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Gene: Deaf1 (DEAF1 transcription factor) Rattus norvegicus
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Symbol: Deaf1
Name: DEAF1 transcription factor
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to the cytoplasm; nuclear lumen; and transcription factor complex. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 24. Orthologous to human DEAF1 (DEAF1 transcription factor); INTERACTS WITH (RS)-amphetamine; 1,2,4-trimethylbenzene; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: DEAF-1 related transcriptional regulator (NUDR); deformed epidermal autoregulatory factor 1 (Drosophila); deformed epidermal autoregulatory factor 1 homolog; nuclear DEAF-1-related transcriptional regulator; NUDR; suppressin
Orthologs:
Homo sapiens (human) : DEAF1 (DEAF1 transcription factor)  HGNC  Alliance
Mus musculus (house mouse) : Deaf1 (DEAF1, transcription factor)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Deaf1 (DEAF1 transcription factor)
Pan paniscus (bonobo/pygmy chimpanzee) : DEAF1 (DEAF1 transcription factor)
Canis lupus familiaris (dog) : DEAF1 (DEAF1 transcription factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Deaf1 (DEAF1 transcription factor)
Sus scrofa (pig) : DEAF1 (DEAF1 transcription factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01214,283,787 - 214,317,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,283,790 - 214,317,466 (-)Ensembl
Rnor_5.01221,201,334 - 221,234,579 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,491,091 - 201,524,767 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11201,642,425 - 201,679,478 (-)NCBI
Celera1194,035,728 - 194,069,227 (-)NCBICelera
Cytogenetic Map1q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Deaf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620671
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.