Umod (uromodulin) - Rat Genome Database

Name: Umod
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Umod (uromodulin) Rattus norvegicus

Analyze

Symbol:

Umod

Name:

uromodulin

RGD ID:

3940

Description:

Predicted to have IgG binding activity and extracellular matrix structural constituent. Involved in response to organic substance. Localizes to several cellular components, including Golgi apparatus; apical part of cell; and membrane raft. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human UMOD (uromodulin); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; acrylic acid.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

tamm-Horsfall urinary glycoprotein; THP; Urmodulin (Tamm-Horsfall protein)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UMOD (uromodulin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Umod (uromodulin)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Umod (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UMOD (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UMOD (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Umod (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UMOD (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	UMOD (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Umod (uromodulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GP2 (glycoprotein 2)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Umod (uromodulin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	UMOD (uromodulin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	si:dkey-239b22.2	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER)

Allele / Splice:

Umod^em1Mcwi

Genetic Models:

SS-Umod^em1Mcwi

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	173,816,341 - 173,829,681 (-)	NCBI
Rnor_6.0 Ensembl	1	189,186,026 - 189,199,376 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	189,186,027 - 189,199,939 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	196,127,939 - 196,141,822 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	177,729,212 - 177,742,552 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	177,868,457 - 177,881,798 (-)	NCBI
Celera	1	171,569,071 - 171,582,409 (-)	NCBI		Celera
Cytogenetic Map	1	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Autosomal Dominant Tubulointerstitial Kidney Disease 1 (ISO)

chronic kidney disease (ISO)

essential hypertension (ISO)

Experimental Diabetes Mellitus (IEP)

familial juvenile hyperuricemic nephropathy (ISS)

genetic disease (ISO)

hypertension (ISO)

kidney disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4-phenylbutyric acid (ISO)

6-propyl-2-thiouracil (EXP)

acetazolamide (ISO)

acrylamide (EXP)

acrylic acid (EXP)

allopurinol (ISO)

ammonium chloride (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

ciguatoxin CTX1B (ISO)

clofibrate (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

Deoxycorticosterone acetate (EXP)

doxorubicin (EXP)

ethylene glycol (EXP)

flavonoids (EXP)

mangiferin (ISO)

nitroglycerin (EXP)

paracetamol (ISO)

Potassium 2,6-dihydroxytriazinecarboxylate (ISO)

potassium chloride (EXP)

probenecid (ISO)

pterostilbene (ISO)

quercetin (ISO)

stilben-4-ol (ISO)

stilbenoid (ISO)

tetrachloromethane (EXP)

trans-piceid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

allantoin metabolic process (IEA,ISO)

apoptotic process (ISO)

apoptotic signaling pathway (IEA,ISO)

autophagy (IEA,ISO)

calcium ion homeostasis (ISO)

cellular calcium ion homeostasis (IEA,ISO)

cellular chloride ion homeostasis (IEA,ISO)

cellular phosphate ion homeostasis (IEA,ISO)

cellular response to unfolded protein (IEA,ISO)

cellular sodium ion homeostasis (IEA,ISO)

chaperone-mediated protein folding (IEA,ISO)

chemical homeostasis (ISO)

chloride ion homeostasis (ISO)

citric acid secretion (IEA,ISO)

collecting duct development (IEA,ISO)

connective tissue replacement (IEA,ISO)

creatinine homeostasis (IEA,ISO)

defense response to Gram-negative bacterium (IEA,ISO)

endoplasmic reticulum organization (IEA,ISO)

excretion (IEA,ISO)

gene expression (ISO)

glomerular filtration (IEA,ISO)

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (IEA,ISO)

inflammatory response (IEA,ISO)

ion homeostasis (ISO)

juxtaglomerular apparatus development (IEA,ISO)

kidney development (ISO)

leukocyte cell-cell adhesion (IEA,ISO)

lipid metabolic process (IEA,ISO)

loop of Henle development (ISO)

metanephric ascending thin limb development (IEA,ISO)

metanephric distal convoluted tubule development (IEA,ISO)

metanephric thick ascending limb development (IEA,ISO)

micturition (IEA,ISO)

multicellular organismal homeostasis (ISO)

multicellular organismal response to stress (ISO)

neutrophil migration (IBA,IEA,ISO)

organ or tissue specific immune response (IEA,ISO)

peptidyl-threonine phosphorylation (IEA,ISO)

phosphate ion homeostasis (ISO)

potassium ion homeostasis (ISO)

protein localization to vacuole (IEA,ISO)

protein phosphorylation (ISO)

protein transport into plasma membrane raft (IEA,ISO)

regulation of protein transport (IEA,ISO)

regulation of urine volume (IEA,ISO)

renal sodium ion absorption (IEA,ISO)

renal water homeostasis (IEA,ISO)

response to drug (IEA,ISO)

response to endoplasmic reticulum stress (ISO)

response to lipopolysaccharide (IEA,ISO)

response to organic substance (IEP)

response to unfolded protein (ISO)

response to water deprivation (IEA,ISO)

RNA splicing (IEA,ISO)

sodium ion homeostasis (ISO)

tumor necrosis factor-mediated signaling pathway (IEA,ISO)

ubiquitin-dependent ERAD pathway (IEA,ISO)

urate catabolic process (IEA,ISO)

urate salt excretion (IEA,ISO)

water homeostasis (ISO)

Cellular Component

anchored component of membrane (IEA,ISO,ISS)

apical part of cell (IDA)

apical plasma membrane (IBA,IEA,ISO,ISS)

basolateral plasma membrane (IEA,ISO,ISS)

cell surface (IBA)

ciliary membrane (IEA)

cilium (ISO,ISS)

cytoplasmic vesicle (IDA,TAS)

endoplasmic reticulum (IEA,ISO)

extracellular space (IBA,IDA,IEA,ISO)

Golgi apparatus (IDA)

membrane raft (IDA)

plasma membrane (ISO)

spindle pole (IEA,ISO,ISS)

Molecular Function

calcium ion binding (IEA)

extracellular matrix structural constituent (IBA)

IgG binding (IEA,ISO)

protein binding (IPI,ISO)

References

References - curated


1.	Bachmann S, etal., Histochemistry. 1985;83(6):531-8.
2.	Fukuoka S, etal., Proc Natl Acad Sci U S A 1992 Feb 15;89(4):1189-93.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	GOA data from the GO Consortium
5.	Hart TC, etal., J Med Genet 2002 Dec;39(12):882-92.
6.	Hu E, etal., Exp Nephrol 2001 Mar-Apr;9(2):156-64.
7.	Huang HS, etal., Kidney Int. 2006 Aug;70(4):699-710.
8.	MGD data from the GO Consortium
9.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	OMIM Disease Annotation Pipeline
11.	RGD automated data pipeline
12.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	RGD automated import pipeline for gene-chemical interactions
14.	RGD comprehensive gene curation
15.	Schmitt R, etal., Histochem Cell Biol 2004 Apr;121(4):319-27. Epub 2004 Mar 9.
16.	Shen HL, etal., Mol Cell Biochem. 2009 Jan;321(1-2):73-83. Epub 2008 Oct 2.
17.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
18.	Thorup C, etal., J Diabetes Complications. 2000 Jan-Feb;14(1):46-52.
19.	Welker P, etal., Am J Physiol Regul Integr Comp Physiol. 2007 Mar;292(3):R1328-37. Epub 2006 Nov 2.
20.	Yu H, etal., Gene Expr 1994;4(1-2):63-75.

Additional References at PubMed

PMID:2249987	PMID:7028707	PMID:14665435	PMID:14871399	PMID:15327412	PMID:15489334	PMID:15522986	PMID:15992786	PMID:17264314	PMID:17634395	PMID:17898038	PMID:18025791
PMID:18618131	PMID:19056867	PMID:20172860	PMID:20591941	PMID:20798515	PMID:21397062	PMID:21737451	PMID:22237754	PMID:23376485	PMID:23533145	PMID:28348009	PMID:28785050
PMID:28990932	PMID:29145399

Genomics

Comparative Map Data

Umod
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	173,816,341 - 173,829,681 (-)	NCBI
Rnor_6.0 Ensembl	1	189,186,026 - 189,199,376 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	189,186,027 - 189,199,939 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	196,127,939 - 196,141,822 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	177,729,212 - 177,742,552 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	177,868,457 - 177,881,798 (-)	NCBI
Celera	1	171,569,071 - 171,582,409 (-)	NCBI		Celera
Cytogenetic Map	1	q35	NCBI

UMOD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	20,333,052 - 20,356,301 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	20,333,051 - 20,356,301 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	20,344,373 - 20,364,037 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	16	20,344,373 - 20,364,200 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	20,251,874 - 20,271,538 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	16	20,251,874 - 20,271,538	NCBI
Celera	16	19,493,555 - 19,513,244 (-)	NCBI
Cytogenetic Map	16	p12.3	NCBI
HuRef	16	18,881,007 - 18,900,856 (-)	NCBI		HuRef
CHM1_1	16	20,432,269 - 20,452,397 (-)	NCBI		CHM1_1

Umod
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	119,061,931 - 119,078,485 (-)	NCBI	GRCm39		mm39
GRCm38	7	119,462,708 - 119,479,262 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	119,462,711 - 119,479,282 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	126,606,380 - 126,622,769 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	119,254,013 - 119,270,404 (-)	NCBI			mm8
Celera	7	119,386,384 - 119,402,859 (-)	NCBI		Celera
Cytogenetic Map	7	F2	NCBI
cM Map	7	63.88	NCBI

Umod
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	3,985,308 - 3,999,598 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	3,986,936 - 4,001,155 (-)	NCBI	ChiLan1.0	ChiLan1.0

UMOD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	20,429,822 - 20,449,266 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	20,430,085 - 20,449,121 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	17,960,456 - 17,980,338 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

UMOD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	6	24,991,459 - 25,006,735 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	6	24,991,459 - 25,006,735 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Umod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936501	5,833,391 - 5,846,021 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UMOD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	25,473,162 - 25,492,283 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	25,473,048 - 25,492,286 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	26,195,083 - 26,205,810 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UMOD
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	18,620,927 - 18,641,312 (-)	NCBI
ChlSab1.1 Ensembl	5	18,619,895 - 18,638,719 (-)	Ensembl

Umod
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	3,639,955 - 3,654,026 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	99983293	216325819	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	153655976	198655976	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	175447029	220447029	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	175447029	220447029	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	184419946	215097919	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	184419946	215097919	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	126240667	217054291	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	156446196	274977688	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	156446196	214277437	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	161321152	273792054	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	153655976	198655976	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	137787261	236763528	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	99983293	216213510	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	99983293	198656062	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	156446196	243311614	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	175447162	197963658	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	167394665	278228889	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	100131562	236763528	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	153656062	198656062	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130779148	198585664	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	167394665	191883991	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130779320	219238476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	130779148	199254774	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	153834077	232297227	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	189170900	234170900	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	189170900	234170900	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	189170900	234170900	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	189170900	234170900	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	189170900	234170900	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	189170900	234170900	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	189170900	234170900	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	189170900	234170900	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	161321256	273791893	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	130779148	199254774	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	161321256	273791893	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	122614824	201146953	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	108986301	219232156	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	219232156	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	108986301	238830534	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	278228889	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	108986301	219232156	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	167394665	219232156	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	161784169	219232156	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	161784169	219232156	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	161784169	219232156	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	161784169	278228889	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	185390068	230390068	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	278228889	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	144395993	189395993	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	163796316	282763074	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	130779148	199254774	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	174905700	264802994	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	174905700	233490237	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	167394665	238830534	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	177235071	208786962	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	169971964	214971964	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	161784422	246226103	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	94201400	197187904	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	188850303	233850303	Rat
61326	Eae6	Experimental allergic encephalomyelitis QTL 6	5.3		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	188289244	198656062	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	137787261	236763528	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	167027868	212027868	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	175462885	220462885	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	154337847	215828102	Rat
61379	Bp44	Blood pressure QTL 44	19.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	156446783	189514504	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	166577232	211577232	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	144395993	189395993	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	144395993	189395993	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	106002252	202571904	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	122614824	262664716	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	144634295	241482368	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	125875758	262433692	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat

Genetic Models

This gene Umod is modified in the following models/strains

SS-Umod^em1Mcwi

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	63
Count of miRNA genes:	61
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000021027
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High										19
Medium										6
Low		4	21	7	15	7	7	7	8	6	9	7	7
Below cutoff	1	10	5	3	1	3	1	2	5	4	11	1	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF110024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M63510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S75960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000021027 ⟹ ENSRNOP00000021027

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	189,186,026 - 189,199,376 (-)	Ensembl

RefSeq Acc Id:

NM_017082 ⟹ NP_058778

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	173,816,341 - 173,829,681 (-)	NCBI
Rnor_6.0	1	189,186,028 - 189,199,368 (-)	NCBI
Rnor_5.0	1	196,127,939 - 196,141,822 (-)	NCBI
RGSC_v3.4	1	177,729,212 - 177,742,552 (-)	RGD
Celera	1	171,569,071 - 171,582,409 (-)	RGD

Sequence:

show sequence

GGAATTCCGGGCAGAGCACAAAGGATGGGGCAGCTGCTCTCTTTGACCTGGCTGCTGCTGGTTA
TGGTGGTAACTCCCTGGTTCACTGTAGCTGGAGCCAATGACTCACCAGAAGCAAGAAGGTGTTC
TGAATGCCACGACAATGCCACCTGTGTGTTGGATGGGGTGGTCACCACATGCTCCTGCCAGGCA
GGCTTCACTGGAGATGGGCTGGTGTGTGAGGACATAGATGAGTGTGCCACCCCGTGGACTCACA
ACTGCTCCAACAGCATCTGCATGAACACACTGGGCTCCTACGAGTGCTCCTGTCAGGATGGCTT
TCGTCTGACGCCTGGGCTGGGCTGCATTGATGTGAATGAGTGCACAGAGCAGGGGCTCAGTAAC
TGTCATTCCCTGGCTACCTGTGTCAACACGGAAGGCAGCTACTCATGCGTGTGTCCCAAGGGCT
ATAGAGGGGATGGTTGGTACTGTGAGTGCTCCCCTGGCTTCTGTGAGCCAGGGCTGGACTGCTT
GCCTCAGGGTCCCAGTGGAAAGCTGGTGTGCCAAGACCCCTGCAATGTCTATGAAACCCTGACT
GAGTACTGGCGCAGCACAGACTATGGTGCCGGCTACTCCTGTGACTCAGATATGCACGGCTGGT
ACCGGTTCACAGGCCAGGGTGGCGTTCGCATGGCTGAGACCTGTGTGCCCGTACTGAGGTGCAA
CACGGCTGCACCCATGTGGCTCAATGGCTCGCATCCTTCGAGCAGAGAGGGCATTGTGAGCCGC
ACAGCCTGCGCACACTGGAGCGACCACTGCTGCCTGTGGTCCACAGAGATCCAGGTGAAGGCCT
GCCCTGGTGGCTTCTATGTTTACAACTTGACAGAGCCCCCTGAGTGCAATCTGGCTTACTGCAC
CGATCCTAGCTCCGTGGAGGGGACTTGCGAAGAATGCGGGGTAGATGAAGACTGCGTATCTGAT
AACGGCAGATGGCGCTGCCAGTGTAAACAGGACTTCAACGTTACAGATGTCTCCCTCCTGGAGC
ACAGGCTGGAGTGTGAGGCCAATGAAATCAAGATATCCCTCAGCAAGTGCCAGCTACAGAGTTT
GGGCTTTATGAAGGTCTTCATGTACCTGAATGACAGACAGTGCTCAGGCTTCAGTGAGAGGGGT
GAACGAGACTGGATGTCCATAGTGACTCCTGCCAGGGATGGTCCCTGTGGGACAGTATTGAGGA
GAAATGAAACCCACGCCACCTACAGCAACACCCTCTACCTGGCAAGTGAGATCATCATCAGGGA
TATCAACATCAGAATCAACTTTGAATGCTCTTACCCTCTGGACATGAAAGTCAGTCTGAAGACC
TCCCTACAGCCTATGGTTAGTGCCTTGAACATCAGCTTGGGTGGGACAGGCAAGTTCACTGTGC
AGATGGCACTGTTCCAGAACCCTACCTACACACAGCCCTACCAAGGTCCTTCTGTGATGCTCTC
CACTGAGGCTTTTCTGTATGTGGGCACCATGCTGGATGGGGGTGACTTGTCCCGGTTTGTACTG
CTAATGACCAACTGCTATGCCACACCCAGTAGCAACTCCACGGACCCTGTAAAATACTTCATTA
TCCAGGACAGATGTCCACATACAGAAGATACAACCATTCAGGTGACAGAGAATGGCGAGTCCTC
TCAGGCCCGGTTCTCTATTCAGATGTTCCGGTTTGCAGGAAACTCCGACCTTGTCTACCTTCAC
TGCGAGGTGTACCTGTGTGACACTATGAGTGAGCAGTGTAAACCTACCTGTTCTGGTACTAGAT
ATCGAAGTGGGAACTTCATAGATCAGACCCGTGTCCTGAACTTGGGTCCCATCACACGACAAGG
TGTCCAGGCCTCAGTGTCCAAGGCTGCTTCCAGCAACTTGGGGTTCCTGAGCATCTGGCTGCTG
CTGTTTCTCTCAGCTACTTTGACCCTGATGGTTCATTGATGGAAAACAGAAAACCTGGTGTGGC
TCCCAGTTCACTTCCTGCTGGCCAGGAGTGGGGATGCAGGCTGGTAAGCAGCCAGGAGAGAGGG
AGCTCACACTGCCTCCAGCTTGCACTTACCCTTTTCCTTTAACCCTCACCATCAAAACCGAGTT
GATATCTTTCAATGCTGCTGATTCTTCAACTGGAACTTGTAATGTGTCTGTACATGAAGCCCCT
GTCTCTTTAAGGAATGTATCAAAATAATAAGTTTAAAACAATCCGGAATTC

hide sequence

RefSeq Acc Id:

XM_006230107 ⟹ XP_006230169

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	189,186,027 - 189,199,939 (-)	NCBI
Rnor_5.0	1	196,127,939 - 196,141,822 (-)	NCBI

Sequence:

show sequence

GAGAATAATTGGAGGGAGAGGGCCAGCCAAGGGCAGACATATATATATATATATATATTGATCA
CAGGCACTTACTTGTGAATGGACCAGTCCTGTCCTGGGTTCAGGTGTTTCCAGGACCAGAAATA
GAGGGCAGAGCACAAAGGATGGGGCAGCTGCTCTCTTTGACCTGGCTGCTGCTGGTTATGGTGG
TAACTCCCTGGTTCACTGTAGCTGGAGCCAATGACTCACCAGAAGCAAGAAGGTGTTCTGAATG
CCACGACAATGCCACCTGTGTGTTGGATGGGGTGGTCACCACATGCTCCTGCCAGGCAGGCTTC
ACTGGAGATGGGCTGGTGTGTGAGGACATAGATGAGTGTGCCACCCCGTGGACTCACAACTGCT
CCAACAGCATCTGCATGAACACACTGGGCTCCTACGAGTGCTCCTGTCAGGATGGCTTTCGTCT
GACGCCTGGGCTGGGCTGCATTGATGTGAATGAGTGCACAGAGCAGGGGCTCAGTAACTGTCAT
TCCCTGGCTACCTGTGTCAACACGGAAGGCAGCTACTCATGCGTGTGTCCCAAGGGCTATAGAG
GGGATGGTTGGTACTGTGAGTGCTCCCCTGGCTCCTGTGAGCCAGGGCTGGACTGCTTGCCTCA
GGGTCCCAGTGGAAAGCTGGTGTGCCAAGACCCCTGCAATGTCTATGAAACCCTGACTGAGTAC
TGGCGCAGCACAGACTATGGTGCCGGCTACTCCTGTGACTCAGATATGCACGGCTGGTACCGGT
TCACAGGCCAGGGTGGCGTTCGCATGGCTGAGACCTGTGTGCCCGTACTGAGGTGCAACACGGC
TGCACCCATGTGGCTCAATGGCTCGCATCCTTCGAGCAGAGAGGGCATTGTGAGCCGCACAGCC
TGCGCACACTGGAGCGACCACTGCTGCCTGTGGTCCACAGAGATCCAGGTGAAGGCCTGCCCTG
GTGGCTTCTATGTTTACAACTTGACAGAGCCCCCTGAGTGCAATCTGGCTTACTGCACCGATCC
TAGCTCCGTGGAGGGGACTTGCGAAGAATGCGGGGTAGATGAAGACTGCGTATCTGATAACGGC
AGATGGCGCTGCCAGTGTAAACAGGACTTCAACATTACAGATGTCTCCCTCCTGGAGCACAGGC
TGGAGTGTGAGGCCAATGAAATCAAGATATCCCTCAGCAAGTGCCAGCTACAGAGTTTGGGCTT
TATGAAGGTCTTCATGTACCTGAATGACAGACAGTGCTCAGGCTTCAGTGAGAGGGGTGAACGA
GACTGGATGTCCATAGTGACTCCTGCCAGGGATGGTCCCTGTGGGACAGTATTGAGGAGAAATG
AAACCCACGCCACCTACAGCAACACCCTCTACCTGGCAAGTGAGATCATCATCAGGGATATCAA
CATCAGAATCAACTTTGAATGCTCTTACCCTCTGGACATGAAAGTCAGTCTGAAGACCTCCCTA
CAGCCTATGGTTAGTGCCTTGAACATCAGCTTGGGTGGGACAGGCAAGTTCACTGTGCAGATGG
CACTGTTCCAGAACCCTACCTACACACAGCCCTACCAAGGTCCTTCTGTGATGCTCTCCACTGA
GGCTTTTCTGTATGTGGGCACCATGCTGGATGGGGGTGACTTGTCCCGGTTTGTACTGCTAATG
ACCAACTGCTATGCCACACCCAGTAGCAACTCCACGGACCCTGTAAAATACTTCATTATCCAGG
ACAGATGTCCACATACAGAAGATACAACCATTCAGGTGACAGAGAATGGCGAGTCCTCTCAGGC
CCGGTTCTCTATTCAGATGTTCCGGTTTGCAGGAAACTCCGACCTTGTCTACCTTCACTGCGAG
GTGTACCTGTGTGACACTATGAGTGAGCAGTGTAAACCTACCTGTTCTGGTACTAGATATCGAA
GTGGGAACTTCATAGATCAGACCCGTGTCCTGAACTTGGGTCCCATCACACGACAAGGTGTCCA
GGCCTCAGTGTCCAAGGCTGCTTCCAGCAACTTGGGGTTCCTGAGCATCTGGCTGCTGCTGTTT
CTCTCAGCTACTTTGACCCTGATGGTTCATTGATGGAAAACAGAAAACCTGGTGTGGCTCCCAG
TTCACTTCCTGCTGGCCAGGAGTGGGGATGCAGGCTGGTAAGCAGCCAGGAGAGAGGGAGCTCA
CACTGCCTCCAGCTTGCACTTACCCTTTTCCTTTAACCCTCACCATCAAAACCGAGTTGATATC
TTTCAATGCTGCTGATTCTTCAACTGGAACTTGTAATGTGTCTGTACATGAAGCCCCTGTCTCT
TTAAGGAATGTATCAAAATAATAAGTTTAAAACAATCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_058778	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA42319	(Get FASTA)	NCBI Sequence Viewer
	AAB33313	(Get FASTA)	NCBI Sequence Viewer
	AAF16873	(Get FASTA)	NCBI Sequence Viewer
	AAH81814	(Get FASTA)	NCBI Sequence Viewer
	EDM17668	(Get FASTA)	NCBI Sequence Viewer
	EDM17669	(Get FASTA)	NCBI Sequence Viewer
	EDM17670	(Get FASTA)	NCBI Sequence Viewer
	EDM17671	(Get FASTA)	NCBI Sequence Viewer
	EDM17672	(Get FASTA)	NCBI Sequence Viewer
	P27590	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_058778 ⟸ NM_017082

- Peptide Label:

precursor

- Sequence:

show sequence

MGQLLSLTWLLLVMVVTPWFTVAGANDSPEARRCSECHDNATCVLDGVVTTCSCQAGFTGDGLV
CEDIDECATPWTHNCSNSICMNTLGSYECSCQDGFRLTPGLGCIDVNECTEQGLSNCHSLATCV
NTEGSYSCVCPKGYRGDGWYCECSPGFCEPGLDCLPQGPSGKLVCQDPCNVYETLTEYWRSTDY
GAGYSCDSDMHGWYRFTGQGGVRMAETCVPVLRCNTAAPMWLNGSHPSSREGIVSRTACAHWSD
HCCLWSTEIQVKACPGGFYVYNLTEPPECNLAYCTDPSSVEGTCEECGVDEDCVSDNGRWRCQC
KQDFNVTDVSLLEHRLECEANEIKISLSKCQLQSLGFMKVFMYLNDRQCSGFSERGERDWMSIV
TPARDGPCGTVLRRNETHATYSNTLYLASEIIIRDINIRINFECSYPLDMKVSLKTSLQPMVSA
LNISLGGTGKFTVQMALFQNPTYTQPYQGPSVMLSTEAFLYVGTMLDGGDLSRFVLLMTNCYAT
PSSNSTDPVKYFIIQDRCPHTEDTTIQVTENGESSQARFSIQMFRFAGNSDLVYLHCEVYLCDT
MSEQCKPTCSGTRYRSGNFIDQTRVLNLGPITRQGVQASVSKAASSNLGFLSIWLLLFLSATLT
LMVH

hide sequence

RefSeq Acc Id:

XP_006230169 ⟸ XM_006230107

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGQLLSLTWLLLVMVVTPWFTVAGANDSPEARRCSECHDNATCVLDGVVTTCSCQAGFTGDGLV
CEDIDECATPWTHNCSNSICMNTLGSYECSCQDGFRLTPGLGCIDVNECTEQGLSNCHSLATCV
NTEGSYSCVCPKGYRGDGWYCECSPGSCEPGLDCLPQGPSGKLVCQDPCNVYETLTEYWRSTDY
GAGYSCDSDMHGWYRFTGQGGVRMAETCVPVLRCNTAAPMWLNGSHPSSREGIVSRTACAHWSD
HCCLWSTEIQVKACPGGFYVYNLTEPPECNLAYCTDPSSVEGTCEECGVDEDCVSDNGRWRCQC
KQDFNITDVSLLEHRLECEANEIKISLSKCQLQSLGFMKVFMYLNDRQCSGFSERGERDWMSIV
TPARDGPCGTVLRRNETHATYSNTLYLASEIIIRDINIRINFECSYPLDMKVSLKTSLQPMVSA
LNISLGGTGKFTVQMALFQNPTYTQPYQGPSVMLSTEAFLYVGTMLDGGDLSRFVLLMTNCYAT
PSSNSTDPVKYFIIQDRCPHTEDTTIQVTENGESSQARFSIQMFRFAGNSDLVYLHCEVYLCDT
MSEQCKPTCSGTRYRSGNFIDQTRVLNLGPITRQGVQASVSKAASSNLGFLSIWLLLFLSATLT
LMVH

hide sequence

RefSeq Acc Id:

ENSRNOP00000021027 ⟸ ENSRNOT00000021027

Protein Domains

EGF-like ZP

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	196139757	196139758	C	G	snv	SBH/Ygl (MCW), FHH/EurMcwi (KNAW), WKY/NCrl (KNAW), WKY/N (KNAW), WKY/Gcrc (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcvPrin (KNAW), SHR/OlaIpcv (KNAW), SHR/NHsd (KNAW), SHR/NCrlPrin (KNAW), MHS/Gib (KNAW), SBH/Ygl (KNAW), BBDP/WorN (KNAW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), LEW/NCrl (KNAW), LEW/Crl (KNAW), LE/Stm (SOLiD) (KNAW), LE/Stm (Illumina) (KNAW), FHL/EurMcwi (KNAW), WKY/NHsd (KNAW)
1	196139762	196139763	G	A	snv	SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), WN/N (KNAW), MNS/Gib (KNAW), M520/N (KNAW), DA/BklArbNsi (KNAW), SBN/Ygl (KNAW), ACI/EurMcwi (KNAW), ACI/N (KNAW), WAG/Rij (KNAW), SS/JrHsdMcwi (KNAW), SS/Jr (KNAW), SR/JrHsd (KNAW), MR/N (KNAW), LN/MavRrrc (KNAW), LL/MavRrrc (KNAW), LH/MavRrrc (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), GH/OmrMcwi (MCW), ZFDM (KyushuU), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	189197845	189197846	C	G	snv	FHH/EurMcwi (RGD), WKY/Gcrc (RGD), WKY/NCrl (RGD), SHRSP/Gcrc (RGD), SHR/NHsd (RGD), SBH/Ygl (RGD), MHS/Gib (RGD), LEW/NCrlBR (RGD), LEW/Crl (RGD), LE/Stm (RGD), WKY/NHsd (RGD), BBDP/Wor (RGD), WKY/N (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), SBH/Ygl (MCW)
1	189197850	189197851	G	A	snv	ACI/EurMcwi (RGD), ACI/EurMcwi (MCW), SS/Jr (RGD), SBN/Ygl (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), WN/N (MCW), SR/JrHsd (RGD), MR/N (MCW), M520/N (MCW), ACI/N (MCW), CDS, CDR, SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), LL/MavRrrc (RGD), LN/MavRrrc (RGD), LH/MavRrrc (RGD), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), MNS/Gib (RGD)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3940	AgrOrtholog
Ensembl Genes	ENSRNOG00000015557	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000021027	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021027	ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7109450	IMAGE-MGC_LOAD
InterPro	EGF-like_Ca-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_Ca-bd_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Growth_fac_rcpt_cys_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZP_dom_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:25128	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93496	IMAGE-MGC_LOAD
NCBI Gene	25128	ENTREZGENE
Pfam	EGF_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_CA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zona_pellucida	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Umod	PhenoGen
PRINTS	ZPELLUCIDA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ASX_HYDROXYL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_CA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZP_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZP_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	EGF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF_CA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00241	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF57184	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JSP1_RAT	UniProtKB/TrEMBL
	P27590	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q642D6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2003-04-09	Umod	uromodulin		Urmodulin (Tamm-Horsfall protein)	Name updated	629478	APPROVED
2002-06-10	Umod	Urmodulin (Tamm-Horsfall protein)			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_product	member of the GP-2/THP family of glycosylphosphatidylinositol (GPI)-linked glycoproteins	730085

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM