LOC120100415 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120100415 (small nucleolar RNA SNORA17) Rattus norvegicus
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Symbol: LOC120100415
Name: small nucleolar RNA SNORA17
RGD ID: 41154129
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07005543.1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,602,785 - 180,602,916 (-)NCBIGRCr8
mRatBN7.21171,168,503 - 171,168,634 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1171,168,503 - 171,168,634 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1186,497,670 - 186,497,801 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120100415
1 total Variants

1 to 10 of 74 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat

1 to 10 of 74 rows





RefSeq Transcripts XR_005500174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1171,168,503 - 171,168,634 (-)Ensembl
RefSeq Acc Id: XR_005500174
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,602,785 - 180,602,916 (-)NCBI
mRatBN7.21171,168,503 - 171,168,634 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-57707 BioCyc
Ensembl Genes ENSRNOG00000059173 Ensembl
NCBI Gene LOC120100415 ENTREZGENE
PhenoGen LOC120100415 PhenoGen
RatGTEx ENSRNOG00000059173 RatGTEx
RNAcentral URS00006A501A RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100415  small nucleolar RNA SNORA17  AABR07005543.1    Data merged from RGD:15012363 737654 PROVISIONAL
2021-01-27 LOC120100415  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07005543.1        Symbol and Name status set to provisional 45752 PROVISIONAL