Mir9-3hg (Mir9-3 host gene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mir9-3hg (Mir9-3 host gene) Rattus norvegicus
Analyze
Symbol: Mir9-3hg
Name: Mir9-3 host gene
RGD ID: 7530616
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); all-trans-retinoic acid (ortholog); bisphenol A (ortholog)
Type: ncrna
RefSeq Status: MODEL
Previously known as: homeobox protein unc-4 homolog; LOC102548136; LOC102555346; uncharacterized LOC102548136
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,840,426 - 142,876,822 (+)NCBIGRCr8
mRatBN7.21133,431,075 - 133,469,302 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01141,224,102 - 141,258,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01142,185,280 - 142,210,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1125,498,015 - 125,532,461 (+)NCBICelera
Cytogenetic Map1q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir9-3hgRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOMir9-3hg (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of MIR9-3HG mRNACTDPMID:31961203
Mir9-3hgRatall-trans-retinoic acid multiple interactionsISOMir9-3hg (Mus musculus)6480464[bisphenol F co-treated with Tretinoin] results in decreased expression of MIR9-3HG mRNACTDPMID:30951980
Mir9-3hgRatbisphenol A decreases expressionISOMir9-3hg (Mus musculus)6480464bisphenol A results in decreased expression of MIR9-3HG mRNACTDPMID:32156529
Mir9-3hgRatbisphenol F multiple interactionsISOMir9-3hg (Mus musculus)6480464[bisphenol F co-treated with Tretinoin] results in decreased expression of MIR9-3HG mRNACTDPMID:30951980
Mir9-3hgRatethanol affects expressionISOMir9-3hg (Mus musculus)6480464Ethanol affects the expression of MIR9-3HG mRNACTDPMID:30319688

PMID:12477932  



Mir9-3hg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,840,426 - 142,876,822 (+)NCBIGRCr8
mRatBN7.21133,431,075 - 133,469,302 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01141,224,102 - 141,258,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01142,185,280 - 142,210,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1125,498,015 - 125,532,461 (+)NCBICelera
Cytogenetic Map1q31NCBI
Mir9-3hg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,149,774 - 79,184,151 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,146,444 - 79,184,154 (+)EnsemblGRCm39 Ensembl
GRCm38779,500,026 - 79,534,403 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,500,026 - 79,534,403 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,644,924 - 86,679,289 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,372,593 - 79,406,104 (+)NCBIMGSCv36mm8
Celera776,903,810 - 76,938,181 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.06NCBI

.

.
Variants in Mir9-3hg
114 total Variants

1 to 10 of 58 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat

1 to 10 of 58 rows






RefSeq Acc Id: XR_010062647
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81142,840,426 - 142,876,822 (+)NCBI


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58796 BioCyc
NCBI Gene LOC102555346 ENTREZGENE
PhenoGen Mir9-3hg PhenoGen
RNAcentral URS0000CCE2C1 RNACentral
  URS0000CCEA45 RNACentral
  URS0000CCF374 RNACentral
  URS0000CCFAF0 RNACentral
  URS0000CCFE87 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-19 Mir9-3hg  Mir9-3 host gene  LOC102555346  homeobox protein unc-4 homolog  Name and Symbol changed 629549 APPROVED
2015-11-05 LOC102555346  homeobox protein unc-4 homolog  LOC102548136  uncharacterized LOC102548136  Data merged from RGD:7565570 737654 APPROVED
2013-12-17 LOC102548136  uncharacterized LOC102548136      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-17 LOC102555346  homeobox protein unc-4 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL