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Gene: Smg1 (SMG1, nonsense mediated mRNA decay associated PI3K related kinase) Rattus norvegicus
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Symbol: Smg1
Name: SMG1, nonsense mediated mRNA decay associated PI3K related kinase
RGD ID: 1563508
Description: Predicted to have protein serine/threonine kinase activity and telomeric DNA binding activity. Predicted to be involved in several processes, including nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; phosphorylation; and regulation of telomere maintenance. Predicted to localize to cytoplasm and nucleoplasm. Orthologous to human SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC499250; LOC691397; LOW QUALITY PROTEIN: serine/threonine-protein kinase SMG1; RGD1563508; serine/threonine-protein kinase SMG1; similar to PI-3-kinase-related kinase SMG-1; similar to PI-3-kinase-related kinase SMG-1 isoform 2; smg-1 homolog, phosphatidylinositol 3-kinase-related kinase; smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans); SMG1 phosphatidylinositol 3-kinase-related kinase
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01187,781,577 - 187,882,833 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,784,270 - 187,883,157 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01194,735,685 - 194,836,308 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,347,187 - 176,442,991 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1170,228,494 - 170,329,833 (-)NCBICelera
Cytogenetic Map1q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smg1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563508
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.