D1Rat58 Marker Search Result - Rat Genome Database

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Marker: D1Rat58

Symbol: D1Rat58
Previously known as: oxsts6719; R037-D06; R0037-D06; 
RGD ID: 36606
Expected Size: 177 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81182,867,815 - 182,867,992 (+)Marker Load Pipeline
mRatBN7.21173,436,472 - 173,436,651 (+)MAPPERmRatBN7.2
Rnor_6.01188,809,270 - 188,809,446NCBIRnor6.0
Rnor_5.01195,751,284 - 195,751,460UniSTSRnor5.0
RGSC_v3.41177,328,495 - 177,328,671UniSTSRGSC3.4
RGSC_v3.41177,328,385 - 177,328,929RGDRGSC3.4
RGSC_v3.11177,467,741 - 177,467,917RGD
Celera1171,199,512 - 171,199,688UniSTS
RH 3.4 Map11375.6RGD
RH 3.4 Map11375.6UniSTS
RH 2.0 Map1936.0RGD
SHRSP x BN Map186.8799RGD
FHH x ACI Map183.26RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer TATCCTTCCTCCATACGGGT
Reverse Primer GTGGTGGCTCAATGTGTGAT
 
Template 
ACCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCGAGCAGTCGGGATGG
GGGAGAGTTCCATTCCAGGACTGGTGGGAAGTCATGATCTTCTCTATGTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCCTTCCTCCATACGGGTATATTGAGTGGT
GTGTGTGTGTGTGTGTGTGTGTGCATGTGTATATGTGCATGTGTGTGTGTATGTGTGTATGTGT
GTGTATGTGTGCGTGTGTGTGTGTGTGTGTGTGTACTATCACACATTGAGCCACCACAGCTCCT
TGTTTACCAGTAAGTTTGAGTTTATACAGTAAGCTAATTGTTTTATGTTAAATACCACAAGTAT
GATGGTCTGAGTTAGATTCCCAGAATCTTTCTTTAAAACCAAACCAAACCAAACCAAACCAAAC
CAAACCAAACCAAACCAAACCAACTAAACAACAAACCTGGGTGTGGTGTATGCTTGTGCTGGAG
AGGTGGAAACAAGAATTCCTGGAGCTCACAGACTGGTCAGAATAGCTTAATTAGCAGCTCCAGG
GGGTACGAGCTCGAAT
Strain, Expected Size(s)

ACI/N 169 AVN/Orl 155 BBDP/Rhw 155
BBDR/Rhw 155 BDIX/Han 171 BDVII/Cub 167
BN-Lx/Cub 179 BN/SsNHsd 179 BP/Cub 155
BUF/Pit 167 COP/OlaHsd 169 DA/PitN 169
DON/Melb 167 F344/Pit 167 FHH/Eur 155
GH/Omr 155 LE/Mol 169 LEW/Pit 155
LH/Mav 169 LN/Mav 169 LOU/CHan 155
M520/N 155 MHS/Gib 155 MNR/N 155
MNRA/N 155 MNS/Gib 155 MR/Pit 155
NEDH/K 155 NP9 169 ODU/N 155
OKA/Wsl 155 P5C 169 PVG/Pit 169
SD/Rij 155 SHR/OlaHsd 155 SHRSP/Riv 155
SR/Jr 169 SS/Jr 169 WAG/RijKyo 155
WF/Pit 169 WIST/Nhg 165 WKY/OlaHsd 155
WN/N 155 WTC/Kyo 155


GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 80 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
61326Eae6Experimental allergic encephalomyelitis QTL 65.3body mass (VT:0001259)change in body weight (CMO:0002045)1172949660181830018Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat

1 to 10 of 80 rows