRnor6.0
Rnor_6.01168,945,803 - 168,946,096NCBIRnor6.0
Rnor_5.01175,135,568 - 175,135,862NCBIRnor5.0
Rnor_5.01175,111,208 - 175,111,502NCBIRnor5.0
Rnor_5.01176,575,545 - 176,575,839NCBIRnor5.0
RGSC_v3.41161,597,598 - 161,597,891UniSTSRGSC3.4
RGSC_v3.41161,619,679 - 161,619,972UniSTSRGSC3.4
Celera1156,262,173 - 156,262,466UniSTS
Cytogenetic Map1q22UniSTS
RH94431  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,337,265 - 15,337,360 (+)MAPPER
Rnor_6.01015,602,794 - 15,602,888NCBIRnor6.0
Rnor_5.01015,497,889 - 15,497,983UniSTSRnor5.0
RGSC_v3.41015,584,360 - 15,584,454UniSTSRGSC3.4
Celera1015,004,857 - 15,004,951UniSTS
RH 3.4 Map10153.7UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map1q22UniSTS
RH94473  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,251,954 - 158,252,078 (+)MAPPER
Rnor_6.01168,972,803 - 168,972,926NCBIRnor6.0
Rnor_5.01175,136,206 - 175,136,329UniSTSRnor5.0
RGSC_v3.41161,620,316 - 161,620,439UniSTSRGSC3.4
Celera1156,262,810 - 156,262,933UniSTS
RH 3.4 Map11291.6UniSTS
Cytogenetic Map1q22UniSTS
BI280228  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,337,287 - 15,337,451 (+)MAPPER
Rnor_6.01015,602,816 - 15,602,979NCBIRnor6.0
Rnor_5.01015,497,911 - 15,498,074UniSTSRnor5.0
RGSC_v3.41015,584,382 - 15,584,545UniSTSRGSC3.4
Celera1015,004,879 - 15,005,042UniSTS
RH 3.4 Map10151.86UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map1q22UniSTS
PMC106412P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q22UniSTS
PMC140912P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,299 - 206,487,454NCBIRnor5.0
RGSC_v3.41187,302,963 - 187,303,117UniSTSRGSC3.4
Celera1180,278,860 - 180,279,014UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map1q22UniSTS
PMC153210P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,279 - 206,487,418NCBIRnor5.0
RGSC_v3.41187,302,943 - 187,303,081UniSTSRGSC3.4
Celera1180,278,840 - 180,278,978UniSTS
Cytogenetic Map1q22UniSTS
PMC18810P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,422 - 206,487,559NCBIRnor5.0
RGSC_v3.41187,303,086 - 187,303,222UniSTSRGSC3.4
Celera1180,278,983 - 180,279,119UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS
PMC21968P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,271,995 - 158,272,946 (+)MAPPER
mRatBN7.21158,283,058 - 158,283,923 (+)MAPPER
Rnor_6.01169,003,907 - 169,004,771NCBIRnor6.0
Rnor_6.01168,992,844 - 168,993,794NCBIRnor6.0
Rnor_5.01175,167,534 - 175,168,398UniSTSRnor5.0
Rnor_5.01175,156,247 - 175,157,197UniSTSRnor5.0
RGSC_v3.41161,640,362 - 161,641,312UniSTSRGSC3.4
RGSC_v3.41161,651,425 - 161,652,289UniSTSRGSC3.4
Celera1156,293,864 - 156,294,728UniSTS
Celera1156,282,801 - 156,283,751UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS
PMC350564P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,427 - 206,487,551NCBIRnor5.0
RGSC_v3.41187,303,091 - 187,303,214UniSTSRGSC3.4
Celera1180,278,988 - 180,279,111UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1156,262,234 - 156,262,291UniSTS
Celera1156,256,379 - 156,256,436UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21158,243,935 - 158,244,689 (-)MAPPER
mRatBN7.21158,218,599 - 158,219,353 (-)MAPPER
mRatBN7.21158,237,209 - 158,237,963 (-)MAPPER
Rnor_6.01168,964,571 - 168,965,324NCBIRnor6.0
Rnor_6.01168,957,845 - 168,958,598NCBIRnor6.0
Rnor_5.01175,098,998 - 175,099,751UniSTSRnor5.0
Rnor_5.01175,128,184 - 175,128,937UniSTSRnor5.0
Celera1156,255,703 - 156,256,456UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1q32UniSTS
Hbb-b1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1156,261,406 - 156,262,441UniSTS
Celera1156,255,595 - 156,256,586UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)199983293216325819Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134993530173445086Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1153655976198655976Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1124603592188289386Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1139523928170246858Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1126240667217054291Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144723107174343537Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1133946489178946489Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1156446196214277437Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)194201400184846632Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1153655976198655976Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1137787261236763528Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)199983293216213510Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)199983293198656062Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1156446196243311614Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1133076978178076978Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)199983293188289386Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149578577169852184Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1100131562236763528Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1141296374186296374Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1141296374186296374Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1153656062198656062Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779148198585664Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1167394665191883991Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779320219238476Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1130779148199254774Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131334152176334152Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1153834077232297227Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131334152176334152Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1156446783188289244Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1133076978184188922Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1130779148199254774Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1122614824201146953Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1108986301219232156Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1161784169219232156Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1108986301238830534Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1108986301219232156Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1167394665219232156Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169219232156Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1161784169219232156Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1161784169219232156Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1130779148199254774Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1167394665238830534Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1124090312169090312Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)194201400197187904Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight as percentage of body weight (CMO:0000141)1166100317188289386Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1129208943174208943Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1137787261236763528Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1167027868212027868Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1154337847215828102Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1156446783189514504Rat
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1166577232169318847Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1166577232211577232Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1106002252202571904Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1133076978178076978Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1134089429179089429Rat
8693608Alc24Alcohol consumption QTL 242.30.74drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1161072673178935582Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1144634295241482368Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:21
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000044783
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 39 42 30 13 25 32 18 14 11
Medium 3 8 29 16 6 16 8 11 36 17 23 8
Low 2 6 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_033234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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  FQ221962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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  FQ222960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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  FQ223745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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  FQ228016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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  FQ228294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
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Reference Sequences
RefSeq Acc Id: ENSRNOT00000090422   ⟹   ENSRNOP00000070324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1168,971,274 - 168,972,725 (-)Ensembl
RefSeq Acc Id: NM_033234   ⟹   NP_150237
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21158,250,421 - 158,251,832 (-)NCBI
Rnor_6.01168,971,269 - 168,972,680 (-)NCBI
Rnor_5.01175,134,672 - 175,136,083 (-)NCBI
RGSC_v3.41161,618,782 - 161,620,193 (-)RGD
Celera1156,261,276 - 156,262,687 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_150237   ⟸   NM_033234
- UniProtKB: P02091 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070324   ⟸   ENSRNOT00000090422
Protein Domains
GLOBIN

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690275
Promoter ID:EPDNEW_R800
Type:multiple initiation site
Name:Hbb_1
Description:hemoglobin subunit beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01168,972,685 - 168,972,745EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin