Dlg2 (discs large MAGUK scaffold protein 2) - Rat Genome Database

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Gene: Dlg2 (discs large MAGUK scaffold protein 2) Rattus norvegicus
Analyze
Symbol: Dlg2
Name: discs large MAGUK scaffold protein 2
RGD ID: 619895
Description: Enables PDZ domain binding activity; protein C-terminus binding activity; and protein phosphatase binding activity. Involved in neuronal ion channel clustering and receptor clustering. Located in several cellular components, including glutamatergic synapse; juxtaparanode region of axon; and neuronal cell body. Is anchored component of postsynaptic density membrane. Orthologous to human DLG2 (discs large MAGUK scaffold protein 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: channel-associated protein of synapse-110; chapsyn-110; discs large homolog 2; discs, large (Drosophila) homolog 2 (chapsyn-110); discs, large homolog 2; discs, large homolog 2 (Drosophila); disks large 1 tumor suppressor protein-like; disks large homolog 2; Dlgh2; LOC108349816; postsynaptic density protein PSD-93; synaptic density protein PSD-93
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21144,451,653 - 146,503,949 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1144,451,472 - 146,499,475 (+)Ensembl
Rnor_6.01154,916,274 - 157,274,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1156,552,328 - 157,269,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01161,406,479 - 161,755,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01162,798,357 - 163,514,250 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41147,887,478 - 149,274,633 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11147,965,883 - 149,353,039 (+)NCBI
Celera1143,325,755 - 144,679,475 (+)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
1. Bender J, etal., PLoS One. 2015 Sep 9;10(9):e0136768. doi: 10.1371/journal.pone.0136768. eCollection 2015.
2. Brenman JE, etal., J Neurosci. 1998 Nov 1;18(21):8805-13.
3. Choi J, etal., J Neurosci. 2005 Jan 26;25(4):869-79.
4. DeMarco SJ and Strehler EE, J Biol Chem. 2001 Jun 15;276(24):21594-600. Epub 2001 Mar 26.
5. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. GOA data from the GO Consortium
7. Horresh I, etal., J Neurosci. 2008 Dec 24;28(52):14213-22. doi: 10.1523/JNEUROSCI.3398-08.2008.
8. Kim E, etal., Neuron 1996 Jul;17(1):103-13.
9. Kim K, etal., EMBO J. 2009 Apr 22;28(8):1170-9. doi: 10.1038/emboj.2009.44. Epub 2009 Feb 19.
10. Lee HW, etal., J Neurosci. 2010 Apr 21;30(16):5508-18. doi: 10.1523/JNEUROSCI.4283-09.2010.
11. Leonoudakis D, etal., J Biol Chem. 2004 May 21;279(21):22331-46. Epub 2004 Mar 15.
12. MGD data from the GO Consortium
13. Mok H, etal., J Neurosci. 2002 Jul 1;22(13):5253-8.
14. NCBI rat LocusLink and RefSeq merged data July 26, 2002
15. Ogawa Y, etal., J Neurosci. 2010 Jan 20;30(3):1038-48. doi: 10.1523/JNEUROSCI.4661-09.2010.
16. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. RGD automated import pipeline for gene-chemical interactions
18. Roche KW, etal., J Neurosci. 1999 May 15;19(10):3926-34.
19. Sans N, etal., J Neurosci. 2000 Feb 1;20(3):1260-71.
20. Sussman HM, etal., J Speech Hear Res. 1975 Mar;18(1):74-81.
21. Takeuchi M, etal., J Biol Chem 1997 May 2;272(18):11943-51.
22. Yang J, etal., EMBO J. 2011 Jan 5;30(1):165-80. doi: 10.1038/emboj.2010.286. Epub 2010 Nov 30.
Additional References at PubMed
PMID:8625413   PMID:12351654   PMID:12890763   PMID:14581127   PMID:15458844   PMID:17046693   PMID:17114649   PMID:17646177   PMID:17670980   PMID:18392731   PMID:19389623   PMID:21920314  
PMID:22618309   PMID:22871113   PMID:26609151   PMID:29476059   PMID:29490264   PMID:29703139  


Genomics

Comparative Map Data
Dlg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21144,451,653 - 146,503,949 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1144,451,472 - 146,499,475 (+)Ensembl
Rnor_6.01154,916,274 - 157,274,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1156,552,328 - 157,269,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01161,406,479 - 161,755,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01162,798,357 - 163,514,250 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41147,887,478 - 149,274,633 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11147,965,883 - 149,353,039 (+)NCBI
Celera1143,325,755 - 144,679,475 (+)NCBICelera
Cytogenetic Map1q32NCBI
DLG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1183,455,012 - 85,627,922 (-)EnsemblGRCh38hg38GRCh38
GRCh381183,455,009 - 85,628,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371183,166,055 - 85,339,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361182,843,701 - 84,312,113 (-)NCBINCBI36hg18NCBI36
Build 341182,848,326 - 84,312,086NCBI
Celera1180,475,660 - 82,647,628 (-)NCBI
Cytogenetic Map11q14.1NCBI
HuRef1179,462,967 - 81,635,607 (-)NCBIHuRef
CHM1_11183,050,274 - 85,223,105 (-)NCBICHM1_1
Dlg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39790,125,399 - 92,098,454 (+)NCBIGRCm39mm39
GRCm39 Ensembl790,125,880 - 92,098,455 (+)Ensembl
GRCm38790,476,188 - 92,449,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl790,476,672 - 92,449,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv37798,239,296 - 99,597,599 (+)NCBIGRCm37mm9NCBIm37
MGSCv36790,966,199 - 92,319,809 (+)NCBImm8
Celera788,404,695 - 89,743,714 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map751.07NCBI
Dlg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554147,850,450 - 9,171,815 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554147,247,248 - 9,171,664 (+)NCBIChiLan1.0ChiLan1.0
DLG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11182,128,746 - 84,292,892 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,128,746 - 84,263,241 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01178,517,601 - 80,684,319 (-)NCBIMhudiblu_PPA_v0panPan3
DLG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12113,796,725 - 15,776,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2113,822,304 - 15,771,954 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2113,663,385 - 15,653,637 (+)NCBI
ROS_Cfam_1.02113,977,510 - 15,952,393 (+)NCBI
UMICH_Zoey_3.12113,766,016 - 15,738,343 (+)NCBI
UNSW_CanFamBas_1.02113,838,337 - 15,807,447 (+)NCBI
UU_Cfam_GSD_1.02113,891,131 - 15,878,733 (+)NCBI
Dlg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494769,949,923 - 71,919,548 (-)NCBI
SpeTri2.0NW_00493649811,549,526 - 13,519,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl917,576,135 - 19,546,887 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1917,575,991 - 19,547,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2919,475,047 - 19,507,287 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DLG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1174,643,873 - 76,869,208 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl174,648,540 - 75,433,146 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604348,857,492 - 51,041,227 (+)NCBIVero_WHO_p1.0
Dlg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248454,816,734 - 6,426,548 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D1Mgh33  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01161,670,150 - 161,671,347NCBIRnor5.0
Rnor_5.01160,969,120 - 160,970,317NCBIRnor5.0
RGSC_v3.41148,154,373 - 148,155,569RGDRGSC3.4
RGSC_v3.11148,232,855 - 148,232,998RGD
RH 3.4 Map11126.6UniSTS
RH 3.4 Map11126.6RGD
Cytogenetic Map1q32UniSTS
D1Rat418  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,261,854 - 146,262,051 (+)MAPPERmRatBN7.2
Rnor_6.01157,032,393 - 157,032,587NCBIRnor6.0
Rnor_5.01163,276,344 - 163,276,538UniSTSRnor5.0
RGSC_v3.41149,035,389 - 149,035,584RGDRGSC3.4
RGSC_v3.41149,035,390 - 149,035,584UniSTSRGSC3.4
RGSC_v3.11149,113,795 - 149,113,990RGD
Celera1144,441,467 - 144,441,661UniSTS
SHRSP x BN Map174.4799RGD
SHRSP x BN Map174.4799UniSTS
Cytogenetic Map1q32UniSTS
D1Mco66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,263,902 - 146,264,099 (+)MAPPERmRatBN7.2
Rnor_6.01157,034,439 - 157,034,635NCBIRnor6.0
Rnor_5.01163,278,390 - 163,278,586UniSTSRnor5.0
RGSC_v3.41149,037,436 - 149,037,632UniSTSRGSC3.4
Celera1144,443,513 - 144,443,709UniSTS
Cytogenetic Map1q32UniSTS
RH144187  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,480,291 - 146,480,393 (+)MAPPERmRatBN7.2
Rnor_6.01157,250,537 - 157,250,638NCBIRnor6.0
Rnor_5.01163,495,147 - 163,495,248UniSTSRnor5.0
RGSC_v3.41149,255,467 - 149,255,568UniSTSRGSC3.4
Celera1144,660,298 - 144,660,399UniSTS
RH 3.4 Map11131.1UniSTS
Cytogenetic Map1q32UniSTS
BE119877  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,382,254 - 145,382,448 (+)MAPPERmRatBN7.2
Rnor_6.01155,402,196 - 155,402,389NCBIRnor6.0
Rnor_6.01154,699,063 - 154,699,256NCBIRnor6.0
Rnor_5.01161,661,113 - 161,661,306UniSTSRnor5.0
Rnor_5.01160,960,217 - 160,960,410UniSTSRnor5.0
RGSC_v3.41148,145,469 - 148,145,662UniSTSRGSC3.4
Celera1143,580,537 - 143,580,730UniSTS
RH 3.4 Map11127.5UniSTS
Cytogenetic Map1q32UniSTS
AU049702  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,094,300 - 146,094,445 (+)MAPPERmRatBN7.2
Rnor_6.01156,866,405 - 156,866,547NCBIRnor6.0
Rnor_5.01163,110,356 - 163,110,498UniSTSRnor5.0
RGSC_v3.41148,866,081 - 148,866,223UniSTSRGSC3.4
Celera1144,280,834 - 144,280,976UniSTS
Cytogenetic Map1q32UniSTS
RH132317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,780,592 - 145,780,780 (+)MAPPERmRatBN7.2
Rnor_6.01156,554,086 - 156,554,273NCBIRnor6.0
Rnor_5.01162,800,103 - 162,800,290UniSTSRnor5.0
RGSC_v3.41148,547,239 - 148,547,426UniSTSRGSC3.4
Celera1143,976,760 - 143,976,947UniSTS
RH 3.4 Map11130.7UniSTS
Cytogenetic Map1q32UniSTS
RH133190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,281,981 - 146,282,176 (+)MAPPERmRatBN7.2
Rnor_6.01157,052,518 - 157,052,712NCBIRnor6.0
Rnor_5.01163,296,469 - 163,296,663UniSTSRnor5.0
RGSC_v3.41149,055,515 - 149,055,709UniSTSRGSC3.4
Celera1144,461,695 - 144,461,889UniSTS
RH 3.4 Map11131.9UniSTS
Cytogenetic Map1q32UniSTS
RH144233  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,278,738 - 146,278,999 (+)MAPPERmRatBN7.2
Rnor_6.01157,049,275 - 157,049,535NCBIRnor6.0
Rnor_5.01163,293,226 - 163,293,486UniSTSRnor5.0
RGSC_v3.41149,052,272 - 149,052,532UniSTSRGSC3.4
Celera1144,458,436 - 144,458,696UniSTS
RH 3.4 Map11132.3UniSTS
Cytogenetic Map1q32UniSTS
RH144340  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,131,683 - 146,131,867 (+)MAPPERmRatBN7.2
Rnor_6.01156,903,786 - 156,903,969NCBIRnor6.0
Rnor_6.01155,811,451 - 155,811,634NCBIRnor6.0
Rnor_5.01163,147,737 - 163,147,920UniSTSRnor5.0
Rnor_5.01162,064,482 - 162,064,665UniSTSRnor5.0
RGSC_v3.41148,903,462 - 148,903,645UniSTSRGSC3.4
Celera1144,318,118 - 144,318,301UniSTS
RH 3.4 Map11130.7UniSTS
Cytogenetic Map1q32UniSTS
BF394251  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,666,174 - 145,666,392 (+)MAPPERmRatBN7.2
Rnor_6.01155,701,227 - 155,701,444NCBIRnor6.0
Rnor_5.01161,958,767 - 161,958,984UniSTSRnor5.0
RGSC_v3.41148,430,481 - 148,430,698UniSTSRGSC3.4
Celera1143,862,821 - 143,863,038UniSTS
RH 3.4 Map11131.9UniSTS
Cytogenetic Map1q32UniSTS
BE121387  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,577,783 - 145,577,945 (+)MAPPERmRatBN7.2
Rnor_6.01155,599,384 - 155,599,545NCBIRnor6.0
Rnor_5.01161,857,505 - 161,857,666UniSTSRnor5.0
RGSC_v3.41148,341,514 - 148,341,675UniSTSRGSC3.4
Celera1143,774,779 - 143,774,940UniSTS
RH 3.4 Map11131.6UniSTS
Cytogenetic Map1q32UniSTS
BF406018  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,582,788 - 145,582,974 (+)MAPPERmRatBN7.2
Rnor_6.01155,604,385 - 155,604,570NCBIRnor6.0
Rnor_5.01161,862,506 - 161,862,691UniSTSRnor5.0
RGSC_v3.41148,346,515 - 148,346,700UniSTSRGSC3.4
Celera1143,779,780 - 143,779,965UniSTS
RH 3.4 Map11131.6UniSTS
Cytogenetic Map1q32UniSTS
BF406149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,356,868 - 146,357,066 (+)MAPPERmRatBN7.2
Rnor_6.01157,128,140 - 157,128,337NCBIRnor6.0
Rnor_5.01163,372,091 - 163,372,288UniSTSRnor5.0
RGSC_v3.41149,129,983 - 149,130,180UniSTSRGSC3.4
Celera1144,536,541 - 144,536,738UniSTS
RH 3.4 Map11132.5UniSTS
Cytogenetic Map1q32UniSTS
RH138030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,136,737 - 145,136,975 (+)MAPPERmRatBN7.2
Rnor_6.01155,157,367 - 155,157,604NCBIRnor6.0
Rnor_5.01161,416,042 - 161,416,279UniSTSRnor5.0
RGSC_v3.41147,897,041 - 147,897,278UniSTSRGSC3.4
Celera1143,335,318 - 143,335,555UniSTS
RH 3.4 Map11128.1UniSTS
Cytogenetic Map1q32UniSTS
AI073009  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map11132.19UniSTS
Cytogenetic Map1q32UniSTS
px-1d6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,927,174 - 145,927,285 (+)MAPPERmRatBN7.2
Rnor_6.01156,703,153 - 156,703,263NCBIRnor6.0
Rnor_5.01162,948,388 - 162,948,498UniSTSRnor5.0
RGSC_v3.41148,696,770 - 148,696,880UniSTSRGSC3.4
Celera1144,114,855 - 144,114,965UniSTS
Cytogenetic Map1q32UniSTS
px-65a8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21145,894,795 - 145,895,990 (+)MAPPERmRatBN7.2
Rnor_6.01156,666,506 - 156,667,701NCBIRnor6.0
Rnor_5.01162,912,430 - 162,913,625UniSTSRnor5.0
RGSC_v3.41148,664,194 - 148,665,389UniSTSRGSC3.4
Celera1144,084,574 - 144,085,768UniSTS
Cytogenetic Map1q32UniSTS
STS-H29287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21146,268,646 - 146,269,375 (+)MAPPERmRatBN7.2
Rnor_6.01157,039,183 - 157,039,911NCBIRnor6.0
Rnor_5.01163,283,134 - 163,283,862UniSTSRnor5.0
RGSC_v3.41149,042,180 - 149,042,908UniSTSRGSC3.4
RGSC_v3.41149,042,180 - 149,042,909UniSTSRGSC3.4
Celera1144,448,257 - 144,448,985UniSTS
Cytogenetic Map1q32UniSTS
rs197197017  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01156,969,388 - 156,969,388RGDRnor6.0
Rnor_5.01163,213,339 - 163,213,339RGDRnor5.0
RGSC_v3.41148,969,064 - 148,969,064RGDRGSC3.4


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642722214537671Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383635Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:451
Count of miRNA genes:209
Interacting mature miRNAs:252
Transcripts:ENSRNOT00000034416, ENSRNOT00000055397, ENSRNOT00000055399, ENSRNOT00000055401, ENSRNOT00000055402
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 62
Low 2 39 14 6 19 6 5 5 12 33 39 11 5
Below cutoff 1 4 24 24 24 3 3 2 2 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U49049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U53368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000055401   ⟹   ENSRNOP00000052268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,920,122 - 146,499,475 (+)Ensembl
Rnor_6.0 Ensembl1156,552,328 - 157,269,747 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095796   ⟹   ENSRNOP00000079565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,925,082 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103147   ⟹   ENSRNOP00000085363
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,287,999 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106839   ⟹   ENSRNOP00000078924
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,722,510 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108774   ⟹   ENSRNOP00000092409
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,124,611 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110277   ⟹   ENSRNOP00000097641
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,124,611 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112321   ⟹   ENSRNOP00000076548
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,451,472 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115131   ⟹   ENSRNOP00000096630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,722,510 - 146,499,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115717   ⟹   ENSRNOP00000086687
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,757,615 - 146,499,475 (+)Ensembl
RefSeq Acc Id: NM_022282   ⟹   NP_071618
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,127,175 - 146,499,475 (+)NCBI
Rnor_6.01155,147,804 - 157,269,747 (+)NCBI
Rnor_5.01161,406,479 - 161,755,112 (+)NCBI
Rnor_5.01162,798,357 - 163,514,250 (+)NCBI
RGSC_v3.41147,887,478 - 149,274,633 (+)RGD
Celera1143,325,755 - 144,679,475 (+)RGD
Sequence:
RefSeq Acc Id: XM_008759648   ⟹   XP_008757870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,126,553 - 146,503,949 (+)NCBI
Rnor_6.01155,147,654 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008759649   ⟹   XP_008757871
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21146,303,685 - 146,503,949 (+)NCBI
Rnor_6.01157,073,310 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589651   ⟹   XP_017445140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,924,903 - 146,503,949 (+)NCBI
Rnor_6.01154,943,291 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589652   ⟹   XP_017445141
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,287,984 - 146,503,949 (+)NCBI
Rnor_6.01155,301,721 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589653   ⟹   XP_017445142
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,757,207 - 146,503,949 (+)NCBI
Rnor_6.01156,528,219 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589654   ⟹   XP_017445143
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,573,780 - 146,503,949 (+)NCBI
Rnor_6.01155,596,609 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589655   ⟹   XP_017445144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21146,260,178 - 146,503,949 (+)NCBI
Rnor_6.01157,030,644 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589656   ⟹   XP_017445145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,757,347 - 146,503,949 (+)NCBI
Rnor_6.01156,528,949 - 157,274,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089312   ⟹   XP_038945240
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089318   ⟹   XP_038945246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089327   ⟹   XP_038945255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089335   ⟹   XP_038945263
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089341   ⟹   XP_038945269
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089345   ⟹   XP_038945273
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089349   ⟹   XP_038945277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,451,653 - 146,503,805 (+)NCBI
RefSeq Acc Id: XM_039089356   ⟹   XP_038945284
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,721,734 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089365   ⟹   XP_038945293
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,721,735 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089369   ⟹   XP_038945297
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,924,903 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089384   ⟹   XP_038945312
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,721,740 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089393   ⟹   XP_038945321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,126,552 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089403   ⟹   XP_038945331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,721,732 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089414   ⟹   XP_038945342
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,721,738 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089416   ⟹   XP_038945344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,757,352 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089419   ⟹   XP_038945347
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,573,782 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089424   ⟹   XP_038945352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,894,664 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089431   ⟹   XP_038945359
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21146,190,064 - 146,503,949 (+)NCBI
RefSeq Acc Id: XM_039089452   ⟹   XP_038945380
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21145,287,988 - 146,503,949 (+)NCBI
Protein Sequences
Protein RefSeqs NP_071618 (Get FASTA)   NCBI Sequence Viewer  
  XP_008757870 (Get FASTA)   NCBI Sequence Viewer  
  XP_008757871 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445140 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445141 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445142 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445143 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445144 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445145 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945240 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945246 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945255 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945263 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945269 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945273 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945277 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945284 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945293 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945297 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945312 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945352 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945359 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945380 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB48562 (Get FASTA)   NCBI Sequence Viewer  
  AAB53243 (Get FASTA)   NCBI Sequence Viewer  
  AAC52643 (Get FASTA)   NCBI Sequence Viewer  
  EDM18525 (Get FASTA)   NCBI Sequence Viewer  
  EDM18526 (Get FASTA)   NCBI Sequence Viewer  
  EDM18527 (Get FASTA)   NCBI Sequence Viewer  
  EDM18528 (Get FASTA)   NCBI Sequence Viewer  
  Q63622 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071618   ⟸   NM_022282
- Sequence:
RefSeq Acc Id: XP_008757870   ⟸   XM_008759648
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_008757871   ⟸   XM_008759649
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_017445140   ⟸   XM_017589651
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017445141   ⟸   XM_017589652
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017445143   ⟸   XM_017589654
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017445142   ⟸   XM_017589653
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017445145   ⟸   XM_017589656
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017445144   ⟸   XM_017589655
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: ENSRNOP00000052268   ⟸   ENSRNOT00000055401
RefSeq Acc Id: XP_038945255   ⟸   XM_039089327
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038945263   ⟸   XM_039089335
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038945269   ⟸   XM_039089341
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038945273   ⟸   XM_039089345
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038945277   ⟸   XM_039089349
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038945246   ⟸   XM_039089318
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038945240   ⟸   XM_039089312
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945352   ⟸   XM_039089424
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038945297   ⟸   XM_039089369
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038945321   ⟸   XM_039089393
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038945380   ⟸   XM_039089452
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038945347   ⟸   XM_039089419
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038945331   ⟸   XM_039089403
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038945284   ⟸   XM_039089356
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038945293   ⟸   XM_039089365
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038945342   ⟸   XM_039089414
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038945312   ⟸   XM_039089384
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038945344   ⟸   XM_039089416
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038945359   ⟸   XM_039089431
- Peptide Label: isoform X24
RefSeq Acc Id: ENSRNOP00000079565   ⟸   ENSRNOT00000095796
RefSeq Acc Id: ENSRNOP00000092409   ⟸   ENSRNOT00000108774
RefSeq Acc Id: ENSRNOP00000096630   ⟸   ENSRNOT00000115131
RefSeq Acc Id: ENSRNOP00000076548   ⟸   ENSRNOT00000112321
RefSeq Acc Id: ENSRNOP00000078924   ⟸   ENSRNOT00000106839
RefSeq Acc Id: ENSRNOP00000097641   ⟸   ENSRNOT00000110277
RefSeq Acc Id: ENSRNOP00000085363   ⟸   ENSRNOT00000103147
RefSeq Acc Id: ENSRNOP00000086687   ⟸   ENSRNOT00000115717
Protein Domains
Guanylate kinase-like   PDZ   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619895 AgrOrtholog
Ensembl Genes ENSRNOG00000022635 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000052268 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055401 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DLG1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DLG1_PEST_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DLG2_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64053 UniProtKB/Swiss-Prot
NCBI Gene 64053 ENTREZGENE
Pfam Guanylate_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGUK_N_PEST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dlg2 PhenoGen
PIRSF MAGUK_DLGH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GUANYLATE_KINASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GUANYLATE_KINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GuKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGUK_N_PEST UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt DLG2_RAT UniProtKB/Swiss-Prot
  F1M907_RAT UniProtKB/TrEMBL
  Q63622 ENTREZGENE
UniProt Secondary P70548 UniProtKB/Swiss-Prot
  Q62939 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Dlg2  discs large MAGUK scaffold protein 2  LOC108349816  disks large 1 tumor suppressor protein-like  Data Merged 737654 PROVISIONAL
2016-08-02 LOC108349816  disks large 1 tumor suppressor protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2016-06-01 Dlg2  discs large MAGUK scaffold protein 2  Dlg2  discs large homolog 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-27 Dlg2  discs large homolog 2  Dlg2  discs, large homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-19 Dlg2  discs, large homolog 2 (Drosophila)  Dlgh2  discs, large homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Dlgh2  discs, large homolog 2 (Drosophila)  Dlg2  discs, large (Drosophila) homolog 2 (chapsyn-110)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Dlg2  discs, large (Drosophila) homolog 2 (chapsyn-110)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression specifically expressed in neuronal cells; enriched in postsynaptic density (PSD) fraction 68237