Eef2k (eukaryotic elongation factor-2 kinase)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Eef2k (eukaryotic elongation factor-2 kinase) Rattus norvegicus

Analyze

Symbol:

Eef2k

Name:

eukaryotic elongation factor-2 kinase

RGD ID:

2538

Description:

Enables elongation factor-2 kinase activity. Involved in several processes, including cellular response to anoxia; positive regulation of cellular component organization; and response to peptide hormone. Located in dendritic spine and postsynaptic density. Orthologous to human EEF2K (eukaryotic elongation factor 2 kinase); PARTICIPATES IN mTOR signaling pathway; INTERACTS WITH (+)-schisandrin B; 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

calcium/calmodulin-dependent eukaryotic elongation factor 2 kinase; eEF-2 kinase; eEF-2K; elongation factor 2 kinase; eukaroytic elongation factor 2 kinase; Eukaryotic elongation factor 2 kinase; SMEF2K

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	175,393,119 - 175,454,452 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	175,393,154 - 175,455,164 (+)	Ensembl
Rnor_6.0	1	190,780,211 - 190,839,926 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	190,780,236 - 190,842,324 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	197,704,669 - 197,766,058 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	179,712,404 - 179,754,345 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	179,832,738 - 179,895,924 (+)	NCBI
Celera	1	173,143,531 - 173,184,040 (+)	NCBI		Celera
Cytogenetic Map	1	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

autistic disorder (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trimethylbenzene (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4-amino-2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

carbamazepine (ISO)

chloroprene (EXP)

choline (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

corticosterone (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

decabromodiphenyl ether (EXP)

diazinon (ISO)

dicrotophos (ISO)

diethyl maleate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

flavonoids (EXP)

folic acid (ISO)

formaldehyde (ISO)

glucose (ISO)

glycine betaine (EXP)

hydroquinone (ISO)

iron atom (EXP)

iron(0) (EXP)

ketamine (EXP)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (EXP)

paracetamol (ISO)

paraquat (ISO)

PCB138 (EXP,ISO)

phenethyl isothiocyanate (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

resveratrol (EXP,ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

Soman (EXP)

sulforaphane (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

titanium dioxide (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

tungsten (ISO)

undecane (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (EXP)

zinc sulfate (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to anoxia (IEP)

cellular response to brain-derived neurotrophic factor stimulus (IEP)

cellular response to calcium ion (IEP)

cellular response to cAMP (IEP)

cellular response to insulin stimulus (IEP)

negative regulation of apoptotic process (IMP)

positive regulation of dendritic spine morphogenesis (IMP)

positive regulation of endocytosis (IMP)

positive regulation of synapse assembly (IMP)

protein autophosphorylation (ISO,ISS)

regulation of protein autophosphorylation (ISO)

response to ischemia (IEP)

response to prolactin (IEP)

Cellular Component

dendritic spine (IDA)

postsynaptic density (IDA)

Molecular Function

ATP binding (IEA)

calcium ion binding (IEA)

calmodulin binding (ISO,ISS)

elongation factor-2 kinase activity (IMP,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mTOR signaling pathway (ISO)

References

References - curated


1.	Albarracin CT, etal., J Biol Chem. 1994 Mar 11;269(10):7772-6.
2.	Asaki C, etal., Brain Res. 2003 May 16;972(1-2):168-76.
3.	Davidkova G and Carroll RC, J Neurosci. 2007 Nov 28;27(48):13273-8.
4.	Diggle TA, etal., Biochem J. 1998 Dec 15;336 ( Pt 3):525-9.
5.	GOA data from the GO Consortium
6.	Horman S, etal., Curr Biol. 2002 Aug 20;12(16):1419-23.
7.	Horman S, etal., J Biol Chem. 2003 Oct 24;278(43):41970-6. Epub 2003 Aug 14.
8.	KEGG
9.	Li X, etal., FEBS J. 2005 Aug;272(16):4211-20.
10.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
11.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12.	Redpath NT, etal., J Biol Chem 1996 Jul 19;271(29):17547-54.
13.	RGD automated data pipeline
14.	RGD automated import pipeline for gene-chemical interactions
15.	Rose AJ, etal., J Physiol. 2009 Apr 1;587(Pt 7):1547-63. doi: 10.1113/jphysiol.2008.167528. Epub 2009 Feb 2.
16.	Ryazanov AG, etal., Proc Natl Acad Sci U S A 1997 May 13;94(10):4884-9.
17.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
18.	Takei N, etal., J Biol Chem. 2009 Sep 25;284(39):26340-8. doi: 10.1074/jbc.M109.023010. Epub 2009 Jul 22.
19.	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
20.	Terai K, etal., Mol Cell Biol. 2005 Nov;25(21):9554-75.
21.	Verpelli C, etal., J Neurosci. 2010 Apr 28;30(17):5830-42. doi: 10.1523/JNEUROSCI.0119-10.2010.

Additional References at PubMed

PMID:14709557	PMID:23184662	PMID:23640883	PMID:23812389	PMID:25943107	PMID:27005990	PMID:27317589	PMID:28205128	PMID:30737648	PMID:32569665	PMID:33191388

Genomics

Comparative Map Data

Eef2k
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	175,393,119 - 175,454,452 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	175,393,154 - 175,455,164 (+)	Ensembl
Rnor_6.0	1	190,780,211 - 190,839,926 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	190,780,236 - 190,842,324 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	197,704,669 - 197,766,058 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	179,712,404 - 179,754,345 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	179,832,738 - 179,895,924 (+)	NCBI
Celera	1	173,143,531 - 173,184,040 (+)	NCBI		Celera
Cytogenetic Map	1	q36	NCBI

EEF2K
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	22,206,278 - 22,288,738 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	22,206,278 - 22,288,738 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	22,217,599 - 22,300,059 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	22,125,093 - 22,207,567 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	16	22,125,256 - 22,205,452	NCBI
Celera	16	20,997,480 - 21,079,953 (+)	NCBI
Cytogenetic Map	16	p12.2	NCBI
HuRef	16	20,462,336 - 20,544,660 (+)	NCBI		HuRef
CHM1_1	16	22,091,272 - 22,173,735 (-)	NCBI		CHM1_1

Eef2k
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	120,441,961 - 120,506,442 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	7	120,442,054 - 120,506,673 (+)	Ensembl
GRCm38	7	120,842,642 - 120,907,219 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	120,842,831 - 120,907,450 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	127,986,397 - 128,047,515 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	120,634,032 - 120,695,150 (+)	NCBI			mm8
Celera	7	120,755,613 - 120,816,599 (+)	NCBI		Celera
Cytogenetic Map	7	F2	NCBI

Eef2k
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	865,830 - 922,765 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	865,830 - 922,765 (+)	NCBI	ChiLan1.0	ChiLan1.0

EEF2K
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	22,518,150 - 22,598,735 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	22,537,518 - 22,596,091 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	16,443,579 - 16,526,061 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

EEF2K
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	23,368,296 - 23,433,853 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	23,371,546 - 23,433,929 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	24,863,141 - 24,928,560 (-)	NCBI
ROS_Cfam_1.0	6	23,506,671 - 23,572,566 (-)	NCBI
UMICH_Zoey_3.1	6	23,308,900 - 23,374,695 (-)	NCBI
UNSW_CanFamBas_1.0	6	23,218,207 - 23,280,831 (-)	NCBI
UU_Cfam_GSD_1.0	6	23,600,299 - 23,665,719 (-)	NCBI

Eef2k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	119,053,057 - 119,105,538 (+)	NCBI
SpeTri2.0	NW_004936501	7,160,134 - 7,205,231 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EEF2K
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	23,887,125 - 23,956,373 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	23,887,120 - 23,980,231 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	24,287,297 - 24,412,626 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EEF2K
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	19,871,669 - 19,957,471 (+)	NCBI
ChlSab1.1 Ensembl	5	19,871,310 - 19,957,395 (+)	Ensembl
Vero_WHO_p1.0	NW_023666068	9,911,761 - 9,997,341 (-)	NCBI

Eef2k
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	7,606,576 - 7,668,771 (+)	NCBI

Position Markers

AI102667

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	175,432,817 - 175,432,969 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	190,819,682 - 190,819,833	NCBI	Rnor6.0
Rnor_5.0	1	197,745,820 - 197,745,971	UniSTS	Rnor5.0
RGSC_v3.4	1	179,733,272 - 179,733,423	UniSTS	RGSC3.4
Celera	1	173,164,030 - 173,164,181	UniSTS
Cytogenetic Map	1	q35	UniSTS

RH133994

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	175,439,360 - 175,439,547 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	190,826,223 - 190,826,409	NCBI	Rnor6.0
Rnor_5.0	1	197,752,355 - 197,752,541	UniSTS	Rnor5.0
RGSC_v3.4	1	179,740,875 - 179,741,061	UniSTS	RGSC3.4
Celera	1	173,170,564 - 173,170,750	UniSTS
Cytogenetic Map	1	q35	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169112897	197261052	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383635	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	174133260	196383635	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	164747558	181133855	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642722	214537671	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	156677124	176484451	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	166532971	191278129	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
61326	Eae6	Experimental allergic encephalomyelitis QTL 6	5.3		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	172949660	181830018	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	550
Count of miRNA genes:	267
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000022726
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	36	31	23	11	23	8	11	66	21	33	11	8
Low		7	26	18	8	18			8	14	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_012947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC145398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U93849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X96426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000022726 ⟹ ENSRNOP00000022726

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	175,393,154 - 175,455,164 (+)	Ensembl
Rnor_6.0 Ensembl	1	190,780,236 - 190,842,324 (+)	Ensembl

RefSeq Acc Id:

NM_012947 ⟹ NP_037079

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	175,411,618 - 175,452,831 (+)	NCBI
Rnor_6.0	1	190,798,705 - 190,839,693 (+)	NCBI
Rnor_5.0	1	197,704,669 - 197,766,058 (+)	NCBI
RGSC_v3.4	1	179,712,404 - 179,754,345 (+)	RGD
Celera	1	173,143,531 - 173,184,040 (+)	RGD

Sequence:

show sequence

ATGGCAGACGAAGACCTCATCTTCCGCCTGGAAGGTGTTGACGGTGGCGGGTCCTCCGGAGCTG
GCCGCCATGGGGACTCTGACACAGACAGTGACGATGATGAGGGCTACTTCATCTGCCCCATCAC
TGATGACCACATGTCCAACCAGAATGTCAACTCCAAAGGCCAGGGCTACTACAACAACCTACTG
AAAACGGAGTGTGGCTCCACAGGGTCACCAGCCAGCTCCTTCCACTTCAAGGAGGCCTGGAAGC
ATGCGATCGAGAAGGCCAAGCACATGCCCGACCCCTGGGCTGAATTCCATCTGGAGGACATCGC
CACAGAGCATGCTACTCGGCACAGGTACAATGCTGTCACCGGGGAGTGGCTGAAAGACGAGGTT
CTGATCAAGATGGCATCTCAGCCCTTCGGCCGTGGAGCAATGAGGGAGTGCTTCAGGACGAAGA
AACTCTCCAACTTCTTGCATGCCCAGCATTGGAAGGGGGCCTCCAACTACGTGGCAAAACGCTA
CCTCGAGCCAGTGGACAGGAGCGTGTACTTTGAGGATGTGCAGCTCCAGATGGAAGCGAAGCTC
TGGGGGGAGGAGTACAACCGGCACAAGCCCCCCAAGCAGGTAGATATCATGCAGATGTGCATCA
TTGAGCTAAAGGACAGACAAGGACAGCCCCTCTTCCACCTGGAGCACTACATTGAGGGCAAGTA
CATCAAGTATAATTCCAACTCAGGCTTTGTCCGTGATGACAACATCAGACTAACACCACAGGCC
TTCAGCCATTTCACATTTGAACGTTCTGGTCATCAGCTGATTGTAGTGGACATCCAGGGTGTGG
GCGACCTTTATACTGACCCACAGATCCACACTGAGAAAGGCACTGACTTTGGAGATGGTAACCT
TGGTGTCCGGGGAATGGCTCTCTTCTTCTACTCTCATGCCTGCAACCGTATTTGCCAGAGCATG
GGCCTTGCGCCCTTTGACCTCTCCCCACGGGAGCAGGATGCCGTGAACCAGAGCACCAAGCTGT
TGCAATCAGCCAAGACCATCTTGAGGGGGACAGAGGAGAAGTGTGGGAGTCCCCGCATAAGGAC
ACTCTCTGGCAGCCGGCCCCCCTTGCTCCTTCGCCTGTCAGAGAACTCTGGGGATGAGAACATG
AGTGATGTGACCTTTGACTCTCTGCCTTCCTCCCCGTCTTCAGCCACACCACACAGCCAGAAGT
TGGACCACCTCCATTGGCCAGTGTTTGGTGACCTCGATAACATGGGCCCTAGAGACCATGACCG
CATGGACAATCACCGGGACTCTGAGAATAGTGGGGACAGTGGGTATCCAAGCGAGAAGCGAAGT
GACCTGGATGATCCTGAGCCCCGAGAACACGGCCACTCCAATGGCAACCGAAGGCCTGAATCTG
ATGAGGACAGCCTGGGCAGCTCTGGACGGGTCTGTGTGGAGACGTGGAACCTGCTCAATCCCTC
CCGCCTGCACCTGCCCAGGCCCTCGGCCGTGGCCCTAGAAGTGCAAAGGTTAAATGCTCTGGAC
CTTGGAAGGAAAATCGGGAAGTCTGTTTTGGGGAAGGTCCATCTGGCCATGGTACGGTACCACG
AGGGCGGGCGCTTCTGCGAGAAGGATGAGGAATGGGATCAAGAGTCTGCCATCTTCCATCTGGA
GCATGCAGCCGACCTGGGAGAACTGGAGGCCATCGTGGGCCTAGGCCTCATGTACTCTCAGCTG
CCCCACCACATCCTGGCTGATGTCTCTCTGGAGGAGACAGAAGAGAACAAGACAAAAGGCTTTG
ATTACCTCCTGAAGGCCGCAGAAGCTGGTGACAGGCAGTCCATGATTTTAGTGGCTCGAGCTTT
TGACACCGGCCTGAACCTCAGCCCAGACAGGTGTCAAGACTGGTCGGAAGCCTTACACTGGTAC
AACACGGCCCTGGAGACGACGGACTGCGATGAAGGCGGGGAGTATGACGGAATACAGGACGAGC
CCCAGTATGCACTGCTGGCCAGGGAGGCAGAGATGTTGCTCACCGGTGGATTTGGACTGGACAA
GAACCCCCAAAGATCAGGAGACTTGTACACCCAGGCAGCCGAGGCAGCAATGGAAGCCATGAAG
GGCCGGCTAGCCAACCAGTACTATGAGAAGGCGGAAGAGGCCTGGGCGCAAATGGAGGAATAA

hide sequence

RefSeq Acc Id:

XM_006230156 ⟹ XP_006230218

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	175,393,119 - 175,454,446 (+)	NCBI
Rnor_6.0	1	190,780,211 - 190,839,911 (+)	NCBI
Rnor_5.0	1	197,704,669 - 197,766,058 (+)	NCBI

Sequence:

show sequence

CCCCAGCCACAACAGCCCCAGCTCCAGCCGGCGCTCCGCTCCAGCGCTCGGACGTCTCCAGGCA
CCCCACTGCGGCTGCGGGCCTGGCTCTCTGTCGCGTGCGCTCGTACCCCAGGATTCTCCTCCCG
CCCTGCACCCTGGAGCGTCCGGCCGCCAGCCTCTGCCAGCTCCTCGGGATCCTTGCGGCCGTGG
GCAGCGGCTGTCGCGCCTGTCCCACTTTGGGAGGACCATCCTTGCTGCGCGTGCGCAGTAACTT
CGGCTGCACGTGCGCATTAACTCTGGCTGCACAGCGAAGCCCTGGGATAACACCGGCGCCCCCG
CAACATGGCAGACGAAGACCTCATCTTCCGCCTGGAAGGTGTTGACGGTGGCGGGTCCTCCGGA
GCTGGCCGCCATGGGGACTCTGACACAGACAGTGACGATGATGAGGGCTACTTCATCTGCCCCA
TCACTGATGACCACATGTCCAACCAGAATGTCAACTCCAAAGGCCAGGGCTACTACAACAACCT
ACTGAAAACGGAGTGTGGCTCCACAGGGTCACCAGCCAGCTCCTTCCACTTCAAGGAGGCCTGG
AAGCATGCGATCGAGAAGGCCAAGCACATGCCCGACCCCTGGGCTGAATTCCATCTGGAGGACA
TCGCCACAGAGCATGCTACTCGGCACAGGTACAATGCTGTCACCGGGGAGTGGCTGAAAGACGA
GGTTCTGATCAAGATGGCATCTCAGCCCTTCGGCCGTGGAGCAATGAGGGAGTGCTTCAGGACG
AAGAAACTCTCCAACTTCTTGCATGCCCAGCATTGGAAGGGGGCCTCCAACTACGTGGCAAAAC
GCTACCTCGAGCCAGTGGACAGGAGCGTGTACTTTGAGGATGTGCAGCTCCAGATGGAAGCGAA
GCTCTGGGGGGAGGAGTACAACCGGCACAAGCCCCCCAAGCAGGTAGATATCATGCAGATGTGC
ATCATTGAGCTAAAGGACAGACAAGGACAGCCCCTCTTCCACCTGGAGCACTACATTGAGGGCA
AGTACATCAAGTATAATTCCAACTCAGGCTTTGTCCGTGATGACAACATCAGACTAACACCACA
GGCCTTCAGCCATTTCACATTTGAACGTTCTGGTCATCAGCTGATTGTAGTGGACATCCAGGGT
GTGGGCGACCTTTATACTGACCCACAGATCCACACTGAGAAAGGCACTGACTTTGGAGATGGTA
ACCTTGGTGTCCGGGGAATGGCTCTCTTCTTCTACTCTCATGCCTGCAACCGTATTTGCCAGAG
CATGGGCCTTGCGCCCTTTGACCTCTCCCCACGGGAGCAGGATGCCGTGAACCAGAGCACCAAG
CTGTTGCAATCAGCCAAGACCATCTTGAGGGGGACAGAGGAGAAGTGTGGGAGTCCCCGCATAA
GGACACTCTCTGGCAGCCGGCCCCCCTTGCTCCTTCGCCTGTCAGAGAACTCTGGGGATGAGAA
CATGAGTGATGTGACCTTTGACTCTCTGCCTTCCTCCCCGTCTTCAGCCACACCACACAGCCAG
AAGTTGGACCACCTCCATTGGCCAGTGTTTGGTGACCTCGATAACATGGGCCCTAGAGACCATG
ACCGCATGGACAATCACCGGGACTCTGAGAATAGTGGGGACAGTGGGTATCCAAGCGAGAAGCG
AAGTGACCTGGATGATCCTGAGCCCCGAGAACACGGCCACTCCAATGGCAACCGAAGGCCTGAA
TCTGATGAGGACAGCCTGGGCAGCTCTGGACGGGTCTGTGTGGAGACGTGGAACCTGCTCAATC
CCTCCCGCCTGCACCTGCCCAGGCCCTCGGCCGTGGCCCTAGAAGTGCAAAGGTTAAATGCTCT
GGACCTTGGAAGGAAAATCGGGAAGTCTGTTTTGGGGAAGGTCCATCTGGCCATGGTACGGTAC
CACGAGGGCGGGCGCTTCTGCGAGAAGGATGAGGAATGGGATCAAGAGTCTGCCATCTTCCATC
TGGAGCATGCAGCCGACCTGGGAGAACTGGAGGCCATCGTGGGCCTAGGCCTCATGTACTCTCA
GCTGCCCCACCACATCCTGGCTGATGTCTCTCTGGAGGAGACAGAAGAGAACAAGACAAAAGGC
TTTGATTACCTCCTGAAGGCCGCAGAAGCTGGTGACAGGCAGTCCATGATTTTAGTGGCTCGAG
CTTTTGACACCGGCCTGAACCTCAGCCCAGACAGGTGTCAAGACTGGTCGGAAGCCTTACACTG
GTACAACACGGCCCTGGAGACGACGGACTGCGATGAAGGCGGGGAGTATGACGGAATACAGGAC
GAGCCCCAGTATGCACTGCTGGCCAGGGAGGCAGAGATGTTGCTCACCGGTGGATTTGGACTGG
ACAAGAACCCCCAAAGATCAGGAGACTTGTACACCCAGGCAGCCGAGGCAGCAATGGAAGCCAT
GAAGGGCCGGCTAGCCAACCAGTACTATGAGAAGGCGGAAGAGGCCTGGGCGCAAATGGAGGAA
TAACTGTCCACAGGATCACTGCCGAGGAGAAGGGCTGGGGAGGGGAGGATGGGACCCATTTCTT
TTGGGAGGGGAGAAGTAGTTTTACTATGGTATAAATTCACTTTTGTATTGCCTTTTTTTGACTC
TTGACAGTCTTTGCAGCTGGCAGAGACATTATAACTGCCCTTTTAGGGGTGGTATTTTGGGGGA
GTGGGGGGTTGAAGATGCAGCCTAATGAA

hide sequence

RefSeq Acc Id:

XM_006230157 ⟹ XP_006230219

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	175,393,824 - 175,454,452 (+)	NCBI
Rnor_6.0	1	190,780,465 - 190,839,926 (+)	NCBI
Rnor_5.0	1	197,704,669 - 197,766,058 (+)	NCBI

Sequence:

show sequence

CGCCTCCAGCTGCAGTGGCCCCCCGAAAGGAGCTTCTTTGGTTGCAGAGCTTCCGCGGGGCTCA
GTATTTGCGCCTATAAAGAAAAGAATGAAAGACGCTGGCAAGCGATGGGCGGGCGCCGTTCGGG
TTGCACCAGGCAGCGCACGCGGGCTTCCGCCAGGGTCTCTCCTTCGTGTCTCGGAGAACCCGCC
TGTCCCTCTGAAGCGCTCAAGCAGCATTCCCCTCACGAGGTTCCCCCACACTAGAGGCCTGTGC
GAGCCTCAGTCGAGGAATCTCGAGATCTGTGCAGCATACGCCCTTGCAGCATTGTTGTTGAGGG
AGTTGGGGTGTTGGCAGGCGTTGGAGACTTGTGCGCCAAGGGGCTGAGCATTCATATGCAGTTG
GTGGCGCGGGGGCGGGGACCTCCCGGGTAAGCCTCGGGCCAAATCTAGCTTGTGTCTGTTAAGG
GAATTGCGGGGAACCTGCCCAGCTGCGCCCTGTGTGTGACTGATCGCGTGTATTTCGGAGGAGT
GAGATCTGACTTGGGGATTCTCCTTGGGGGCGCTGGGACCACTGAACAGATTTTACGGAGGAGA
ACGCCGAGGTCCAAAGAGGCCCCCAGACCCACGGAGGCTAGGACCATCCTTGCTGCGCGTGCGC
AGTAACTTCGGCTGCACGTGCGCATTAACTCTGGCTGCACAGCGAAGCCCTGGGATAACACCGG
CGCCCCCGCAACATGGCAGACGAAGACCTCATCTTCCGCCTGGAAGGTGTTGACGGTGGCGGGT
CCTCCGGAGCTGGCCGCCATGGGGACTCTGACACAGACAGTGACGATGATGAGGGCTACTTCAT
CTGCCCCATCACTGATGACCACATGTCCAACCAGAATGTCAACTCCAAAGGCCAGGGCTACTAC
AACAACCTACTGAAAACGGAGTGTGGCTCCACAGGGTCACCAGCCAGCTCCTTCCACTTCAAGG
AGGCCTGGAAGCATGCGATCGAGAAGGCCAAGCACATGCCCGACCCCTGGGCTGAATTCCATCT
GGAGGACATCGCCACAGAGCATGCTACTCGGCACAGGTACAATGCTGTCACCGGGGAGTGGCTG
AAAGACGAGGTTCTGATCAAGATGGCATCTCAGCCCTTCGGCCGTGGAGCAATGAGGGAGTGCT
TCAGGACGAAGAAACTCTCCAACTTCTTGCATGCCCAGCATTGGAAGGGGGCCTCCAACTACGT
GGCAAAACGCTACCTCGAGCCAGTGGACAGGAGCGTGTACTTTGAGGATGTGCAGCTCCAGATG
GAAGCGAAGCTCTGGGGGGAGGAGTACAACCGGCACAAGCCCCCCAAGCAGGTAGATATCATGC
AGATGTGCATCATTGAGCTAAAGGACAGACAAGGACAGCCCCTCTTCCACCTGGAGCACTACAT
TGAGGGCAAGTACATCAAGTATAATTCCAACTCAGGCTTTGTCCGTGATGACAACATCAGACTA
ACACCACAGGCCTTCAGCCATTTCACATTTGAACGTTCTGGTCATCAGCTGATTGTAGTGGACA
TCCAGGGTGTGGGCGACCTTTATACTGACCCACAGATCCACACTGAGAAAGGCACTGACTTTGG
AGATGGTAACCTTGGTGTCCGGGGAATGGCTCTCTTCTTCTACTCTCATGCCTGCAACCGTATT
TGCCAGAGCATGGGCCTTGCGCCCTTTGACCTCTCCCCACGGGAGCAGGATGCCGTGAACCAGA
GCACCAAGCTGTTGCAATCAGCCAAGACCATCTTGAGGGGGACAGAGGAGAAGTGTGGGAGTCC
CCGCATAAGGACACTCTCTGGCAGCCGGCCCCCCTTGCTCCTTCGCCTGTCAGAGAACTCTGGG
GATGAGAACATGAGTGATGTGACCTTTGACTCTCTGCCTTCCTCCCCGTCTTCAGCCACACCAC
ACAGCCAGAAGTTGGACCACCTCCATTGGCCAGTGTTTGGTGACCTCGATAACATGGGCCCTAG
AGACCATGACCGCATGGACAATCACCGGGACTCTGAGAATAGTGGGGACAGTGGGTATCCAAGC
GAGAAGCGAAGTGACCTGGATGATCCTGAGCCCCGAGAACACGGCCACTCCAATGGCAACCGAA
GGCCTGAATCTGATGAGGACAGCCTGGGCAGCTCTGGACGGGTCTGTGTGGAGACGTGGAACCT
GCTCAATCCCTCCCGCCTGCACCTGCCCAGGCCCTCGGCCGTGGCCCTAGAAGTGCAAAGGTTA
AATGCTCTGGACCTTGGAAGGAAAATCGGGAAGTCTGTTTTGGGGAAGGTCCATCTGGCCATGG
TACGGTACCACGAGGGCGGGCGCTTCTGCGAGAAGGATGAGGAATGGGATCAAGAGTCTGCCAT
CTTCCATCTGGAGCATGCAGCCGACCTGGGAGAACTGGAGGCCATCGTGGGCCTAGGCCTCATG
TACTCTCAGCTGCCCCACCACATCCTGGCTGATGTCTCTCTGGAGGAGACAGAAGAGAACAAGA
CAAAAGGCTTTGATTACCTCCTGAAGGCCGCAGAAGCTGGTGACAGGCAGTCCATGATTTTAGT
GGCTCGAGCTTTTGACACCGGCCTGAACCTCAGCCCAGACAGGTGTCAAGACTGGTCGGAAGCC
TTACACTGGTACAACACGGCCCTGGAGACGACGGACTGCGATGAAGGCGGGGAGTATGACGGAA
TACAGGACGAGCCCCAGTATGCACTGCTGGCCAGGGAGGCAGAGATGTTGCTCACCGGTGGATT
TGGACTGGACAAGAACCCCCAAAGATCAGGAGACTTGTACACCCAGGCAGCCGAGGCAGCAATG
GAAGCCATGAAGGGCCGGCTAGCCAACCAGTACTATGAGAAGGCGGAAGAGGCCTGGGCGCAAA
TGGAGGAATAACTGTCCACAGGATCACTGCCGAGGAGAAGGGCTGGGGAGGGGAGGATGGGACC
CATTTCTTTTGGGAGGGGAGAAGTAGTTTTACTATGGTATAAATTCACTTTTGTATTGCCTTTT
TTTGACTCTTGACAGTCTTTGCAGCTGGCAGAGACATTATAACTGCCCTTTTAGGGGTGGTATT
TTGGGGGAGTGGGGGGTTGAAGATGCAGCCTAATGAATTCTTTTTCCCCCTG

hide sequence

RefSeq Acc Id:

XM_006230158 ⟹ XP_006230220

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	175,403,809 - 175,454,452 (+)	NCBI
Rnor_6.0	1	190,789,781 - 190,839,926 (+)	NCBI
Rnor_5.0	1	197,704,669 - 197,766,058 (+)	NCBI

Sequence:

show sequence

AATAGCTGTTCCCTGAGGACCCCTAAAAATCTTGACTTTGCTGCTACTGGGACATCTAGGTCCC
CTTCTGGAGAGATCCTGGCTTCTAGAGAATAGCTGCTCCCTGAGGACCCCTGAAGAATCTTGGC
TTTGCTGCTACTCGGACATCCAGGTCCCCTTTGGCTAATATTCAAGGCTCAGCCTCACAATTTA
CAAAGCTGAAGATGAGTCTTGTGCCGTACTAGAGAGCTAACTGACGGCTATGCTTCCACATCCC
AGGTTCATGGTATGGCAGGGAGAGAGGAAGGACGTAGAACTCTTCGGAGAAACTTCTCCTCAGG
TGTGTCTAGAACTCTCCGGAGAAACTTCTCCTCAGGTGTGTCTGGCTAGAAGTGGGTACCTAAG
TGAGTAACTTCTGGAAATTTCTCATTTCCTGTGAACTGGGGTCTCTCTCCTTCCTTGGGTTTGG
GAATCCATAATAGGTTGAGTTTGCTAGGAGGCTGGGGTCTGAGGTAAGGTCCCAGGTACTGTCT
GGTGTGCAGAGTGAGGTCGGCCACCAAGCTGCAACTCTGCATTGAGCTGGTTTTCCTAAAGTGT
CCCTCCCTAGCAGGGGACCTTGTCATAAGGAATATGACCTTTTATGCTATGAGAGAGAGAGAGC
ATTGCTGGAGCCAATATAATTAGCAACTTGAAGTAAGGGGAGGAAAGAAAAGGACAATAAATCA
CCTTACAGGTTTGATATCAAAGTACGGTGTTTGTGAGTCCGTGACTAGGATGCTGCCCCATGAT
ATGAGACCTATGTGCTGTGCCTCTGCCAGCCTCTGGATCTGGCTTGTACTTCATGGCCTATCAC
AGTTGCCTAAACGGTAGAGGCACCTGCCGCCAAGCCTACTGACGTGTTCAGTCCCTGGAACCCA
CATGGTAGGAGGAGACTCCCACTTGTGTCCCCGGACCTCCACGTGTTCTTTGCAGAGAGCCCCC
TGACCCAAATTAAACAAACTGAATGTTAAAACACCACCAACAAACTAACCCTTCCTCAAAGTTG
TACACAGCCTTTCTGCTTCTGTTTCATCAAGCTTGGGTGTGTGACGTTGGGAAACCATTTCCAC
AGAGCTGATAAACCTCCCCTCTGAAGAGAGAAGCTCAGAAAGCTACAAGATTAACTGGGCTCCT
GAGCTTATAGACAGTGAGCAGTTACTGGGGACAGACACTGCAGCCAGCAAGGTAGCAAGATAGC
CCACAAGGAGCTCGGGGTTGCAGCTTTCCTGAGTCCTCAAGAGTGCTGGGGCTGGCTTTAGCTG
ATGCAGCTGCTGCTCCTGACCATCCTTGCTGCGCGTGCGCAGTAACTTCGGCTGCACGTGCGCA
TTAACTCTGGCTGCACAGCGAAGCCCTGGGATAACACCGGCGCCCCCGCAACATGGCAGACGAA
GACCTCATCTTCCGCCTGGAAGGTGTTGACGGTGGCGGGTCCTCCGGAGCTGGCCGCCATGGGG
ACTCTGACACAGACAGTGACGATGATGAGGGCTACTTCATCTGCCCCATCACTGATGACCACAT
GTCCAACCAGAATGTCAACTCCAAAGGCCAGGGCTACTACAACAACCTACTGAAAACGGAGTGT
GGCTCCACAGGGTCACCAGCCAGCTCCTTCCACTTCAAGGAGGCCTGGAAGCATGCGATCGAGA
AGGCCAAGCACATGCCCGACCCCTGGGCTGAATTCCATCTGGAGGACATCGCCACAGAGCATGC
TACTCGGCACAGGTACAATGCTGTCACCGGGGAGTGGCTGAAAGACGAGGTTCTGATCAAGATG
GCATCTCAGCCCTTCGGCCGTGGAGCAATGAGGGAGTGCTTCAGGACGAAGAAACTCTCCAACT
TCTTGCATGCCCAGCATTGGAAGGGGGCCTCCAACTACGTGGCAAAACGCTACCTCGAGCCAGT
GGACAGGAGCGTGTACTTTGAGGATGTGCAGCTCCAGATGGAAGCGAAGCTCTGGGGGGAGGAG
TACAACCGGCACAAGCCCCCCAAGCAGGTAGATATCATGCAGATGTGCATCATTGAGCTAAAGG
ACAGACAAGGACAGCCCCTCTTCCACCTGGAGCACTACATTGAGGGCAAGTACATCAAGTATAA
TTCCAACTCAGGCTTTGTCCGTGATGACAACATCAGACTAACACCACAGGCCTTCAGCCATTTC
ACATTTGAACGTTCTGGTCATCAGCTGATTGTAGTGGACATCCAGGGTGTGGGCGACCTTTATA
CTGACCCACAGATCCACACTGAGAAAGGCACTGACTTTGGAGATGGTAACCTTGGTGTCCGGGG
AATGGCTCTCTTCTTCTACTCTCATGCCTGCAACCGTATTTGCCAGAGCATGGGCCTTGCGCCC
TTTGACCTCTCCCCACGGGAGCAGGATGCCGTGAACCAGAGCACCAAGCTGTTGCAATCAGCCA
AGACCATCTTGAGGGGGACAGAGGAGAAGTGTGGGAGTCCCCGCATAAGGACACTCTCTGGCAG
CCGGCCCCCCTTGCTCCTTCGCCTGTCAGAGAACTCTGGGGATGAGAACATGAGTGATGTGACC
TTTGACTCTCTGCCTTCCTCCCCGTCTTCAGCCACACCACACAGCCAGAAGTTGGACCACCTCC
ATTGGCCAGTGTTTGGTGACCTCGATAACATGGGCCCTAGAGACCATGACCGCATGGACAATCA
CCGGGACTCTGAGAATAGTGGGGACAGTGGGTATCCAAGCGAGAAGCGAAGTGACCTGGATGAT
CCTGAGCCCCGAGAACACGGCCACTCCAATGGCAACCGAAGGCCTGAATCTGATGAGGACAGCC
TGGGCAGCTCTGGACGGGTCTGTGTGGAGACGTGGAACCTGCTCAATCCCTCCCGCCTGCACCT
GCCCAGGCCCTCGGCCGTGGCCCTAGAAGTGCAAAGGTTAAATGCTCTGGACCTTGGAAGGAAA
ATCGGGAAGTCTGTTTTGGGGAAGGTCCATCTGGCCATGGTACGGTACCACGAGGGCGGGCGCT
TCTGCGAGAAGGATGAGGAATGGGATCAAGAGTCTGCCATCTTCCATCTGGAGCATGCAGCCGA
CCTGGGAGAACTGGAGGCCATCGTGGGCCTAGGCCTCATGTACTCTCAGCTGCCCCACCACATC
CTGGCTGATGTCTCTCTGGAGGAGACAGAAGAGAACAAGACAAAAGGCTTTGATTACCTCCTGA
AGGCCGCAGAAGCTGGTGACAGGCAGTCCATGATTTTAGTGGCTCGAGCTTTTGACACCGGCCT
GAACCTCAGCCCAGACAGGTGTCAAGACTGGTCGGAAGCCTTACACTGGTACAACACGGCCCTG
GAGACGACGGACTGCGATGAAGGCGGGGAGTATGACGGAATACAGGACGAGCCCCAGTATGCAC
TGCTGGCCAGGGAGGCAGAGATGTTGCTCACCGGTGGATTTGGACTGGACAAGAACCCCCAAAG
ATCAGGAGACTTGTACACCCAGGCAGCCGAGGCAGCAATGGAAGCCATGAAGGGCCGGCTAGCC
AACCAGTACTATGAGAAGGCGGAAGAGGCCTGGGCGCAAATGGAGGAATAACTGTCCACAGGAT
CACTGCCGAGGAGAAGGGCTGGGGAGGGGAGGATGGGACCCATTTCTTTTGGGAGGGGAGAAGT
AGTTTTACTATGGTATAAATTCACTTTTGTATTGCCTTTTTTTGACTCTTGACAGTCTTTGCAG
CTGGCAGAGACATTATAACTGCCCTTTTAGGGGTGGTATTTTGGGGGAGTGGGGGGTTGAAGAT
GCAGCCTAATGAATTCTTTTTCCCCCTG

hide sequence

RefSeq Acc Id:

XM_039101738 ⟹ XP_038957666

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	175,393,119 - 175,454,446 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_037079	(Get FASTA)	NCBI Sequence Viewer
	XP_006230218	(Get FASTA)	NCBI Sequence Viewer
	XP_006230219	(Get FASTA)	NCBI Sequence Viewer
	XP_006230220	(Get FASTA)	NCBI Sequence Viewer
	XP_038957666	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB58272	(Get FASTA)	NCBI Sequence Viewer
	AAH61825	(Get FASTA)	NCBI Sequence Viewer
	CAA65286	(Get FASTA)	NCBI Sequence Viewer
	EDM17599	(Get FASTA)	NCBI Sequence Viewer
	EDM17600	(Get FASTA)	NCBI Sequence Viewer
	EDM17601	(Get FASTA)	NCBI Sequence Viewer
	EDM17602	(Get FASTA)	NCBI Sequence Viewer
	EDM17603	(Get FASTA)	NCBI Sequence Viewer
	EDM17604	(Get FASTA)	NCBI Sequence Viewer
	P70531	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_037079 ⟸ NM_012947

- UniProtKB:

P70531 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MADEDLIFRLEGVDGGGSSGAGRHGDSDTDSDDDEGYFICPITDDHMSNQNVNSKGQGYYNNLL
KTECGSTGSPASSFHFKEAWKHAIEKAKHMPDPWAEFHLEDIATEHATRHRYNAVTGEWLKDEV
LIKMASQPFGRGAMRECFRTKKLSNFLHAQHWKGASNYVAKRYLEPVDRSVYFEDVQLQMEAKL
WGEEYNRHKPPKQVDIMQMCIIELKDRQGQPLFHLEHYIEGKYIKYNSNSGFVRDDNIRLTPQA
FSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTEKGTDFGDGNLGVRGMALFFYSHACNRICQSM
GLAPFDLSPREQDAVNQSTKLLQSAKTILRGTEEKCGSPRIRTLSGSRPPLLLRLSENSGDENM
SDVTFDSLPSSPSSATPHSQKLDHLHWPVFGDLDNMGPRDHDRMDNHRDSENSGDSGYPSEKRS
DLDDPEPREHGHSNGNRRPESDEDSLGSSGRVCVETWNLLNPSRLHLPRPSAVALEVQRLNALD
LGRKIGKSVLGKVHLAMVRYHEGGRFCEKDEEWDQESAIFHLEHAADLGELEAIVGLGLMYSQL
PHHILADVSLEETEENKTKGFDYLLKAAEAGDRQSMILVARAFDTGLNLSPDRCQDWSEALHWY
NTALETTDCDEGGEYDGIQDEPQYALLAREAEMLLTGGFGLDKNPQRSGDLYTQAAEAAMEAMK
GRLANQYYEKAEEAWAQMEE

hide sequence

RefSeq Acc Id:	XP_006230218 ⟸ XM_006230156
- Peptide Label:	isoform X1
- UniProtKB:	P70531 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MADEDLIFRLEGVDGGGSSGAGRHGDSDTDSDDDEGYFICPITDDHMSNQNVNSKGQGYYNNLL KTECGSTGSPASSFHFKEAWKHAIEKAKHMPDPWAEFHLEDIATEHATRHRYNAVTGEWLKDEV LIKMASQPFGRGAMRECFRTKKLSNFLHAQHWKGASNYVAKRYLEPVDRSVYFEDVQLQMEAKL WGEEYNRHKPPKQVDIMQMCIIELKDRQGQPLFHLEHYIEGKYIKYNSNSGFVRDDNIRLTPQA FSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTEKGTDFGDGNLGVRGMALFFYSHACNRICQSM GLAPFDLSPREQDAVNQSTKLLQSAKTILRGTEEKCGSPRIRTLSGSRPPLLLRLSENSGDENM SDVTFDSLPSSPSSATPHSQKLDHLHWPVFGDLDNMGPRDHDRMDNHRDSENSGDSGYPSEKRS DLDDPEPREHGHSNGNRRPESDEDSLGSSGRVCVETWNLLNPSRLHLPRPSAVALEVQRLNALD LGRKIGKSVLGKVHLAMVRYHEGGRFCEKDEEWDQESAIFHLEHAADLGELEAIVGLGLMYSQL PHHILADVSLEETEENKTKGFDYLLKAAEAGDRQSMILVARAFDTGLNLSPDRCQDWSEALHWY NTALETTDCDEGGEYDGIQDEPQYALLAREAEMLLTGGFGLDKNPQRSGDLYTQAAEAAMEAMK GRLANQYYEKAEEAWAQMEE hide sequence

RefSeq Acc Id:	XP_006230219 ⟸ XM_006230157
- Peptide Label:	isoform X1
- UniProtKB:	P70531 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MADEDLIFRLEGVDGGGSSGAGRHGDSDTDSDDDEGYFICPITDDHMSNQNVNSKGQGYYNNLL KTECGSTGSPASSFHFKEAWKHAIEKAKHMPDPWAEFHLEDIATEHATRHRYNAVTGEWLKDEV LIKMASQPFGRGAMRECFRTKKLSNFLHAQHWKGASNYVAKRYLEPVDRSVYFEDVQLQMEAKL WGEEYNRHKPPKQVDIMQMCIIELKDRQGQPLFHLEHYIEGKYIKYNSNSGFVRDDNIRLTPQA FSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTEKGTDFGDGNLGVRGMALFFYSHACNRICQSM GLAPFDLSPREQDAVNQSTKLLQSAKTILRGTEEKCGSPRIRTLSGSRPPLLLRLSENSGDENM SDVTFDSLPSSPSSATPHSQKLDHLHWPVFGDLDNMGPRDHDRMDNHRDSENSGDSGYPSEKRS DLDDPEPREHGHSNGNRRPESDEDSLGSSGRVCVETWNLLNPSRLHLPRPSAVALEVQRLNALD LGRKIGKSVLGKVHLAMVRYHEGGRFCEKDEEWDQESAIFHLEHAADLGELEAIVGLGLMYSQL PHHILADVSLEETEENKTKGFDYLLKAAEAGDRQSMILVARAFDTGLNLSPDRCQDWSEALHWY NTALETTDCDEGGEYDGIQDEPQYALLAREAEMLLTGGFGLDKNPQRSGDLYTQAAEAAMEAMK GRLANQYYEKAEEAWAQMEE hide sequence

RefSeq Acc Id:	XP_006230220 ⟸ XM_006230158
- Peptide Label:	isoform X1
- UniProtKB:	P70531 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MADEDLIFRLEGVDGGGSSGAGRHGDSDTDSDDDEGYFICPITDDHMSNQNVNSKGQGYYNNLL KTECGSTGSPASSFHFKEAWKHAIEKAKHMPDPWAEFHLEDIATEHATRHRYNAVTGEWLKDEV LIKMASQPFGRGAMRECFRTKKLSNFLHAQHWKGASNYVAKRYLEPVDRSVYFEDVQLQMEAKL WGEEYNRHKPPKQVDIMQMCIIELKDRQGQPLFHLEHYIEGKYIKYNSNSGFVRDDNIRLTPQA FSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTEKGTDFGDGNLGVRGMALFFYSHACNRICQSM GLAPFDLSPREQDAVNQSTKLLQSAKTILRGTEEKCGSPRIRTLSGSRPPLLLRLSENSGDENM SDVTFDSLPSSPSSATPHSQKLDHLHWPVFGDLDNMGPRDHDRMDNHRDSENSGDSGYPSEKRS DLDDPEPREHGHSNGNRRPESDEDSLGSSGRVCVETWNLLNPSRLHLPRPSAVALEVQRLNALD LGRKIGKSVLGKVHLAMVRYHEGGRFCEKDEEWDQESAIFHLEHAADLGELEAIVGLGLMYSQL PHHILADVSLEETEENKTKGFDYLLKAAEAGDRQSMILVARAFDTGLNLSPDRCQDWSEALHWY NTALETTDCDEGGEYDGIQDEPQYALLAREAEMLLTGGFGLDKNPQRSGDLYTQAAEAAMEAMK GRLANQYYEKAEEAWAQMEE hide sequence

RefSeq Acc Id:

ENSRNOP00000022726 ⟸ ENSRNOT00000022726

RefSeq Acc Id:	XP_038957666 ⟸ XM_039101738
- Peptide Label:	isoform X2

Protein Domains

Alpha-type protein kinase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690363

Promoter ID:

EPDNEW_R888

Type:

initiation region

Name:

Eef2k_1

Description:

eukaryotic elongation factor-2 kinase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	190,780,219 - 190,780,279	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2538	AgrOrtholog
Ensembl Genes	ENSRNOG00000016448	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000022726	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022726	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599075	IMAGE-MGC_LOAD
InterPro	eEF-2K	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MHCK_EF2_kinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sel1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:25435	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72540	IMAGE-MGC_LOAD
NCBI Gene	25435	ENTREZGENE
Pfam	Alpha_kinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sel1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Eef2k	PhenoGen
PIRSF	Elongation_factor_2_kinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ALPHA_KINASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	Alpha_kinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC204086
UniProt	EF2K_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6P757_RAT	UniProtKB/TrEMBL
UniProt Secondary	O09089	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Eef2k	Eukaryotic elongation factor 2 kinase			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)