Eed (embryonic ectoderm development)

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Gene: Eed (embryonic ectoderm development) Rattus norvegicus

Analyze

Symbol:

Eed

Name:

embryonic ectoderm development

RGD ID:

1309782

Description:

Enables chromatin binding activity. Involved in negative regulation of transcription by RNA polymerase II and spinal cord development. Located in nucleus. Used to study transient cerebral ischemia. Orthologous to human EED (embryonic ectoderm development); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC293104; polycomb protein EED

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EED (embryonic ectoderm development)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Eed (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Eed (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EED (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EED (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Eed (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EED (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EED (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Eed (embryonic ectoderm development)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	EED (embryonic ectoderm development)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Eed (embryonic ectoderm development)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	eed (embryonic ectoderm development)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	esc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	escl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mes-6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	143,867,875 - 143,895,008 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	143,867,875 - 143,894,974 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	151,808,615 - 151,835,700 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	158,985,009 - 159,012,094 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	151,858,916 - 151,886,001 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	154,189,252 - 154,216,340 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	154,189,260 - 154,216,340 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	160,493,753 - 160,520,834 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	146,563,961 - 146,591,042 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	146,642,345 - 146,669,450 (-)	NCBI
Celera	1	142,108,258 - 142,135,298 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Cohen-Gibson Syndrome (ISO)

exudative vitreoretinopathy 1 (ISO)

genetic disease (ISO)

hereditary breast ovarian cancer syndrome (ISO)

intellectual disability (ISO)

Kidney Reperfusion Injury (ISO)

Nerve Sheath Neoplasms (ISO)

neurilemmoma (ISO)

transient cerebral ischemia (IDA)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

aflatoxin B1 (ISO)

amiodarone (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

enzalutamide (ISO)

fipronil (EXP)

folic acid (ISO)

formaldehyde (ISO)

ivermectin (ISO)

leflunomide (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

morphine (ISO)

N-methyl-N-nitrosourea (ISO)

ozone (ISO)

paracetamol (ISO)

quinolin-8-ol (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to leukemia inhibitory factor (ISO)

facultative heterochromatin formation (ISO)

histone methylation (ISO)

negative regulation of transcription by RNA polymerase II (IBA,IDA,ISO)

oligodendrocyte differentiation (ISO)

positive regulation of histone H3-K27 methylation (ISO)

regulation of adaxial/abaxial pattern formation (ISO)

regulation of gene expression by genomic imprinting (ISO)

spinal cord development (IEP)

Cellular Component

chromatin silencing complex (ISO)

cytosol (ISO)

ESC/E(Z) complex (IBA,ISO)

nucleoplasm (ISO)

nucleus (IDA)

nucleus (ISO)

pronucleus (ISO)

sex chromatin (ISO)

Molecular Function

chromatin binding (IDA,ISO)

enzyme activator activity (ISO)

histone methyltransferase activity (ISO)

identical protein binding (ISO)

nucleosome binding (IBA)

protein binding (IPI,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

transcription corepressor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Early activation of nSMase2/ceramide pathway in astrocytes is involved in ischemia-associated neuronal damage via inflammation in rat hippocampi.	Gu L, etal., J Neuroinflammation. 2013 Sep 3;10:109. doi: 10.1186/1742-2094-10-109.
4.	SET for life: biochemical activities and biological functions of SET domain-containing proteins.	Herz HM, etal., Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Epub 2013 Oct 20.
5.	Epigenetic control of female puberty.	Lomniczi A, etal., Nat Neurosci. 2013 Mar;16(3):281-9. doi: 10.1038/nn.3319. Epub 2013 Jan 27.
6.	Accumulation of malignant renal stem cells is associated with epigenetic changes in normal renal progenitor genes.	Metsuyanim S, etal., Stem Cells. 2008 Jul;26(7):1808-17. doi: 10.1634/stemcells.2007-0322. Epub 2008 May 8.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put.	Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
10.	Polycomb group proteins are essential for spinal cord development.	Wang C, etal., Front Biosci (Landmark Ed). 2010 Jun 1;15:1018-22.

Additional References at PubMed

PMID:9584197	PMID:11124122	PMID:11555636	PMID:12477932	PMID:12627233	PMID:12900441	PMID:15385962	PMID:15525528	PMID:15916951	PMID:16687444	PMID:17107999	PMID:17997413
PMID:18483221	PMID:19796622	PMID:20064375	PMID:20064376	PMID:20075857	PMID:20144788	PMID:20439489	PMID:22438827	PMID:22573614	PMID:23104054	PMID:23273982	PMID:24105743
PMID:26658965	PMID:28041882	PMID:28229514	PMID:31451685	PMID:33479437

Genomics

Comparative Map Data

Eed
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	143,867,875 - 143,895,008 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	143,867,875 - 143,894,974 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	151,808,615 - 151,835,700 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	158,985,009 - 159,012,094 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	151,858,916 - 151,886,001 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	154,189,252 - 154,216,340 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	154,189,260 - 154,216,340 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	160,493,753 - 160,520,834 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	146,563,961 - 146,591,042 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	146,642,345 - 146,669,450 (-)	NCBI
Celera	1	142,108,258 - 142,135,298 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

EED
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	86,244,753 - 86,287,615 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	11	86,201,212 - 86,278,813 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	85,955,795 - 85,989,852 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	85,633,463 - 85,667,429 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	85,633,462 - 85,667,426	NCBI
Celera	11	83,265,529 - 83,300,439 (+)	NCBI		Celera
Cytogenetic Map	11	q14.2	NCBI
HuRef	11	82,243,000 - 82,278,147 (+)	NCBI		HuRef
CHM1_1	11	85,841,580 - 85,875,590 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	86,186,227 - 86,221,207 (+)	NCBI		T2T-CHM13v2.0

Eed
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	89,603,862 - 89,630,184 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	89,603,862 - 89,630,191 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	89,954,654 - 89,980,976 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	89,954,654 - 89,980,983 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	97,103,164 - 97,129,486 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	89,829,868 - 89,857,005 (-)	NCBI		MGSCv36	mm8
Celera	7	87,275,683 - 87,302,613 (-)	NCBI		Celera
Cytogenetic Map	7	D3	NCBI

Eed
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	6,659,055 - 6,685,530 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	6,659,144 - 6,685,530 (-)	NCBI	ChiLan1.0	ChiLan1.0

EED
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	84,902,330 - 84,937,906 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	84,902,330 - 84,937,906 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	81,295,068 - 81,330,321 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

EED
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	13,260,062 - 13,289,511 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	13,260,002 - 13,289,337 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	13,125,575 - 13,155,433 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	13,442,739 - 13,472,602 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	13,442,743 - 13,472,368 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	13,228,555 - 13,258,431 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	13,300,989 - 13,331,006 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	13,357,756 - 13,387,545 (-)	NCBI		UU_Cfam_GSD_1.0

Eed
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	72,451,606 - 72,483,821 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	14,051,045 - 14,083,570 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936498	14,050,731 - 14,082,410 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EED
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	20,123,857 - 20,158,816 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	20,123,077 - 20,158,747 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	22,382,548 - 22,417,549 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EED
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	77,496,266 - 77,531,439 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	77,496,086 - 77,531,499 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	48,194,395 - 48,229,592 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Eed
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624845	3,679,096 - 3,712,176 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624845	3,679,163 - 3,712,153 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Eed
125 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	42
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000024082
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642722	214537671	Rat
61346	Rf2	Renal disease susceptibility QTL 2	3.7		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	99267916	144267916	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	99267916	144267916	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
2303591	Gluco41	Glucose level QTL 41	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	102168504	147168504	Rat
61370	Mcs3	Mammary carcinoma susceptibility QTL 3	2.15		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	102268556	147268556	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	102813953	151162766	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	103111621	148111621	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	103111621	148111621	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	106047847	151047847	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	115585465	172949803	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
2313060	Bss71	Bone structure and strength QTL 71	2.6	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	1	118944747	163944747	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	121767634	166767634	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121833674	166833674	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	168883176	Rat
9685799	Bp375	Blood pressure QTL 375			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
9685802	Bp376	Blood pressure QTL 376			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	126540680	171540680	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	131763437	159756369	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	136745990	163747690	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	47	31	19	31	8	9	74	35	40	11	8
Low		8	10	10		10		2			1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000024082 ⟹ ENSRNOP00000024082

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	143,867,878 - 143,894,958 (-)	Ensembl
Rnor_6.0 Ensembl	1	154,189,260 - 154,216,340 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114221 ⟹ ENSRNOP00000093078

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	143,867,875 - 143,894,269 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115575 ⟹ ENSRNOP00000096570

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	143,867,917 - 143,894,958 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117476 ⟹ ENSRNOP00000085082

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	143,867,879 - 143,894,974 (-)	Ensembl

RefSeq Acc Id:

NM_001106278 ⟹ NP_001099748

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	143,867,875 - 143,894,958 (-)	NCBI
Rnor_6.0	1	154,189,259 - 154,216,340 (-)	NCBI
Rnor_5.0	1	160,493,753 - 160,520,834 (-)	NCBI
RGSC_v3.4	1	146,563,961 - 146,591,042 (-)	RGD
Celera	1	142,108,258 - 142,135,298 (-)	RGD

Sequence:

show sequence

CAATTGCGGACGAAACGTCTGGGCAAGGAAGGGGGTGAGGGAGCAGCCCTTTGAGTTCCGCCTC
CTCTCTAGGCGCTGGTGGGGAAGGGGGACTAGGAAACCCTGCCCTCTGAGCCAGCAGGTCCGAC
GCCTCGGTGCAAAGTGCCGAGAGGGCGGCGGGAAAACCGCCCGCCGGGACCAGGGGACGGGAAG
CAGCCAGGAAGCCGTACGGGAGGGCGCGCGCGCGCGCGCCCCTTTTTCAGCAGTGTGGCGGGGT
CGCACGCACGCCCGCCTCGGCGGCTGGGCGCGATTTGCGACAGTGGGGGGAGCGGCGGCGGTGG
CGGTGCCGGCAGCTTTGCGGCAGGCTCCGGCCGGGCGTGCTTGACGGCGGTGTGGCGGAGGCCC
CGCCCGAGGCGGCAAGAACCTGGAGGGAGGCGGAGGAATATGTCTGAGAGGGAAGTGTCGACTG
CGCCGGCGGGAACAGACATGCCGGCGGCCAAGAAGCAGAAGTTGAGCAGCGACGAGAACAGCAA
CCCGGACCTCTCGGGAGACGAGAATGACGATGCTGTCAGTATCGAGAGTGGCACAAACACAGAA
CGCCCGGACACACCCACAAATACACCAAATGCACCAGGAAGGAAAAGCTGGGGAAAGGGAAAAT
GGAAGTCGAAGAAATGCAAATATTCTTTCAAATGTGTGAACAGCCTCAAGGAAGATCACAACCA
GCCATTGTTTGGAGTTCAGTTTAACTGGCACAGTAAAGAAGGAGATCCTCTGGTGTTTGCAACT
GTGGGAAGCAACAGAGTAACCTTATATGAATGCCATTCTCAAGGGGAAATACGGTTATTGCAGT
CCTATGTAGATGCTGATGCAGATGAAAACTTTTACACTTGTGCATGGACCTATGATAGCAACAC
CAGCCACCCTCTGCTAGCAGTTGCTGGATCTAGAGGCATAATAAGAATAATTAATCCTATAACA
ATGCAGTGTATAAAGCACTATGTTGGCCATGGGAATGCTATCAATGAGCTGAAATTCCACCCAC
GAGACCCAAACCTTCTCCTGTCAGTAAGTAAAGATCATGCTTTACGATTATGGAATATCCAAAC
AGACACTCTTGTGGCAATATTCGGAGGTGTGGAAGGGCACAGAGATGAAGTGCTGAGTGCTGAT
TATGATCTTTTGGGTGAAAAAATAATGTCCTGTGGTATGGATCACTCTCTTAAACTGTGGAGAA
TCAACTCAAAGAGAATGATGAATGCGATTAAGGAATCTTACGATTATAACCCAAACAAAACTAA
CAGGCCATTTATTTCCCAGAAAATCCACTTTCCTGATTTTTCTACCAGAGACATACATAGGAAT
TATGTTGATTGTGTACGATGGTTAGGCGATTTGATACTTTCCAAGTCTTGTGAAAATGCCATTG
TATGCTGGAAACCTGGCAAAATGGAGGATGATATAGATAAAATTAAACCTAGTGAGTCTAATGT
GACTATTCTTGGGCGATTTGATTACAGCCAGTGTGACATTTGGTACATGAGGTTTTCTATGGAT
TTCTGGCAAAAGATGCTTGCATTGGGCAATCAGGTTGGCAAACTGTATGTTTGGGATTTAGAAG
TAGAAGATCCTCATAAAGCCAAATGCACAACACTGACCCATCATAAATGTGGCGCTGCTATTCG
ACAAACCAGTTTTAGCAGGGATAGCAGCATCCTCATAGCTGTCTGCGATGATGCCAGCATTTGG
CGTTGGGATCGACTTCGATAAACTATTTTTCCCTAGTAAAAATTAGAATATGTTGTCTGTGTAA
AATAGAATTAATGTATCTTGCTAGCAAAGGGACTAGAGCATTTAGACTTGTCTTTCAGCATCCG
ATCAGGCTGAGCTGAATGTAGTGGTGTTTACATTGTTTACATTCTTTGTACTGTCTTCCTGCTC
AGACTTTACTGCTTTTAATAAAAATTTATTTTTGTAAAGCTGTGTTATTTTTATTGTGATGGAA
ACAAACTGGAAGAAATAAAGTTATACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006229664 ⟹ XP_006229726

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	143,867,875 - 143,895,006 (-)	NCBI
Rnor_6.0	1	154,189,252 - 154,216,119 (-)	NCBI
Rnor_5.0	1	160,493,753 - 160,520,834 (-)	NCBI

Sequence:

show sequence

GCGCGCGCGCCCCTTTTTCAGCAGTGTGGCGGGGTCGCACGCACGCCCGCCTCGGCGGCTGGGC
GCGATTTGCGACAGTGGGGGGAGCGGCGGCGGTGGCGGTGCCGGCAGCTTTGCGGCAGGCTCCG
GCCGGGCGTGCTTGACGGCGGTGTGGCGGAGGCCCCGCCCGAGGCGGCAAGAACCTGGAGGGAG
GCGGAGGAATATGTCTGAGAGGGAAGTGTCGACTGCGCCGGCGGGAACAGACATGCCGGCGGCC
AAGAAGCAGAAGTTGAGCAGCGACGAGAACAGCAACCCGGACCTCTCGGGAGACGAGAATGACG
ATGCTGTCAGTATCGAGAGTGGCACAAACACAGAACGCCCGGACACACCCACAAATACACCAAA
TGCACCAGGAAGGAAAAGCTGGGGAAAGGGAAAATGGAAGTCGAAGAAATGCAAATATTCTTTC
AAATGTGTGAACAGCCTCAAGGAAGATCACAACCAGCCATTGTTTGGAGTTCAGTTTAACTGGC
ACAGTAAAGAAGGAGATCCTCTGGTGTTTGCAACTGTGGGAAGCAACAGAGTAACCTTATATGA
ATGCCATTCTCAAGGGGAAATACGGTTATTGCAGTCCTATGTAGATGCTGATGCAGATGAAAAC
TTTTACACTTGTGCATGGACCTATGATAGCAACACCAGCCACCCTCTGCTAGCAGTTGCTGGAT
CTAGAGGCATAATAAGAATAATTAATCCTATAACAATGCAGTGTATAAAGCACTATGTTGGCCA
TGGGAATGCTATCAATGAGCTGAAATTCCACCCACGAGACCCAAACCTTCTCCTGTCAGTAAGT
AAAGATCATGCTTTACGATTATGGAATATCCAAACAGACACTCTTGTGGCAATATTCGGAGGTG
TGGAAGGGCACAGAGATGAAGTGCTGAGTGCTGATTATGATCTTTTGGGTGAAAAAATAATGTC
CTGTGGTATGGATCACTCTCTTAAACTGTGGAGAATCAACTCAAAGAGAATGATGAATGCGATT
AAGGAATCTTACGATTATAACCCAAACAAAACTAACAGGCCATTTATTTCCCAGAAAATCCACT
TTCCTGATTTTTCTACCAGAGACATACATAGGAATTATGTTGATTGTGTACGATGGTTAGGCGA
TTTGATACTTTCCAAGTCTTGTGAAAATGCCATTGTATGCTGGAAACCTGGCAAAATGGAGGAT
GATATAGATAAAATTAAACCTAATGCTTGCATTGGGCAATCAGGTTGGCAAACTGTATGTTTGG
GATTTAGAAGTAGAAGATCCTCATAAAGCCAAATGCACAACACTGACCCATCATAAATGTGGCG
CTGCTATTCGACAAACCAGTTTTAGCAGGGATAGCAGCATCCTCATAGCTGTCTGCGATGATGC
CAGCATTTGGCGTTGGGATCGACTTCGATAAACTATTTTTCCCTAGTAAAAATTAGAATATGTT
GTCTGTGTAAAATAGAATTAATGTATCTTGCTAGCAAAGGGACTAGAGCATTTAGACTTGTCTT
TCAGCATCCGATCAGGCTGAGCTGAATGTAGTGGTGTTTACATTGTTTACATTCTTTGTACTGT
CTTCCTGCTCAGACTTTACTGCTTTTAATAAAAATTTATTTTTGTAAAGCTGTGTTATTTTTAT
TGTGATGGAAACAAACTGGAAGAAATAAAGTTATACCATATCTTCTT

hide sequence

RefSeq Acc Id:

XM_039105860 ⟹ XP_038961788

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	143,867,875 - 143,894,339 (-)	NCBI

RefSeq Acc Id:

XM_039105864 ⟹ XP_038961792

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	143,867,875 - 143,895,008 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099748	(Get FASTA)	NCBI Sequence Viewer
	XP_006229726	(Get FASTA)	NCBI Sequence Viewer
	XP_038961788	(Get FASTA)	NCBI Sequence Viewer
	XP_038961792	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68872	(Get FASTA)	NCBI Sequence Viewer
	EDM18565	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001099748 ⟸ NM_001106278

- UniProtKB:

B5DF02 (UniProtKB/TrEMBL), F1LMC5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTPNAPG
RKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS
QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA
INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM
DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLIL
SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG
KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR

hide sequence

RefSeq Acc Id:

XP_006229726 ⟸ XM_006229664

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTPNAPG
RKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS
QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA
INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM
DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLIL
SKSCENAIVCWKPGKMEDDIDKIKPNACIGQSGWQTVCLGFRSRRSS

hide sequence

RefSeq Acc Id:

ENSRNOP00000024082 ⟸ ENSRNOT00000024082

RefSeq Acc Id:	XP_038961792 ⟸ XM_039105864
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038961788 ⟸ XM_039105860
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000093078 ⟸ ENSRNOT00000114221

RefSeq Acc Id:

ENSRNOP00000096570 ⟸ ENSRNOT00000115575

RefSeq Acc Id:

ENSRNOP00000085082 ⟸ ENSRNOT00000117476

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DF02-F1-model_v2	AlphaFold	B5DF02	1-441	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690185

Promoter ID:

EPDNEW_R710

Type:

multiple initiation site

Name:

Eed_1

Description:

embryonic ectoderm development

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	154,216,356 - 154,216,416	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309782	AgrOrtholog
BioCyc Gene	G2FUF-58545	BioCyc
Ensembl Genes	ENSRNOG00000017509	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000024082	ENTREZGENE
	ENSRNOP00000024082.6	UniProtKB/TrEMBL
	ENSRNOP00000085082.1	UniProtKB/TrEMBL
	ENSRNOP00000093078	ENTREZGENE
	ENSRNOP00000093078.1	UniProtKB/TrEMBL
	ENSRNOP00000096570	ENTREZGENE
	ENSRNOP00000096570.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024082	ENTREZGENE
	ENSRNOT00000024082.7	UniProtKB/TrEMBL
	ENSRNOT00000114221	ENTREZGENE
	ENSRNOT00000114221.1	UniProtKB/TrEMBL
	ENSRNOT00000115575	ENTREZGENE
	ENSRNOT00000115575.1	UniProtKB/TrEMBL
	ENSRNOT00000117476.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:293104	UniProtKB/TrEMBL
NCBI Gene	293104	ENTREZGENE
PANTHER	POLYCOMB PROTEIN	UniProtKB/TrEMBL
	PTHR10253:SF5	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Eed	PhenoGen
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I6A2I3_RAT	UniProtKB/TrEMBL
	A0A8I6AJ96_RAT	UniProtKB/TrEMBL
	A0A8I6AQZ9_RAT	UniProtKB/TrEMBL
	A0A8J8YPE2_RAT	UniProtKB/TrEMBL
	B5DF02	ENTREZGENE, UniProtKB/TrEMBL
	F1LMC5	ENTREZGENE
UniProt Secondary	F1LMC5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Eed	embryonic ectoderm development	Eed_predicted	embryonic ectoderm development (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Eed_predicted	embryonic ectoderm development (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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