D1Rat163 Marker Search Result - Rat Genome Database

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Marker: D1Rat163

Symbol: D1Rat163
Previously known as: oxsts6580; R0055-A04; 
RGD ID: 37326
Expected Size: 107 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81173,673,785 - 173,673,892 (+)Marker Load Pipeline
mRatBN7.21164,239,029 - 164,239,136 (+)MAPPERmRatBN7.2
Rnor_6.01174,833,526 - 174,833,632NCBIRnor6.0
Rnor_5.01181,832,143 - 181,832,249UniSTSRnor5.0
RGSC_v3.41167,860,184 - 167,860,291RGDRGSC3.4
RGSC_v3.41167,860,185 - 167,860,291UniSTSRGSC3.4
RGSC_v3.11167,970,848 - 167,970,954RGD
Celera1162,135,205 - 162,135,311UniSTS
RH 3.4 Map11348.2UniSTS
RH 3.4 Map11348.2RGD
SHRSP x BN Map182.4UniSTS
SHRSP x BN Map182.4RGD
FHH x ACI Map176.55RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GAAGTTGTCTTCTGATAGCAAACA
Reverse Primer AGCTGGTAAGTATGTGACACGC
 
Template 
GTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCACCTCAGTCCCGAGTTCTGGAGT
CTGAAACTAAACATAAAGCATATCTCTAAAGCTGGTAAGTATGTGACACGCATAAGAAACACTG
TGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCT
ATCAGAAGACAACTTCTAGAACAACTTCAGTTCTTTCCCTTTTCCTTTCTCCCTTTTTTTTTTT
ATCTTTGATGTTTGTTTGCATGTGTGTCTACGNTTGGTGGTACCGAGCTCGAATTCGTAATCAT
GGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGG
AAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGC
TCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATAATGAATCGGCANNCGCGN
NAGCA
Strain, Expected Size(s)

ACI/N 115 AVN/Orl 115 BBDP/Rhw 107
BBDR/Rhw 107 BC/CpbU 107 BDIX/Han 101
BDVII/Cub 101 BN-Lx/Cub 109 BP/Cub 115
BUF/Pit 107 COP/OlaHsd 115 DA/PitN 115
DON/Melb 109 F344/Pit 109 FHH/Eur 107
GH/Omr 111 GK/KyoSwe 117 LE/Mol 113
LEW/Pit 109 LH/Mav 107 LN/Mav 107
LOU/CHan 107 M520/N 109 MHS/Gib 107
MNR/N 107 MNRA/N 107 MNS/Gib 109
MR/Pit 107 NEDH/K 107 NP9 107
ODU/N 117 OKA/Wsl 107 OM/Ztm 97
P5C 97 PVG/Pit 109 SD/Rij 107
SHR/OlaHsd 107 SHRSP/Riv 107 SR/Jr 105
SS/Jr 107 WAG/RijKyo 107 WF/Pit 107
WKY/OlaHsd 117 WN/N 97 WTC/Kyo 117


GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 73 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat

1 to 10 of 73 rows