LOC102555900 (uncharacterized LOC102555900) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC102555900 (uncharacterized LOC102555900) Rattus norvegicus
Analyze
Symbol: LOC102555900
Name: uncharacterized LOC102555900
RGD ID: 7663810
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81184,700,139 - 184,727,889 (-)NCBIGRCr8
mRatBN7.21175,279,154 - 175,293,597 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01190,671,998 - 190,680,714 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01197,597,569 - 197,607,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1173,018,827 - 173,027,461 (-)NCBICelera
Cytogenetic Map1q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in LOC102555900
103 total Variants

1 to 10 of 81 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
61326Eae6Experimental allergic encephalomyelitis QTL 65.3body mass (VT:0001259)change in body weight (CMO:0002045)1172949660181830018Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat

1 to 10 of 81 rows





1 to 16 of 16 rows
RefSeq Transcripts XR_001835958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005499421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005499422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

RefSeq Acc Id: XR_005499421
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,700,139 - 184,724,894 (-)NCBI
mRatBN7.21175,279,154 - 175,293,597 (-)NCBI
RefSeq Acc Id: XR_005499422
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,710,698 - 184,724,894 (-)NCBI
mRatBN7.21175,280,722 - 175,293,597 (-)NCBI
RefSeq Acc Id: XR_010060779
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,722,905 (-)NCBI
RefSeq Acc Id: XR_010060785
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,724,894 (-)NCBI
RefSeq Acc Id: XR_010060786
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,724,894 (-)NCBI
RefSeq Acc Id: XR_010060789
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,723,575 (-)NCBI
RefSeq Acc Id: XR_010060793
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,724,889 (-)NCBI
RefSeq Acc Id: XR_010060796
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,722,905 (-)NCBI
RefSeq Acc Id: XR_010060798
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,727,889 (-)NCBI
RefSeq Acc Id: XR_010060801
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,726,215 (-)NCBI
RefSeq Acc Id: XR_010060804
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81184,718,750 - 184,724,163 (-)NCBI


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-57604 BioCyc
NCBI Gene LOC102555900 ENTREZGENE
PhenoGen LOC102555900 PhenoGen
RNAcentral URS0000CD00EA RNACentral
  URS0000CD099C RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102555900  uncharacterized LOC102555900      Symbol and Name status set to provisional 70820 PROVISIONAL