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Gene: Clpb (caseinolytic mitochondrial matrix peptidase chaperone subunit B) Rattus norvegicus
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Symbol: Clpb
Name: caseinolytic mitochondrial matrix peptidase chaperone subunit B
RGD ID: 621328
Description: Predicted to have ATPase activity. Predicted to be involved in RIG-I signaling pathway; antiviral innate immune response; and cellular response to heat. Predicted to localize to mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with cataracts, neurologic involvement and neutropenia. Orthologous to human CLPB (caseinolytic mitochondrial matrix peptidase chaperone subunit B); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: caseinolytic peptidase B protein homolog; ClpB caseinolytic peptidase B homolog; ClpB caseinolytic peptidase B homolog (E. coli); ClpB homolog, mitochondrial AAA ATPase chaperonin; Skd3; suppressor of K+ transport defect 3; suppressor of potassium transport defect 3
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01166,739,372 - 166,866,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,739,532 - 166,866,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,929,476 - 173,055,807 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,126,512 - 159,246,279 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11159,205,528 - 159,325,296NCBI
Celera1154,107,674 - 154,230,148 (+)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clpb
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621328
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.