Gene: Trim3 (tripartite motif-containing 3) Rattus norvegicus
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Symbol: Trim3
Name: tripartite motif-containing 3
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); FOUND IN cytoplasm; glutamatergic synapse; postsynapse; INTERACTS WITH ammonium chloride; bisphenol A; cocaine
AGR Description: Predicted to have ubiquitin protein ligase activity; predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination; localizes to the cytoplasm, glutamatergic synapse, and postsynapse; orthologous to human TRIM3 (tripartite motif containing 3).
Merged Description: Predicted to have ubiquitin protein ligase activity; predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination; localizes to the cytoplasm, glutamatergic synapse, and postsynapse; orthologous to human TRIM3 (tripartite motif containing 3); INTERACTS WITH ammonium chloride; bisphenol A; cocaine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Berp; brain-expressed RING finger protein; ring finger protein 22; Rnf22; tripartite motif protein 3; tripartite motif-containing protein 3
Orthologs:
Homo sapiens (human) : TRIM3 (tripartite motif containing 3)  HGNC  Alliance
Mus musculus (house mouse) : Trim3 (tripartite motif-containing 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim3 (tripartite motif containing 3)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM3 (tripartite motif containing 3)
Canis lupus familiaris (dog) : TRIM3 (tripartite motif containing 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim3 (tripartite motif containing 3)
Sus scrofa (pig) : TRIM3 (tripartite motif containing 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01170,441,662 - 170,464,341 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01177,447,514 - 177,470,193 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,337,614 - 163,362,846 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11163,433,089 - 163,458,323 (-)NCBI
Celera1157,883,619 - 157,906,308 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Trim3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 70074
Created: 2002-01-22
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.