LOC120100420 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120100420 (U2 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120100420
Name: U2 spliceosomal RNA
RGD ID: 41118710
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U2
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81154,557,981 - 154,558,076 (-)NCBIGRCr8
mRatBN7.21145,145,485 - 145,145,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1145,145,485 - 145,145,580 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 65 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat

1 to 10 of 65 rows





GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000102210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1145,145,485 - 145,145,580 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58522 BioCyc
Ensembl Genes ENSRNOG00000066733 Ensembl
NCBI Gene LOC120100420 ENTREZGENE
PhenoGen LOC120100420 PhenoGen
RatGTEx ENSRNOG00000066733 RatGTEx
RNAcentral URS000069A5BA RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-26 LOC120100420  U2 spliceosomal RNA  U2  U2 spliceosomal RNA  Data merged from RGD:150344827 737654 PROVISIONAL
2021-08-31 U2  U2 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120100420  U2 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL