Tnnt3 (troponin T3, fast skeletal type) - Rat Genome Database

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Gene: Tnnt3 (troponin T3, fast skeletal type) Rattus norvegicus
Analyze
Symbol: Tnnt3
Name: troponin T3, fast skeletal type
RGD ID: 3883
Description: Predicted to enable calcium-dependent protein binding activity and cytoskeletal protein binding activity. Predicted to contribute to actin binding activity. Involved in regulation of striated muscle contraction. Part of troponin complex. Human ortholog(s) of this gene implicated in distal arthrogryposis type 2B and distal arthrogryposis type 2B2. Orthologous to human TNNT3 (troponin T3, fast skeletal type); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: fast skeletal muscle troponin T; fast skeletal troponin T beta-1 isoform; fTnT; skeletal troponin T alpha-1 isoform; Tnt; tnTf; Troponin T fast skeletal; troponin T type 3 (skeletal, fast); troponin T, fast skeletal muscle; troponin T3; troponin T3, skeletal, fast
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21197,652,535 - 197,669,736 (+)NCBI
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01215,666,628 - 215,683,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01222,561,418 - 222,578,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41202,748,063 - 202,761,965 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11202,908,518 - 202,917,537 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBICelera
Cytogenetic Map1q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
troponin complex  (IBA,IDA,IEA,ISO,TAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References

Additional References at PubMed
PMID:1299083   PMID:2986851   PMID:3735424   PMID:6179945   PMID:6205765   PMID:8987992   PMID:9724539   PMID:15507453   PMID:17194691   PMID:19182904   PMID:21490260  


Genomics

Comparative Map Data
Tnnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21197,652,535 - 197,669,736 (+)NCBI
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01215,666,628 - 215,683,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01222,561,418 - 222,578,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41202,748,063 - 202,761,965 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11202,908,518 - 202,917,537 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBICelera
Cytogenetic Map1q41NCBI
TNNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl111,919,703 - 1,938,706 (+)EnsemblGRCh38hg38GRCh38
GRCh38111,919,551 - 1,938,704 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37111,940,933 - 1,959,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,897,445 - 1,916,514 (+)NCBINCBI36hg18NCBI36
Build 34111,900,668 - 1,916,510NCBI
Celera1111,177 - 30,313 (+)NCBI
Cytogenetic Map11p15.5NCBI
HuRef111,709,242 - 1,728,503 (+)NCBIHuRef
CHM1_1111,939,717 - 1,958,858 (+)NCBICHM1_1
Tnnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,052,530 - 142,069,746 (+)NCBIGRCm39mm39
GRCm39 Ensembl7142,052,573 - 142,069,746 (+)Ensembl
GRCm387142,498,771 - 142,516,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,498,836 - 142,516,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv377149,684,741 - 149,701,914 (+)NCBIGRCm37mm9NCBIm37
MGSCv367142,308,233 - 142,325,393 (+)NCBImm8
Celera7142,254,685 - 142,271,858 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.94NCBI
Tnnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,702,015 - 13,718,915 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,702,015 - 13,718,915 (+)NCBIChiLan1.0ChiLan1.0
TNNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1111,968,184 - 1,987,846 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,968,184 - 1,987,849 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0111,936,614 - 1,955,784 (+)NCBIMhudiblu_PPA_v0panPan3
TNNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,131,925 - 46,148,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,074,700 - 46,149,131 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1844,741,795 - 44,758,468 (+)NCBI
ROS_Cfam_1.01846,812,971 - 46,829,661 (+)NCBI
UMICH_Zoey_3.11846,260,272 - 46,276,949 (+)NCBI
UNSW_CanFamBas_1.01845,840,558 - 45,857,236 (+)NCBI
UU_Cfam_GSD_1.01846,586,814 - 46,603,499 (+)NCBI
Tnnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,551,243 - 1,567,924 (+)NCBI
SpeTri2.0NW_004936816805,360 - 822,044 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2989,931 - 1,317,600 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,297,826 - 1,316,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNNT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,718,729 - 1,738,271 (+)NCBI
ChlSab1.1 Ensembl11,718,523 - 1,738,477 (+)Ensembl
Vero_WHO_p1.0NW_02366603898,918,119 - 98,934,360 (+)NCBI
Tnnt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476714,784,267 - 14,801,477 (+)NCBI

Position Markers
D1Arb23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21197,655,883 - 197,656,196 (+)MAPPER
Rnor_6.01215,669,977 - 215,670,289NCBIRnor6.0
Rnor_5.01222,564,767 - 222,565,079UniSTSRnor5.0
RGSC_v3.41202,748,498 - 202,748,810UniSTSRGSC3.4
Celera1195,273,248 - 195,273,560UniSTS
FHH x ACI Map195.53UniSTS
FHH x ACI Map195.53RGD
Cytogenetic Map1q41-q42UniSTS
D1Wox55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21197,655,456 - 197,655,660 (+)MAPPER
Rnor_6.01215,669,550 - 215,669,753NCBIRnor6.0
Rnor_5.01222,564,340 - 222,564,543UniSTSRnor5.0
RGSC_v3.41202,748,071 - 202,748,274UniSTSRGSC3.4
Celera1195,272,821 - 195,273,024UniSTS
Cytogenetic Map1q41-q42UniSTS
RH139831  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21197,656,672 - 197,656,877 (+)MAPPER
Rnor_6.01215,670,766 - 215,670,970NCBIRnor6.0
Rnor_5.01222,565,556 - 222,565,760UniSTSRnor5.0
RGSC_v3.41202,749,287 - 202,749,491UniSTSRGSC3.4
Celera1195,274,037 - 195,274,241UniSTS
RH 3.4 Map11437.5UniSTS
Cytogenetic Map1q41-q42UniSTS
Tnnt3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21197,665,586 - 197,666,040 (+)MAPPER
Rnor_6.01215,679,680 - 215,680,133NCBIRnor6.0
Rnor_5.01222,574,470 - 222,574,923UniSTSRnor5.0
Celera1195,282,951 - 195,283,404UniSTS
Cytogenetic Map1q41-q42UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)199983293216325819Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1175447029220447029Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1175447029220447029Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1126240667217054291Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1193220385238220385Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
631260Tcas2Tongue tumor susceptibility QTL 24.93tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1210019247217054418Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1189514504234514504Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1198585664236763415Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1137787261236763528Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)199983293216213510Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1156446196243311614Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1197963658242963658Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1205603081244401301Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1100131562236763528Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779320219238476Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1197187728230420772Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1153834077232297227Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1189170900234170900Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1189170900234170900Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1189170900234170900Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1189170900234170900Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1189170900234170900Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1189170900234170900Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1189170900234170900Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1189170900234170900Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1205195290250195290Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1198446729240017341Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1193968438261264776Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1210960636236763528Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1195598053265002735Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1194554354239554354Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1213476630278978026Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1201146802241482368Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1108986301219232156Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1161784169219232156Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1108986301238830534Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1108986301219232156Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1167394665219232156Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169219232156Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1161784169219232156Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1161784169219232156Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1185390068230390068Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1359018Hrtrt20Heart rate QTL 203.08heart pumping trait (VT:2000009)heart rate (CMO:0000002)1201358068221983732Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1196738546241738546Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1210360774264802828Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700233490237Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1198655722244992610Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1167394665238830534Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1201358068252480016Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1208517798266948272Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1190282646235282646Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1188850303233850303Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1137787261236763528Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1175462885220462885Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1154337847215828102Rat
6480777Insul17Insulin level QTL 173.86blood insulin amount (VT:0001560)blood insulin level area under curve (AUC) (CMO:0000351)1215097781216213510Rat
6480780Insul18Insulin level QTL 184.11blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1206950905218614387Rat
6480783Insul19Insulin level QTL 194.33blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1215494321218614387Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1197187728238220385Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1202571665264802994Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1144634295241482368Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1210652654255652654Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1202571665264802994Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210990171255990171Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1194872362239872362Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:416
Count of miRNA genes:64
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000027563, ENSRNOT00000040598, ENSRNOT00000051425, ENSRNOT00000063918, ENSRNOT00000066135, ENSRNOT00000066896
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 8 11 8
Medium 2 4 17 8 19 8 10 20 10
Low 1 39 25 18 18 58 24 16 1
Below cutoff 15 15 15 16 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB612473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ062204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ273678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M15202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000040598   ⟹   ENSRNOP00000049386
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,666,628 - 215,683,622 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000051425   ⟹   ENSRNOP00000050785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000063918   ⟹   ENSRNOP00000062891
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066135   ⟹   ENSRNOP00000062653
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066896   ⟹   ENSRNOP00000059829
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080339   ⟹   ENSRNOP00000075571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,666,628 - 215,683,628 (+)Ensembl
RefSeq Acc Id: NM_001270664   ⟹   NP_001257593
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270665   ⟹   NP_001257594
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270666   ⟹   NP_001257595
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270668   ⟹   NP_001257597
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270670   ⟹   NP_001257599
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270671   ⟹   NP_001257600
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270672   ⟹   NP_001257601
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270673   ⟹   NP_001257602
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270675   ⟹   NP_001257604
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270676   ⟹   NP_001257605
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270677   ⟹   NP_001257606
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270678   ⟹   NP_001257607
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031532   ⟹   NP_113720
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,535 - 197,669,535 (+)NCBI
Rnor_6.01215,666,628 - 215,683,628 (+)NCBI
Rnor_5.01222,561,418 - 222,578,418 (+)NCBI
RGSC_v3.41202,748,063 - 202,761,965 (+)RGD
Celera1195,269,899 - 195,286,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760080   ⟹   XP_008758302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,564 - 197,669,530 (+)NCBI
Rnor_6.01215,666,642 - 215,683,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760081   ⟹   XP_008758303
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,562 - 197,669,530 (+)NCBI
Rnor_6.01215,666,642 - 215,683,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760085   ⟹   XP_008758307
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,589 - 197,669,530 (+)NCBI
Rnor_6.01215,666,642 - 215,683,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017588788   ⟹   XP_017444277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,564 - 197,669,530 (+)NCBI
Rnor_6.01215,666,642 - 215,683,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100908   ⟹   XP_038956836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,557 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100911   ⟹   XP_038956839
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,557 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100914   ⟹   XP_038956842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,571 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100918   ⟹   XP_038956846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,554 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100925   ⟹   XP_038956853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,566 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100934   ⟹   XP_038956862
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,563 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100939   ⟹   XP_038956867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100944   ⟹   XP_038956872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,558 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100950   ⟹   XP_038956878
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100955   ⟹   XP_038956883
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,431 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100960   ⟹   XP_038956888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,558 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100967   ⟹   XP_038956895
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,558 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100972   ⟹   XP_038956900
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,574 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100976   ⟹   XP_038956904
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,555 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100979   ⟹   XP_038956907
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,568 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100980   ⟹   XP_038956908
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,575 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100983   ⟹   XP_038956911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,565 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100986   ⟹   XP_038956914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,556 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100989   ⟹   XP_038956917
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100992   ⟹   XP_038956920
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,574 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100993   ⟹   XP_038956921
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,652,607 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100996   ⟹   XP_038956924
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,431 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100997   ⟹   XP_038956925
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039100998   ⟹   XP_038956926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,736 (+)NCBI
RefSeq Acc Id: XM_039101000   ⟹   XP_038956928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,530 (+)NCBI
RefSeq Acc Id: XM_039101001   ⟹   XP_038956929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,530 (+)NCBI
RefSeq Acc Id: XM_039101002   ⟹   XP_038956930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,530 (+)NCBI
RefSeq Acc Id: XM_039101004   ⟹   XP_038956932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21197,655,433 - 197,669,530 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001257593 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257594 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257595 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257597 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257599 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257600 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257601 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257602 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257604 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257605 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257606 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257607 (Get FASTA)   NCBI Sequence Viewer  
  NP_113720 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758302 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758303 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758307 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444277 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956836 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956842 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956862 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956895 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956900 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956904 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956907 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956908 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956914 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956917 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956920 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956921 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956932 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA16032 (Get FASTA)   NCBI Sequence Viewer  
  AAA16033 (Get FASTA)   NCBI Sequence Viewer  
  AAA16034 (Get FASTA)   NCBI Sequence Viewer  
  AAA96440 (Get FASTA)   NCBI Sequence Viewer  
  AAA96441 (Get FASTA)   NCBI Sequence Viewer  
  AAA96442 (Get FASTA)   NCBI Sequence Viewer  
  AAA96443 (Get FASTA)   NCBI Sequence Viewer  
  AAA96444 (Get FASTA)   NCBI Sequence Viewer  
  AAA96446 (Get FASTA)   NCBI Sequence Viewer  
  AAA96447 (Get FASTA)   NCBI Sequence Viewer  
  AAA96448 (Get FASTA)   NCBI Sequence Viewer  
  AAA96449 (Get FASTA)   NCBI Sequence Viewer  
  AAA96450 (Get FASTA)   NCBI Sequence Viewer  
  AAA96451 (Get FASTA)   NCBI Sequence Viewer  
  AAA96452 (Get FASTA)   NCBI Sequence Viewer  
  AAA96453 (Get FASTA)   NCBI Sequence Viewer  
  AAA96456 (Get FASTA)   NCBI Sequence Viewer  
  AAA96457 (Get FASTA)   NCBI Sequence Viewer  
  AAA96458 (Get FASTA)   NCBI Sequence Viewer  
  AAA96459 (Get FASTA)   NCBI Sequence Viewer  
  AAA96460 (Get FASTA)   NCBI Sequence Viewer  
  AAA96461 (Get FASTA)   NCBI Sequence Viewer  
  AAA96462 (Get FASTA)   NCBI Sequence Viewer  
  AAA96463 (Get FASTA)   NCBI Sequence Viewer  
  AAA96464 (Get FASTA)   NCBI Sequence Viewer  
  AAA96465 (Get FASTA)   NCBI Sequence Viewer  
  AAA96468 (Get FASTA)   NCBI Sequence Viewer  
  AAA96469 (Get FASTA)   NCBI Sequence Viewer  
  AAA96472 (Get FASTA)   NCBI Sequence Viewer  
  AAA96473 (Get FASTA)   NCBI Sequence Viewer  
  AAA96474 (Get FASTA)   NCBI Sequence Viewer  
  AAA96475 (Get FASTA)   NCBI Sequence Viewer  
  AAA96476 (Get FASTA)   NCBI Sequence Viewer  
  AAA96477 (Get FASTA)   NCBI Sequence Viewer  
  AAA96478 (Get FASTA)   NCBI Sequence Viewer  
  AAA96479 (Get FASTA)   NCBI Sequence Viewer  
  AAA96480 (Get FASTA)   NCBI Sequence Viewer  
  AAA96481 (Get FASTA)   NCBI Sequence Viewer  
  AAA96483 (Get FASTA)   NCBI Sequence Viewer  
  AAY59901 (Get FASTA)   NCBI Sequence Viewer  
  ABB51539 (Get FASTA)   NCBI Sequence Viewer  
  EDM12137 (Get FASTA)   NCBI Sequence Viewer  
  EDM12138 (Get FASTA)   NCBI Sequence Viewer  
  EDM12139 (Get FASTA)   NCBI Sequence Viewer  
  EDM12140 (Get FASTA)   NCBI Sequence Viewer  
  EDM12141 (Get FASTA)   NCBI Sequence Viewer  
  EDM12142 (Get FASTA)   NCBI Sequence Viewer  
  EDM12143 (Get FASTA)   NCBI Sequence Viewer  
  EDM12144 (Get FASTA)   NCBI Sequence Viewer  
  EDM12145 (Get FASTA)   NCBI Sequence Viewer  
  EDM12146 (Get FASTA)   NCBI Sequence Viewer  
  EDM12147 (Get FASTA)   NCBI Sequence Viewer  
  P09739 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113720   ⟸   NM_031532
- Peptide Label: isoform 8
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257595   ⟸   NM_001270666
- Peptide Label: isoform 2
- UniProtKB: P09739 (UniProtKB/Swiss-Prot),   A0A0G2JSW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257594   ⟸   NM_001270665
- Peptide Label: isoform 1
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257605   ⟸   NM_001270676
- Peptide Label: isoform 10
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257602   ⟸   NM_001270673
- Peptide Label: isoform 7
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257607   ⟸   NM_001270678
- Peptide Label: isoform 13
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257604   ⟸   NM_001270675
- Peptide Label: isoform 9
- Sequence:
RefSeq Acc Id: NP_001257601   ⟸   NM_001270672
- Peptide Label: isoform 6
- UniProtKB: A0A0H2UHY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257599   ⟸   NM_001270670
- Peptide Label: isoform 4
- UniProtKB: P09739 (UniProtKB/Swiss-Prot),   A0A0G2KAY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257600   ⟸   NM_001270671
- Peptide Label: isoform 5
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257597   ⟸   NM_001270668
- Peptide Label: isoform 3
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257593   ⟸   NM_001270664
- Peptide Label: isoform 11
- UniProtKB: P09739 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257606   ⟸   NM_001270677
- Peptide Label: isoform 12
- Sequence:
RefSeq Acc Id: XP_008758303   ⟸   XM_008760081
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_008758302   ⟸   XM_008760080
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_008758307   ⟸   XM_008760085
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_017444277   ⟸   XM_017588788
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: ENSRNOP00000075571   ⟸   ENSRNOT00000080339
RefSeq Acc Id: ENSRNOP00000062891   ⟸   ENSRNOT00000063918
RefSeq Acc Id: ENSRNOP00000050785   ⟸   ENSRNOT00000051425
RefSeq Acc Id: ENSRNOP00000062653   ⟸   ENSRNOT00000066135
RefSeq Acc Id: ENSRNOP00000059829   ⟸   ENSRNOT00000066896
RefSeq Acc Id: ENSRNOP00000049386   ⟸   ENSRNOT00000040598
RefSeq Acc Id: XP_038956846   ⟸   XM_039100918
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038956904   ⟸   XM_039100976
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038956914   ⟸   XM_039100986
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038956836   ⟸   XM_039100908
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956839   ⟸   XM_039100911
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038956872   ⟸   XM_039100944
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038956895   ⟸   XM_039100967
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038956888   ⟸   XM_039100960
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038956862   ⟸   XM_039100934
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038956911   ⟸   XM_039100983
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038956853   ⟸   XM_039100925
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038956907   ⟸   XM_039100979
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038956842   ⟸   XM_039100914
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038956900   ⟸   XM_039100972
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038956920   ⟸   XM_039100992
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038956908   ⟸   XM_039100980
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038956921   ⟸   XM_039100993
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038956883   ⟸   XM_039100955
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038956924   ⟸   XM_039100996
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038956867   ⟸   XM_039100939
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038956917   ⟸   XM_039100989
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038956925   ⟸   XM_039100997
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038956878   ⟸   XM_039100950
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038956926   ⟸   XM_039100998
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038956928   ⟸   XM_039101000
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038956929   ⟸   XM_039101001
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038956932   ⟸   XM_039101004
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038956930   ⟸   XM_039101002
- Peptide Label: isoform X31

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690563
Promoter ID:EPDNEW_R1088
Type:multiple initiation site
Name:Tnnt3_1
Description:troponin T3, fast skeletal type
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01215,666,666 - 215,666,726EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3883 AgrOrtholog
Ensembl Genes ENSRNOG00000020332 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000049386 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000050785 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000059829 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000062653 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000062891 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000075571 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040598 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000051425 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000063918 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000066135 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000066896 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000080339 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TNNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tnnt3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Troponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Troponin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24838 UniProtKB/Swiss-Prot
NCBI Gene 24838 ENTREZGENE
PANTHER PTHR11521 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11521:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Troponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnnt3 PhenoGen
Superfamily-SCOP SSF90250 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JSW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KAY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0H2UHY9 ENTREZGENE, UniProtKB/TrEMBL
  P09739 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P09740 UniProtKB/Swiss-Prot
  Q304F4 UniProtKB/Swiss-Prot
  Q4PPA0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Tnnt3  troponin T3, fast skeletal type  Tnnt3  troponin T type 3 (skeletal, fast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Tnnt3  troponin T type 3 (skeletal, fast)  Tnnt3  troponin T3, skeletal, fast  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Tnnt3  troponin T3, skeletal, fast    troponin T3  Name updated 1299863 APPROVED
2002-06-10 Tnnt3  Troponin T, fast skeletal      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference