Or13a27 (olfactory receptor family 13 subfamily A member 27) - Rat Genome Database

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Gene: Or13a27 (olfactory receptor family 13 subfamily A member 27) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or13a27
Name: olfactory receptor family 13 subfamily A member 27
RGD ID: 1333577
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 295; olfactory receptor gene Olr295; olfactory receptor Olr295; Olr295; ratchr1-200447397-200446465_ORF
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81204,665,234 - 204,666,166 (-)NCBIGRCr8
mRatBN7.21195,235,583 - 195,236,515 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1195,233,749 - 195,252,709 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1203,589,332 - 203,590,264 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,698,525 - 210,699,457 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01203,372,371 - 203,373,303 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,911,267 - 212,912,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,911,267 - 212,912,199 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,840,418 - 219,841,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41200,296,473 - 200,297,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11200,446,464 - 200,447,397 (-)NCBI
Celera1192,897,383 - 192,898,315 (-)NCBICelera
Cytogenetic Map1q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or13a27Ratdetection of chemical stimulus involved in sensory perception of smell involved_inIEAGO:00049841600115GO_REF:0000108GOCGO_REF:0000108
Or13a27Ratdetection of chemical stimulus involved in sensory perception of smell  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or13a27RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or13a27RatG protein-coupled receptor signaling pathway  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or13a27RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or13a27Ratsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or13a27Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or13a27Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or13a27Ratmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Or13a27Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Or13a27Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Or13a27Ratplasma membrane located_inIEAARBA:ARBA000278011600115GO_REF:0000117UniProtGO_REF:0000117

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or13a27RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or13a27RatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or13a27Ratodorant binding enablesIBAMGI:3030853 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or13a27Ratolfactory receptor activity enablesIBAMGI:3030069 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or13a27Ratolfactory receptor activity  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or13a27Ratolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or13a27Rattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Or13a27
1 total Variants

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:78
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000045179
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 90 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat

1 to 10 of 90 rows



ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
renal system
reproductive system
respiratory system
1 6 6 2 8 2 1 11 8 1 1 4



Ensembl Acc Id: ENSRNOT00000045179   ⟹   ENSRNOP00000049236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,911,267 - 212,912,199 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104417   ⟹   ENSRNOP00000089752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1195,233,897 - 195,252,101 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106142   ⟹   ENSRNOP00000096354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1195,233,749 - 195,252,709 (-)Ensembl
RefSeq Acc Id: NM_001000233   ⟹   NP_001000233
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81204,665,234 - 204,666,166 (-)NCBI
mRatBN7.21195,235,583 - 195,236,515 (-)NCBI
Rnor_6.01212,911,267 - 212,912,199 (-)NCBI
Rnor_5.01219,840,418 - 219,841,350 (-)NCBI
RGSC_v3.41200,296,473 - 200,297,405 (-)RGD
Celera1192,897,383 - 192,898,315 (-)RGD
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_001000233 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11915 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085388.1
  ENSRNOP00000089208.1
  ENSRNOP00000089752.1
  ENSRNOP00000092898.1
  ENSRNOP00000093621.1
  ENSRNOP00000096354.1
  ENSRNOP00000101684
1 to 9 of 9 rows
RefSeq Acc Id: NP_001000233   ⟸   NM_001000233
- UniProtKB: A0A8I6A7Y3 (UniProtKB/TrEMBL),   A6HXI4 (UniProtKB/TrEMBL),   A0A8I6GHW5 (UniProtKB/TrEMBL),   A0A8I6GKD3 (UniProtKB/TrEMBL),   A6HXI7 (UniProtKB/TrEMBL),   A6HXI9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000049236   ⟸   ENSRNOT00000045179
Ensembl Acc Id: ENSRNOP00000096354   ⟸   ENSRNOT00000106142
Ensembl Acc Id: ENSRNOP00000089752   ⟸   ENSRNOT00000104417
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZZ2-F1-model_v2 AlphaFold D3ZZZ2 1-310 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 39 of 39 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-57041 BioCyc
Ensembl Genes ENSRNOG00000033387 Ensembl
  ENSRNOG00000062449 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000063968 UniProtKB/TrEMBL
  ENSRNOG00000065850 UniProtKB/TrEMBL
  ENSRNOG00000085205 ENTREZGENE
Ensembl Transcript ENSRNOT00000104417.1 UniProtKB/TrEMBL
  ENSRNOT00000106142.1 UniProtKB/TrEMBL
  ENSRNOT00000110919.1 UniProtKB/TrEMBL
  ENSRNOT00000114244.1 UniProtKB/TrEMBL
  ENSRNOT00000115116.1 UniProtKB/TrEMBL
  ENSRNOT00000115301.1 UniProtKB/TrEMBL
  ENSRNOT00000165487 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR UniProtKB/TrEMBL
KEGG Report rno:293595 UniProtKB/TrEMBL
NCBI Gene 293595 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or13a27 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033387 RatGTEx
  ENSRNOG00000062449 RatGTEx
  ENSRNOG00000063968 RatGTEx
  ENSRNOG00000065850 RatGTEx
  ENSRNOG00000085205 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A7Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKD3 ENTREZGENE, UniProtKB/TrEMBL
  A6HXI4 ENTREZGENE, UniProtKB/TrEMBL
  A6HXI7 ENTREZGENE, UniProtKB/TrEMBL
  A6HXI9 ENTREZGENE, UniProtKB/TrEMBL
1 to 39 of 39 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or13a27  olfactory receptor family 13 subfamily A member 27  Olr295  olfactory receptor 295  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr295  olfactory receptor 295   Olr295_predicted  olfactory receptor 295 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr295_predicted  olfactory receptor 295 (predicted)      Symbol and Name status set to approved 70820 APPROVED