 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology AnnotationsMolecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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Gene Ontology AnnotationsMolecular Pathway AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Bockmann J, etal., J Neurochem. 2002 Nov;83(4):1013-7. |
| 2. | Burette AC, etal., J Comp Neurol. 2014 Jun 15;522(9):2164-78. doi: 10.1002/cne.23526. |
| 3. | Chen CJ, etal., J Biol Chem. 2015 Mar 6;290(10):6010-21. doi: 10.1074/jbc.M114.603795. Epub 2015 Jan 13. |
| 4. | Choi J, etal., J Neurosci. 2005 Jan 26;25(4):869-79. |
| 5. | Chuang HC, etal., Autism Res. 2015 Aug;8(4):412-26. doi: 10.1002/aur.1456. Epub 2015 Jan 20. |
| 6. | Connolly BA, etal., Mol Cell Biol. 2005 Jun;25(11):4602-14. |
| 7. | El-Sibai M, etal., J Cell Sci. 2007 Oct 1;120(Pt 19):3465-74. Epub 2007 Sep 12. |
| 8. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 9. | GOA data from the GO Consortium |
| 10. | Hori K, etal., FEBS Lett. 2003 Nov 6;554(1-2):30-4. |
| 11. | Hori K, etal., J Neurosci. 2005 Mar 9;25(10):2670-81. |
| 12. | Liu L, etal., Behav Brain Funct. 2013 Dec 30;9:48. doi: 10.1186/1744-9081-9-48. |
| 13. | MGD data from the GO Consortium |
| 14. | Nakagawa H, etal., J Cell Sci 2003 Jun 15;116(Pt 12):2577-83. Epub 2003 May 6. |
| 15. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 16. | Okamura-Oho Y, etal., Hum Mol Genet. 1999 Jun;8(6):947-57. |
| 17. | Paschou P, etal., Am J Hum Genet. 2004 Oct;75(4):545-60. Epub 2004 Aug 9. |
| 18. | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 19. | Redecker P, etal., Cell Tissue Res. 2007 Apr;328(1):49-55. Epub 2006 Nov 22. |
| 20. | RGD automated import pipeline for gene-chemical interactions |
| 21. | Satoh T Small GTPases. 2014;5:e28102. doi: 10.4161/sgtp.28102. Epub 2014 Mar 10. |
| 22. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
| 23. | Thomas EA, etal., Neurosci Lett 2001 Aug 31;309(3):145-8. |
| 24. | Toma C, etal., J Psychiatr Res. 2011 Feb;45(2):280-2. doi: 10.1016/j.jpsychires.2010.09.001. |
| 25. | Yanagida-Asanuma E, etal., Am J Pathol. 2007 Aug;171(2):415-27. Epub 2007 Jun 14. |
| 26. | Zhou J, etal., Clin Chim Acta. 2013 May;420:62-8. doi: 10.1016/j.cca.2013.03.016. Epub 2013 Mar 26. |
References - uncurated| PubMed | 11696321 11741283 12598619 14752106 15489334 17115031 19056867 19193906 19208628 19366662 21795692 23376485 23533145 23750457 24076653 24584464 25416956 25468996 29284046 29476059 |
Genomics
Comparative Map Data| Baiap2 (Rattus norvegicus - Norway rat) |
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| BAIAP2 (Homo sapiens - human) |
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| Baiap2 (Mus musculus - house mouse) |
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| Baiap2 (Chinchilla lanigera - long-tailed chinchilla) |
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| BAIAP2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| BAIAP2 (Canis lupus familiaris - dog) |
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| Baiap2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| BAIAP2 (Sus scrofa - pig) |
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| BAIAP2 (Chlorocebus sabaeus - African green monkey) |
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| Baiap2 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| D11Mit298.5 |
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| RH127793 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 20 | 53 | 37 | 19 | 37 | 58 | 35 | 37 | 11 | |||
| Low | 23 | 4 | 4 | 4 | 8 | 11 | 16 | 4 | 8 | ||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_057196 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006247869 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006247870 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006247871 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006247872 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008768464 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07030914 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07030915 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07030916 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01066974 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01066975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01066976 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01066977 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB105195 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AY037934 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC074009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473948 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ213844 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000005687 ⟹ ENSRNOP00000005687 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000068437 ⟹ ENSRNOP00000060172 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_057196 ⟹ NP_476544 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GCCTTTCTCACCGACACCCGTGCCCCTGCTCTGGTCTGTGGTGTAGCCGGGACCCAGGACCATGhide sequence |
| RefSeq Acc Id: | XM_006247869 ⟹ XP_006247931 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGCTGCCCGGCGCCGCGCTCTGTGGTCCTGGTCTGCGCGCCTTTTCCTGTTGCTGCAGTTGTCGhide sequence |
| RefSeq Acc Id: | XM_006247870 ⟹ XP_006247932 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGCTGCCCGGCGCCGCGCTCTGTGGTCCTGGTCTGCGCGCCTTTTCCTGTTGCTGCAGTTGTCGhide sequence |
| RefSeq Acc Id: | XM_006247871 ⟹ XP_006247933 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGCTGCCCGGCGCCGCGCTCTGTGGTCCTGGTCTGCGCGCCTTTTCCTGTTGCTGCAGTTGTCGhide sequence |
| RefSeq Acc Id: | XM_006247872 ⟹ XP_006247934 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGCTGCCCGGCGCCGCGCTCTGTGGTCCTGGTCTGCGCGCCTTTTCCTGTTGCTGCAGTTGTCGhide sequence |
| RefSeq Acc Id: | XM_008768464 ⟹ XP_008766686 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCTGCCCGGCGCCGCGCTCTGTGGTCCTGGTCTGCGCGCCTTTTCCTGTTGCTGCAGTTGTCGhide sequence |
Protein Sequences| Protein RefSeqs | NP_476544 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006247931 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006247932 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006247933 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006247934 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008766686 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH74009 | (Get FASTA) | NCBI Sequence Viewer |
| AAK72488 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM06805 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM06806 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM06807 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM06808 | (Get FASTA) | NCBI Sequence Viewer | |
| Q6GMN2 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_476544 ⟸ NM_057196 |
| - UniProtKB: | Q6GMN2 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELAShide sequence |
| RefSeq Acc Id: | XP_006247932 ⟸ XM_006247870 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELAShide sequence |
| RefSeq Acc Id: | XP_006247931 ⟸ XM_006247869 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q6GMN2 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELAShide sequence |
| RefSeq Acc Id: | XP_006247933 ⟸ XM_006247871 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELAShide sequence |
| RefSeq Acc Id: | XP_006247934 ⟸ XM_006247872 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELAShide sequence |
| RefSeq Acc Id: | XP_008766686 ⟸ XM_008768464 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELAShide sequence |
| RefSeq Acc Id: | ENSRNOP00000060172 ⟸ ENSRNOT00000068437 |
| RefSeq Acc Id: | ENSRNOP00000005687 ⟸ ENSRNOT00000005687 |
Protein Domains
IMD SH3
TranscriptomePromoters| RGD ID: | 13697948 | ||||||||
| Promoter ID: | EPDNEW_R8473 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Baiap2_1 | ||||||||
| Description: | BAI1-associated protein 2 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:619814 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000004049 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000005687 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000060172 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000005687 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000068437 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 1.20.1270.60 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7099884 | IMAGE-MGC_LOAD |
| InterPro | AH/BAR_dom_sf | UniProtKB/Swiss-Prot |
| I-BAR_dom | UniProtKB/Swiss-Prot | |
| IRSp53 | UniProtKB/Swiss-Prot | |
| IRSp53/IRTKS/Pinkbar | UniProtKB/Swiss-Prot | |
| Irsp53_SH3 | UniProtKB/Swiss-Prot | |
| SH3-like_dom_sf | UniProtKB/Swiss-Prot | |
| SH3_domain | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:117542 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:91531 | IMAGE-MGC_LOAD |
| NCBI Gene | 117542 | ENTREZGENE |
| PANTHER | PTHR14206 | UniProtKB/Swiss-Prot |
| PTHR14206:SF3 | UniProtKB/Swiss-Prot | |
| Pfam | IMD | UniProtKB/Swiss-Prot |
| SH3_9 | UniProtKB/Swiss-Prot | |
| PhenoGen | Baiap2 | PhenoGen |
| PROSITE | IMD | UniProtKB/Swiss-Prot |
| SH3 | UniProtKB/Swiss-Prot | |
| SMART | SH3 | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF103657 | UniProtKB/Swiss-Prot |
| SSF50044 | UniProtKB/Swiss-Prot | |
| UniGene | Rn.95155 | ENTREZGENE |
| UniProt | BAIP2_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
| UniProt Secondary | Q923H3 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2019-08-05 | Baiap2 | BAR/IMD domain containing adaptor protein 2 | Baiap2 | BAI1-associated protein 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-09-25 | Baiap2 | BAI1-associated protein 2 | Baiap2 | brain-specific angiogenesis inhibitor 1-associated protein 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2004-02-26 | Baiap2 | brain-specific angiogenesis inhibitor 1-associated protein 2 | Symbol and Name status set to approved | 625702 | APPROVED | ||
| 2002-08-07 | Baiap2 | brain-specific angiogenesis inhibitor 1-associated protein 2 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_expression | mRNA expressed in the cerebellum, subthalamic nucleus, pons, amygdala, hypothalamus, and forebrain structures, including the cerebral cortex, striatum, hippocampus and olfactory bulb | 632274 |
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| More on Baiap2 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 619814 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
