D1Rat348 Marker Search Result - Rat Genome Database

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Marker: D1Rat348

Symbol: D1Rat348
Previously known as: oxsts10221; R0241-D11; 
RGD ID: 42488
Expected Size: 131 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,458,412 - 126,458,554 (+)MAPPERmRatBN7.2
Rnor_6.01134,005,392 - 134,005,533NCBIRnor6.0
Rnor_5.01135,042,522 - 135,042,663UniSTSRnor5.0
RGSC_v3.41127,851,143 - 127,851,284UniSTSRGSC3.4
RGSC_v3.41127,851,142 - 127,851,284RGDRGSC3.4
RGSC_v3.11127,929,486 - 127,929,627RGD
Celera1118,592,242 - 118,592,371UniSTS
RH 3.4 Map1977.09RGD
RH 3.4 Map1977.09UniSTS
RH 2.0 Map1662.1RGD
SHRSP x BN Map162.0699RGD


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TTGATCTCTCTGCCACCACA
Reverse Primer CACTTTCTCCCCTCCTCTCC
 
Template 
GNAGGTCTTGCATGCCAGGATCCCCCTCGGCCTCAAAATGCATTATGTGTCTGAGGATAACTTT
GAACTCTTGATCTCTCTGCCACCACATTCAGCAGAATAGAACATTCTTTATATTTTACTTTTTA
AGCATGTGTGTATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGGAGAGGAGGG
GAGAAAGTGAGGGAAGAAGGAGAGGGAGACAGAGTCAGAGAGACAGTAAGCAGAGAGAGAAAGA
AAGAGGAAGAGAGGAGCGCACTCAAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTG
TTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGT
GTAAAGCCTGGGGTGCCTAATGAGTGAGTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCT
TTCCAGTCGGGANACCTGTCGTGCCAGCTGCATTAATGAATCGGCCANCGCGCGGGGAGAC

Region

Nucleotide Sequences
GenBank Nucleotide CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information