D1Rat216 Marker Search Result - Rat Genome Database

Symbol:

D1Rat216

Previously known as:

R0087-A04; oxsts6623;

RGD ID:

39314

Expected Size:

206 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	1	205,160,980 - 205,161,264	NCBI	Rnor5.0
RGSC_v3.4	1	185,923,336 - 185,923,619	RGD	RGSC3.4
RGSC_v3.1	1	186,073,217 - 186,073,500	RGD
RH 2.0 Map	1	961.9	RGD
SHRSP x BN Map	1	91.4399	RGD
FHH x ACI Map	1	86.55	RGD
Cytogenetic Map	5	q22	UniSTS

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav WKY.SHRSP-(D1Rat200-D1Rat216)/Bbb GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Uae1 Bp107 Glom17
Genes: Gne

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TGATGAACCAACTCTCTGAAAGC
Reverse Primer	TGCAGGTCAGTGTCATACAGG

Template	CTCGACTCTAGAGGACCCCCCCTGGGTTCGGTCCCCAGCTCCGGGGGGAAAAAAAAAAAAGAAT TGCAGGTCAGTGTCATACAGGTCTTGGTGGTCTGTTTTCTTTAGTCTGTTTTATTCCATGCTGT CACACAGTAAAGATGCAGTCTACTACTGAGTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGAGTATCCACATGCCATAGAATGTGTGTTGGAGGTCTGAAGAATAGCTTTCAGA GAGTTGGTTCATCATCTTTCATCATATTTTTTTTCCCCAGAAATTG

Strain Variation

Strain, Expected Size(s)

Region

Nucleotide Sequences

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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