Rps3 (ribosomal protein S3) - Rat Genome Database

Name: Rps3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rps3 (ribosomal protein S3) Rattus norvegicus

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Symbol:

Rps3

Name:

ribosomal protein S3

Description:

Exhibits kinase binding activity. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in cellular response to DNA damage stimulus; cellular response to nerve growth factor stimulus; and regulation of apoptotic process. Localizes to several cellular components, including cytosolic small ribosomal subunit; dendrite; and nucleus. Orthologous to human RPS3 (ribosomal protein S3); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

40S ribosomal protein S3

Orthologs:

Homo sapiens (human) : RPS3 (ribosomal protein S3) HGNC Alliance
Mus musculus (house mouse) : Rps3 (ribosomal protein S3) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rps3 (ribosomal protein S3)
Pan paniscus (bonobo/pygmy chimpanzee) : RPS3 (ribosomal protein S3)
Canis lupus familiaris (dog) : RPS3 (ribosomal protein S3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rps3 (ribosomal protein S3)
Sus scrofa (pig) : RPS3 (ribosomal protein S3)
Chlorocebus sabaeus (African green monkey) : RPS3 (ribosomal protein S3)
Heterocephalus glaber (naked mole-rat) : Rps3 (ribosomal protein S3)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPS3 (ribosomal protein S3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rps3 (ribosomal protein S3)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RPS3 (ribosomal protein S3)	Alliance	DIOPT (PANTHER\|HGNC\|Ensembl Compara\|OMA\|PhylomeDB\|OrthoFinder\|InParanoid\|OrthoInspector\|Hieranoid\|TreeFam)
Mus musculus (house mouse):	Rps3 (ribosomal protein S3)	Alliance	DIOPT (PANTHER\|OMA\|PhylomeDB\|OrthoFinder\|InParanoid\|OrthoInspector\|Hieranoid\|TreeFam)
Danio rerio (zebrafish):	rps3 (ribosomal protein S3)	Alliance	DIOPT (PANTHER\|PhylomeDB\|OrthoFinder\|InParanoid\|OrthoInspector\|Hieranoid\|TreeFam)
Caenorhabditis elegans (roundworm):	rps-3	Alliance	DIOPT (PANTHER\|Ensembl Compara\|OMA\|PhylomeDB\|OrthoFinder\|InParanoid\|OrthoInspector\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	RPS3	Alliance	DIOPT (PANTHER\|Ensembl Compara\|OMA\|PhylomeDB\|OrthoFinder\|InParanoid\|OrthoInspector\|Hieranoid\|TreeFam)
Drosophila melanogaster (fruit fly):	RpS3	Alliance	DIOPT (PANTHER\|Ensembl Compara\|OMA\|PhylomeDB\|OrthoFinder\|InParanoid\|OrthoInspector\|Hieranoid\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	164,435,868 - 164,441,167 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	164,435,878 - 164,441,167 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	170,637,728 - 170,643,027 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	156,811,470 - 156,816,770 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	156,889,883 - 156,895,183 (-)	NCBI
Celera	1	151,861,094 - 151,866,394 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

Molecular Pathway Annotations

References - curated

References - uncurated

Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Damaging Variants

Additional Information

External Database Links

Nomenclature History

RGD Curation Notes

More on Rps3
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	619888
Created:	2002-08-06
Species:	Rattus norvegicus
Last Modified:	2020-06-09
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - CTD

RGD Manual Annotations