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Gene: Atg16l2 (autophagy related 16-like 2) Rattus norvegicus
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Symbol: Atg16l2
Name: autophagy related 16-like 2
Description: Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to localize to autophagosome membrane and nucleoplasm. Orthologous to human ATG16L2 (autophagy related 16 like 2); PARTICIPATES IN autophagy pathway; INTERACTS WITH 1-naphthyl isothiocyanate; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: INFERRED
Also known as: ATG16 autophagy related 16-like 2; ATG16 autophagy related 16-like 2 (S. cerevisiae); autophagy related 16-like 2 (S. cerevisiae); autophagy-related protein 16-2; LOC308865; RGD1311400; similar to APG16L beta isoform
Orthologs:
Homo sapiens (human) : ATG16L2 (autophagy related 16 like 2)  HGNC  Alliance
Mus musculus (house mouse) : Atg16l2 (autophagy related 16-like 2 (S. cerevisiae))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg16l2 (autophagy related 16 like 2)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG16L2 (autophagy related 16 like 2)
Canis lupus familiaris (dog) : ATG16L2 (autophagy related 16 like 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg16l2 (autophagy related 16 like 2)
Sus scrofa (pig) : ATG16L2 (autophagy related 16 like 2)
Chlorocebus sabaeus (African green monkey) : ATG16L2 (autophagy related 16 like 2)
Heterocephalus glaber (naked mole-rat) : Atg16l2 (autophagy related 16 like 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01166,401,271 - 166,415,078 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,401,271 - 166,413,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,590,904 - 172,604,849 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,787,778 - 158,800,330 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11158,867,019 - 158,879,347 (-)NCBI
Celera1153,773,419 - 153,785,720 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Atg16l2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311400
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.