Rps15a (ribosomal protein S15a) - Rat Genome Database

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Gene: Rps15a (ribosomal protein S15a) Rattus norvegicus
Analyze
Symbol: Rps15a
Name: ribosomal protein S15a
RGD ID: 619939
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of cell cycle; positive regulation of cell population proliferation; and response to virus. Localizes to cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 20. Orthologous to human RPS15A (ribosomal protein S15a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 40S ribosomal protein S15a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC681330   Rps15a-ps1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21172,420,151 - 172,427,021 (-)NCBI
Rnor_6.0 Ensembl1187,759,480 - 187,766,709 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01187,759,865 - 187,766,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01194,713,988 - 194,720,867 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,321,901 - 176,327,789 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11176,461,146 - 176,467,032 (-)NCBI
Celera1170,206,665 - 170,212,554 (-)NCBICelera
Cytogenetic Map1q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrobenzenesulfonic acid  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3,3'-diindolylmethane  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
artesunate  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
clobetasol  (ISO)
clofibric acid  (EXP)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nimesulide  (EXP)
ochratoxin A  (EXP)
ozone  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP)
sodium fluoride  (EXP,ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
tolcapone  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8706699   PMID:15108328   PMID:15489334   PMID:15883184   PMID:18614015   PMID:19946888   PMID:20458337   PMID:22658674   PMID:22681889   PMID:23376485   PMID:23979707   PMID:24625528  
PMID:25931508  


Genomics

Comparative Map Data
Rps15a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21172,420,151 - 172,427,021 (-)NCBI
Rnor_6.0 Ensembl1187,759,480 - 187,766,709 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01187,759,865 - 187,766,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01194,713,988 - 194,720,867 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,321,901 - 176,327,789 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11176,461,146 - 176,467,032 (-)NCBI
Celera1170,206,665 - 170,212,554 (-)NCBICelera
Cytogenetic Map1q35NCBI
RPS15A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1618,781,295 - 18,790,383 (-)EnsemblGRCh38hg38GRCh38
GRCh381618,781,295 - 18,790,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371618,792,617 - 18,801,656 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361618,701,778 - 18,709,157 (-)NCBINCBI36hg18NCBI36
Build 341618,701,789 - 18,709,157NCBI
Celera1617,948,012 - 17,955,392 (-)NCBI
Cytogenetic Map16p12.3NCBI
HuRef1617,336,473 - 17,343,840 (-)NCBIHuRef
CHM1_11618,881,758 - 18,889,137 (-)NCBICHM1_1
Rps15a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397117,703,597 - 117,715,370 (-)NCBIGRCm39mm39
GRCm39 Ensembl7117,703,595 - 117,715,411 (-)Ensembl
GRCm387118,104,374 - 118,116,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,104,372 - 118,116,188 (-)EnsemblGRCm38mm10GRCm38
MGSCv377125,247,888 - 125,259,661 (-)NCBIGRCm37mm9NCBIm37
MGSCv367117,895,523 - 117,907,296 (-)NCBImm8
Celera7118,055,217 - 118,066,974 (-)NCBICelera
Cytogenetic Map7F1NCBI
Rps15a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554422,530,838 - 2,535,421 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554422,530,838 - 2,535,421 (-)NCBIChiLan1.0ChiLan1.0
RPS15A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01619,489,898 - 19,497,202 (+)NCBIMhudiblu_PPA_v0panPan3
RPS15A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1626,322,478 - 26,329,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl626,322,569 - 26,329,668 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha627,688,370 - 27,695,424 (+)NCBI
ROS_Cfam_1.0626,482,742 - 26,489,790 (+)NCBI
UMICH_Zoey_3.1626,281,670 - 26,288,712 (+)NCBI
UNSW_CanFamBas_1.0626,177,362 - 26,184,407 (+)NCBI
UU_Cfam_GSD_1.0626,566,174 - 26,573,227 (+)NCBI
Rps15a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,552,972 - 116,558,411 (-)NCBI
SpeTri2.0NW_0049365014,650,832 - 4,656,223 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS15A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl326,776,780 - 26,784,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1326,776,661 - 26,783,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPS15A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,082,307 - 17,100,719 (-)NCBI
Rps15a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247822,231,281 - 2,236,078 (-)NCBI

Position Markers
RH128261  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q35UniSTS
Cytogenetic Map8q24UniSTS
RH131675  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21172,419,890 - 172,420,071 (+)MAPPER
Rnor_6.01187,759,605 - 187,759,785NCBIRnor6.0
Rnor_5.01194,713,738 - 194,713,918UniSTSRnor5.0
RGSC_v3.41176,321,641 - 176,321,821UniSTSRGSC3.4
Celera1170,206,405 - 170,206,585UniSTS
RH 3.4 Map11563.6UniSTS
Cytogenetic Map1q35UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)194201400197187904Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)199983293188289386Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)199983293198656062Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)199983293216213510Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)199983293216325819Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1100131562236763528Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1106002252202571904Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1108986301219232156Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1108986301219232156Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1108986301238830534Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1122614824201146953Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1124603592188289386Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1126240667217054291Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779148198585664Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1130779148199254774Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1130779148199254774Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1130779148199254774Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779320219238476Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1137787261236763528Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1137787261236763528Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1144395993189395993Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1144634295241482368Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1153655976198655976Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1153655976198655976Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1153656062198656062Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1153834077232297227Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1154337847215828102Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1156446196214277437Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1156446196243311614Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1156446783188289244Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1156446783189514504Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1161784169219232156Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1161784169219232156Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1161784169219232156Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169219232156Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight as percentage of body weight (CMO:0000141)1166100317188289386Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1166577232211577232Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1167027868212027868Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1167394665191883991Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1167394665219232156Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1167394665238830534Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1169971964214971964Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700233490237Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1175447029220447029Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1175447029220447029Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1175447162197963658Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1175462885220462885Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1177235071208786962Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1184419946215097919Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1184419946215097919Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1185390068230390068Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:49
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000024678
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 8 3 2
Medium 1 43 57 41 16 41 8 11 74 35 41 9 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000024678   ⟹   ENSRNOP00000024678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1187,759,901 - 187,765,744 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092282   ⟹   ENSRNOP00000075906
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1187,759,480 - 187,766,709 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092316
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1187,764,778 - 187,766,690 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092513   ⟹   ENSRNOP00000075747
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1187,759,865 - 187,766,670 (-)Ensembl
RefSeq Acc Id: NM_053982   ⟹   NP_446434
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21172,420,151 - 172,426,040 (-)NCBI
Rnor_6.01187,759,865 - 187,765,753 (-)NCBI
Rnor_5.01194,713,988 - 194,720,867 (-)NCBI
RGSC_v3.41176,321,901 - 176,327,789 (-)RGD
Celera1170,206,665 - 170,212,554 (-)RGD
Sequence:
RefSeq Acc Id: XM_006230097   ⟹   XP_006230159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21172,420,151 - 172,427,021 (-)NCBI
Rnor_6.01187,759,865 - 187,766,734 (-)NCBI
Rnor_5.01194,713,988 - 194,720,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230098   ⟹   XP_006230160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21172,420,151 - 172,426,970 (-)NCBI
Rnor_6.01187,759,865 - 187,766,670 (-)NCBI
Rnor_5.01194,713,988 - 194,720,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112732   ⟹   XP_038968660
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21172,420,151 - 172,426,974 (-)NCBI
RefSeq Acc Id: XM_039112774   ⟹   XP_038968702
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21172,420,151 - 172,426,527 (-)NCBI
RefSeq Acc Id: XM_039112831   ⟹   XP_038968759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21172,420,151 - 172,426,747 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_446434   ⟸   NM_053982
- UniProtKB: P62246 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006230159   ⟸   XM_006230097
- Peptide Label: isoform X1
- UniProtKB: P62246 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006230160   ⟸   XM_006230098
- Peptide Label: isoform X1
- UniProtKB: P62246 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075906   ⟸   ENSRNOT00000092282
RefSeq Acc Id: ENSRNOP00000075747   ⟸   ENSRNOT00000092513
RefSeq Acc Id: ENSRNOP00000024678   ⟸   ENSRNOT00000024678
RefSeq Acc Id: XP_038968660   ⟸   XM_039112732
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968759   ⟸   XM_039112831
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968702   ⟸   XM_039112774
- Peptide Label: isoform X1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690343
Promoter ID:EPDNEW_R862
Type:initiation region
Name:Rps15a_1
Description:ribosomal protein S15a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01187,766,676 - 187,766,736EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619939 AgrOrtholog
Ensembl Genes ENSRNOG00000018320 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000024678 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000075747 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000075906 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024678 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000092282 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000092513 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6921126 IMAGE-MGC_LOAD
InterPro Ribosomal_S8 UniProtKB/Swiss-Prot
  Ribosomal_S8_sf UniProtKB/Swiss-Prot
KEGG Report rno:117053 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72730 IMAGE-MGC_LOAD
NCBI Gene 117053 ENTREZGENE
PANTHER PTHR11758 UniProtKB/Swiss-Prot
Pfam Ribosomal_S8 UniProtKB/Swiss-Prot
PhenoGen Rps15a PhenoGen
PROSITE RIBOSOMAL_S8 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56047 UniProtKB/Swiss-Prot
UniProt P62246 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P39027 UniProtKB/Swiss-Prot
  P39031 UniProtKB/Swiss-Prot
  Q8C023 UniProtKB/Swiss-Prot
  Q9BV24 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rps15a  ribosomal protein S15a      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rps15a  ribosomal protein S15a      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_other 10 to 15 copies of the gene 633990
gene_protein 129 amino acids 633990